Swartwood, Brea (2025) Stability
analysis of traveling wave fronts in a model for tumor growth ;
Nonlinear Analysis: Real World Applications; Vol. 81; 104176; 10.1016/j.nonrwa.2024.104176
Squyres, Georgia R and Newman, Dianne (2024) Biofilms
as more than the sum of their parts: lessons from developmental
biology ; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
Shin, Boyoung; Chang, Samantha J.; et el. (2024) Transcriptional
network dynamics in early T cell development ; Journal of
Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
Varshavsky, Alexander (2024) N-degron
pathways ; Proceedings of the National Academy of Sciences; Vol. 121;
No. 39; e2408697121; 10.1073/pnas.2408697121
Agrawal, Parul; Knudsen, Maria L.; et el. (2024) Short
CDRL1 in intermediate VRC01-like mAbs is not sufficient to overcome key
glycan barriers on HIV-1 Env ; Journal of Virology; 10.1128/jvi.00744-24
Polonsky, Michal; Gerhardt, Louisa M. S.; et el. (2024) Spatial
transcriptomics defines injury specific microenvironments and cellular
interactions in kidney regeneration and disease ; Nature
Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
Coppinger, Macey; Liu, Yang; et el. (2024) Transient
infection of Euprymna scolopes with an engineered D-alanine auxotroph of
Vibrio fischeri ; Applied and Environmental Microbiology; e01298-24;
10.1128/aem.01298-24
Flamholz, Avi I.; Goldford, Joshua E.; et el. (2024) Annotation-free
prediction of microbial dioxygen utilization ; mSystems; e00763-24;
10.1128/msystems.00763-24
Der, Balint; Bugacov, Helena; et el. (2024) Cadherin
Adhesion Complexes Direct Cell Aggregation in the Epithelial Transition
of Wnt-Induced Nephron Progenitor Cells ; Development; Vol. 151;
No. 18; dev202303; 10.1242/dev.202303
Zhang, Oumeng; Alcalde, Reinaldo E.; et el. (2024) Investigating
3D microbial community dynamics of the rhizosphere using quantitative
phase and fluorescence microscopy ; Proceedings of the National
Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
Kim, Sunghyun; Koppitch, Kari; et el. (2024) Comparative
single-cell analyses identify shared and divergent features of human and
mouse kidney development ; Developmental Cell; 10.1016/j.devcel.2024.07.013
Dong, Zhenyu; Mahler, Simon; et el. (2024) Non-invasive
laser speckle contrast imaging (LSCI) of extra-embryonic blood vessels
in intact avian eggs at early developmental stages ; Biomedical
Optics Express; Vol. 15; No. 8; 4605-4624; 10.1364/boe.530366
Garibyan, Mher; Hoffman, Tyler; et el. (2024) Engineering
programmable material-to-cell pathways via synthetic notch receptors to
spatially control differentiation in multicellular constructs ;
Nature Communications; Vol. 15; 5891; PMCID PMC11246427; 10.1038/s41467-024-50126-1
Kitchen, Sheila A.; Naragon, Thomas H.; et el. (2024) The
genomic and cellular basis of biosynthetic innovation in rove
beetles ; Cell; Vol. 187; No. 14; 1-22; 10.1016/j.cell.2024.05.012
Treidel, Lisa A.; Deem, Kevin D.; et el. (2024) Insect
Flight: State of the Field and Future Directions ; Integrative And
Comparative Biology; icae106; 10.1093/icb/icae106
Hanley, Deirdre; Li, Zi-Qi; et el. (2024) Stereospecific
Enzymatic Conversion of Boronic Acids to Amines ; Journal of the
American Chemical Society; 10.1021/jacs.4c04190
Yin, Siyuan; Cao, Ruizhi; et el. (2024) Can deep
neural networks work with amplitude and phase input of defocused
images? ; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
Tseropoulos, Georgios; Mehrotra, Pihu; et el. (2024) Immobilized
NRG1 Accelerates Neural Crest like Cell Differentiation Toward
Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ
Nuclear Translocation ; Advanced Science; 2402607; 10.1002/advs.202402607
Zhang, Oumeng; Dahlquist, Nic; et el. (2024) Long-term
imaging of three-dimensional hyphal development using the ePetri
dish ; Biomedical Optics Express; Vol. 15; No. 7; 4292-4299; 10.1364/boe.530483
Lamorie-Foote, Krista; Kramer, Daniel R.; et el. (2024) Primary
somatosensory cortex organization for engineering artificial
somatosensation ; Neuroscience Research; Vol. 204; 1-13; 10.1016/j.neures.2024.01.005
Azevedo, Anthony; Lesser, Ellen; et el. (2024) Connectomic
reconstruction of a female Drosophila ventral nerve cord ; Nature; 10.1038/s41586-024-07389-x
Lesser, Ellen; Azevedo, Anthony W.; et el. (2024) Synaptic
architecture of leg and wing premotor control networks in
Drosophila ; Nature; 10.1038/s41586-024-07600-z
Cervantes Rincón, Tomás; Kapoor, Tania; et el. (2024) Human
antibodies in Mexico and Brazil neutralizing tick-borne
flaviviruses ; Cell Reports; Vol. 43; No. 6; 114298; 10.1016/j.celrep.2024.114298
Han, Yanting and Adolphs, Ralph (2024) A shared
structure for emotion experiences from narratives, videos and everyday
life ; iScience; 110378; 10.1016/j.isci.2024.110378
Sperling, Alexis L.; Fabian, Daniel K.; et el. (2024) Protocol
for preparing Drosophila genomic DNA to create chromosome-level de novo
genome assemblies ; STAR Protocols; Vol. 5; No. 2; 102974; PMCID
PMC11002874; 10.1016/j.xpro.2024.102974
Tan, Chieh-Hsiang; Wang, Ting-Yu; et el. (2024) Single-tissue
proteomics in Caenorhabditis elegans reveals proteins resident in
intestinal lysosome-related organelles ; Proceedings of the National
Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
Wang, Renée Z.; Lonergan, Zachery R.; et el. (2024) Widespread
detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O
under anoxia ; Proceedings of the National Academy of Sciences; Vol.
121; No. 25; e2319960121; 10.1073/pnas.2319960121
Oberhofer, Georg; Johnson, Michelle L.; et el. (2024) Cleave
and Rescue gamete killers create conditions for gene drive in
plants ; Nature Plants; 10.1038/s41477-024-01701-3
Sullivan, Delaney K. and Pachter, Lior (2024) Flexible
parsing, interpretation, and editing of technical sequences with
splitcode ; Bioinformatics; Vol. 40; No. 6; btae331; PMCID
PMC11193061; 10.1093/bioinformatics/btae331
Zernicka-Goetz, Magdalena and Hyun, Insoo (2024) Embryo
models need consistent ethical oversight ; Nature; Vol. 630;
No. 8016; 305; 10.1038/d41586-024-01728-8
Dorff, Tanya B.; Blanchard, M. Suzette; et el. (2024) PSCA-CAR
T cell therapy in metastatic castration-resistant prostate cancer: a
phase 1 trial ; Nature Medicine; 10.1038/s41591-024-02979-8
Pardo-Palacios, Francisco J.; Wang, Dingjie; et el. (2024) Systematic
assessment of long-read RNA-seq methods for transcript identification
and quantification ; Nature Methods; 10.1038/s41592-024-02298-3
Huycke, Tyler R.; Häkkinen, Teemu J.; et el. (2024) Patterning
and folding of intestinal villi by active mesenchymal dewetting ;
Cell; Vol. 187; No. 12; 3072-3089.e20; 10.1016/j.cell.2024.04.039
Pang, Marion; Jones, Jeff J.; et el. (2024) Increasing
Proteome Coverage Through a Reduction in Analyte Complexity in
Single-Cell Equivalent Samples ; Journal of Proteome Research; 10.1021/acs.jproteome.4c00062
Cao, Ruizhi; Shen, Cheng; et el. (2024) High-resolution,
large field-of-view label-free imaging via aberration-corrected,
closed-form complex field reconstruction ; Nature Communications;
Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
Lo, Yu-Li; Li, Ching-Yao; et el. (2024) Exploring
in vivo combinatorial chemo-immunotherapy: Addressing p97 suppression
and immune reinvigoration in pancreatic cancer with tumor
microenvironment-responsive nanoformulation ; Biomedicine &
Pharmacotherapy; Vol. 175; 116660; 10.1016/j.biopha.2024.116660
Kim, Jane H.; Dong, Julianna; et el. (2024) Pseudomonas
aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI
Secretion in Response to Oxidative Stress to Initiate Biofilm Formation
and Wound Chronicity ; Antioxidants; Vol. 13; No. 6; 655; PMCID
PMC11200925; 10.3390/antiox13060655
Sierra, Noemie; Olsman, Noah; et el. (2024) A novel
approach to comparative RNA-Seq does not support a conserved set of
orthologs underlying animal regeneration ; Genome Biology and
Evolution; Vol. 16; No. 6; evae120; PMCID PMC11214158; 10.1093/gbe/evae120
Yang, Liu; Lawhorn, Susannah; et el. (2024) Bacterial
growth dynamics in a rhythmic symbiosis ; Molecular Biology of the
Cell; Vol. 35; No. 6; ar79; 10.1091/mbc.e24-01-0044
Rangone, Hélène; Bond, Laura; et el. (2024) Greatwall-Endos-PP2A/B55ᵀʷᶦⁿˢ
network regulates translation and stability of maternal transcripts in
the Drosophila oocyte-to-embryo transition ; Open Biology; Vol. 14;
No. 6; 240065; 10.1098/rsob.240065
Rabut, Claire; Norman, Sumner L.; et el. (2024) Functional
ultrasound imaging of human brain activity through an acoustically
transparent cranial window ; Science Translational Medicine; Vol. 16;
No. 749; eadj3143; 10.1126/scitranslmed.adj3143
Panda, Pallavi; Ladinsky, Mark S.; et el. (2024) 9-fold
symmetry is not essential for centriole elongation and formation of new
centriole-like structures ; Nature Communications; Vol. 15; 4467;
PMCID PMC11127918; 10.1038/s41467-024-48831-y
Zhu, Meng; Meglicki, Maciej; et el. (2024) Tead4 and
Tfap2c generate bipotency and a bistable switch in totipotent embryos to
promote robust lineage diversification ; Nature Structural &
Molecular Biology; 10.1038/s41594-024-01311-9
Junyent, Sergi; Meglicki, Maciej; et el. (2024) The first
two blastomeres contribute unequally to the human embryo ; Cell; Vol.
187; No. 11; 2838-2854.e17; 10.1016/j.cell.2024.04.029
Xia, Shiyu; Lu, Andrew C.; et el. (2024) Synthetic
protein circuits for programmable control of mammalian cell death ;
Cell; Vol. 187; No. 11; 2785-2800.e16; PMCID PMC11127782; 10.1016/j.cell.2024.03.031
Neumann, Adam P.; Sage, Eric; et el. (2024) A Hybrid
Orbitrap‐Nanoelectromechanical Systems Approach to Analysis of
Individual, Intact Proteins in Real Time ; Angewandte Chemie
International Edition; e202317064; 10.1002/anie.202317064
Bou Daher, Firas; Serra, Leo; et el. (2024) Xyloglucan
deficiency leads to a reduction in turgor pressure and changes in cell
wall properties, affecting early seedling establishment ; Current
Biology; Vol. 34; No. 10; 2094-2106.e6; PMCID PMC11111339; 10.1016/j.cub.2024.04.016
Castellaneta, Andrea; Losito, Ilario; et el. (2024) Lipidomics
reveals the reshaping of the mitochondrial phospholipid profile in cells
lacking OPA1 and Mitofusins ; Journal of Lipid Research; 100563; 10.1016/j.jlr.2024.100563
Laubscher, Emily; Wang, Xuefei (Julie); et el. (2024) Accurate
single-molecule spot detection for image-based spatial transcriptomics
with weakly supervised deep learning ; Cell Systems; Vol. 15; No. 5;
475-482.e6; 10.1016/j.cels.2024.04.006
Sun, Jingjing; Durmaz, Ayse Damla; et el. (2024) Two
sequential gene expression programs bridged by cell division support
long-distance collective cell migration ; Development; Vol. 151;
No. 10; dev202262; PMCID PMC11165717; 10.1242/dev.202262
She, Liang; Benna, Marcus K.; et el. (2024) Temporal
multiplexing of perception and memory codes in IT cortex ; Nature;
Vol. 629; No. 8013; 861-868
Bosch, Thomas C. G.; Wigley, Mark; et el. (2024) The
potential importance of the built-environment microbiome and its impact
on human health ; Proceedings of the National Academy of Sciences;
Vol. 121; No. 20; e2313971121; PMCID PMC11098107; 10.1073/pnas.2313971121
Almhjell, Patrick J.; Johnston, Kadina E.; et el. (2024) The
β-subunit of tryptophan synthase is a latent tyrosine synthase ;
Nature Chemical Biology; 10.1038/s41589-024-01619-z
Wandelt, Sarah K.; Bjånes, David A.; et el. (2024) Representation
of internal speech by single neurons in human supramarginal gyrus ;
Nature Human Behaviour; 10.1038/s41562-024-01867-y
Bhat, Prashant; Chow, Amy; et el. (2024) Genome
organization around nuclear speckles drives mRNA splicing
efficiency ; Nature; 10.1038/s41586-024-07429-6
Hills, Rory A.; Tan, Tiong Kit; et el. (2024) Proactive
vaccination using multiviral Quartet Nanocages to elicit broad
anti-coronavirus responses ; Nature Nanotechnology; 10.1038/s41565-024-01655-9
Bosch, Thomas C. G.; Blaser, Martin J.; et el. (2024) A new
lexicon in the age of microbiome research ; Philosophical
Transactions of the Royal Society B: Biological Sciences; Vol. 379;
No. 1901; 20230060; PMCID PMC10945402; 10.1098/rstb.2023.0060
Yamashita, Shun-ichi; Sugiura, Yuki; et el. (2024) Mitophagy
mediated by BNIP3 and NIX protects against ferroptosis by downregulating
mitochondrial reactive oxygen species ; Cell Death &
Differentiation; Vol. 31; No. 5; 651-661; PMCID PMC11094013; 10.1038/s41418-024-01280-y
Aghilinejad, Arian and Gharib, Morteza (2024) Assessing
pressure wave components for aortic stiffness monitoring through
spectral regression learning ; European Heart Journal Open; Vol. 4;
No. 3; oeae040; PMCID PMC11165314; 10.1093/ehjopen/oeae040
Wright, Adam; Wilkinson, Mark D.; et el. (2024) FAIR
Header Reference genome: a TRUSTworthy standard ; Briefings in
Bioinformatics; Vol. 25; No. 3; bbae122; PMCID PMC10981671; 10.1093/bib/bbae122
Sato, Nanami; Rosa, Viviane S.; et el. (2024) Basal
delamination during mouse gastrulation primes pluripotent cells for
differentiation ; Developmental Cell; Vol. 59; No. 10; 1252-1268.e13;
10.1016/j.devcel.2024.03.008
Aleksander, Suzanne A.; Anagnostopoulos, Anna V.; et el. (2024) Updates
to the Alliance of Genome Resources central infrastructure ;
Genetics; Vol. 227; No. 1; iyae049; PMCID PMC11075569; 10.1093/genetics/iyae049
Tsypin, Lev M. Z.; Saunders, Scott H.; et el. (2024) Genetically
dissecting the electron transport chain of a soil bacterium reveals a
generalizable mechanism for biological phenazine-1-carboxylic acid
oxidation ; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical
limits of energy extraction in active fluids ; Physical Review
Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
Sternberg, Paul W.; Van Auken, Kimberly; et el. (2024) WormBase
2024: status and transitioning to Alliance infrastructure ; Genetics;
Vol. 227; No. 1; iyae050; PMCID PMC11075546; 10.1093/genetics/iyae050
Wang, Bo; Torok, Zsofia; et el. (2024) Unsupervised
restoration of a complex learned behavior after large-scale neuronal
perturbation ; Nature Neuroscience; 10.1038/s41593-024-01630-6
Ross, Karen E.; Bastian, Frederic B.; et el. (2024) Perspectives
on tracking data reuse across biodata resources ; Bioinformatics
Advances; Vol. 4; vbae057; PMCID PMC11076920; 10.1093/bioadv/vbae057
Kim, Na Yeon; He, Junfeng; et el. (2024) Smartphone‐based
gaze estimation for in‐home autism research ; Autism Research; 10.1002/aur.3140
Husar, Adam; Ordyan, Mariam; et el. (2024) MCell4
with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion
systems with Python interface ; PLoS Computational Biology; 10.1371/journal.pcbi.1011800
Griffiths, Jessica A.; Yoo, Bryan B.; et el. (2024) Peripheral
neuronal activation shapes the microbiome and alters gut physiology ;
Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
Parker, Joseph (2024) Symbiosis:
Did bacteria bias the beetle big bang? ; Current Biology; Vol. 34;
No. 8; R323-R325; 10.1016/j.cub.2024.03.009
Edens, Brittany M.; Stundl, Jan; et el. (2024) Neural
crest origin of sympathetic neurons at the dawn of vertebrates ;
Nature; 10.1038/s41586-024-07297-0
Andersson, Emil; Rothenberg, Ellen V.; et el. (2024) T-cell
commitment inheritance—an agent-based multi-scale model ; npj Systems
Biology and Applications; Vol. 10; 40; PMCID PMC11024127; 10.1038/s41540-024-00368-y
Daume, Jonathan; Kamiński, Jan; et el. (2024) Control
of working memory by phase–amplitude coupling of human hippocampal
neurons ; Nature; 10.1038/s41586-024-07309-z
Melis, Johan M.; Siwanowicz, Igor; et el. (2024) Machine
learning reveals the control mechanics of an insect wing hinge ;
Nature; 10.1038/s41586-024-07293-4
Magkiriadou, Sofia; Stepp, Willi L.; et el. (2024) Polyphosphate
affects cytoplasmic and chromosomal dynamics in nitrogen-starved
Pseudomonas aeruginosa ; Proceedings of the National Academy of
Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
Ding, Xiaozhe; Chen, Xinhong; et el. (2024) Fast,
accurate ranking of engineered proteins by target-binding propensity
using structure modeling ; Molecular Therapy; 10.1016/j.ymthe.2024.04.003
Guo, Jimmy K.; Blanco, Mario R.; et el. (2024) Denaturing
purifications demonstrate that PRC2 and other widely reported chromatin
proteins do not appear to bind directly to RNA in vivo ; Molecular
Cell; Vol. 84; No. 7; 1271-1289.e12; PMCID PMC10997485; 10.1016/j.molcel.2024.01.026
Wallach, Izhar; Bernard, Denzil; et el. (2024) AI is a
viable alternative to high throughput screening: a 318-target study ;
Scientific Reports; Vol. 14; 7526; 10.1038/s41598-024-54655-z
Endo, Yoshitaka; Asanuma, Rinka; et el. (2024) Systematic
Face Pareidolia Generation Method Using Cycle‐Consistent Adversarial
Networks ; IEEJ Transactions on Electrical and Electronic
Engineering; Vol. 19; No. 4; 535-541; 10.1002/tee.23997
Booeshaghi, Ali Sina; Chen, Xi; et el. (2024) A
machine-readable specification for genomics assays ; Bioinformatics;
Vol. 40; No. 4; btae168; PMCID PMC11009023; 10.1093/bioinformatics/btae168
Ma, Jun; Xie, Ronald; et el. (2024) The
multimodality cell segmentation challenge: toward universal
solutions ; Nature Methods; 10.1038/s41592-024-02233-6
Markarian, Nicholas; Van Auken, Kimberly M.; et el. (2024) Enrichment
on steps, not genes, improves inference of differentially expressed
pathways ; PLOS Computational Biology; Vol. 20; No. 3; e1011968;
PMCID PMC10994554; 10.1371/journal.pcbi.1011968
Tran, Martin; Askary, Amjad; et el. (2024) Lineage
motifs as developmental modules for control of cell type
proportions ; Developmental Cell; Vol. 59; No. 6; 812-826.e3; PMCID
PMC10910499
Muthukumar, Gayathri; Stevens, Taylor A.; et el. (2024) Triaging
of α-helical proteins to the mitochondrial outer membrane by distinct
chaperone machinery based on substrate topology ; Molecular Cell;
Vol. 84; No. 6; 1101-1119.e9; 10.1016/j.molcel.2024.01.028
Chakrabarty, Yogaditya; Yang, Zheng; et el. (2024) The HRI
branch of the integrated stress response selectively triggers
mitophagy ; Molecular Cell; Vol. 84; No. 6; 1090-1100.e6; PMCID
PMC11062084; 10.1016/j.molcel.2024.01.016
Suzuki, Miyuki; Okumura, Akinori; et el. (2024) Fgf10
mutant newts regenerate normal hindlimbs despite severe developmental
defects ; Proceedings of the National Academy of Sciences; Vol. 121;
No. 11; e2314911121; PMCID PMC10945807; 10.1073/pnas.2314911121
Weatherbee, Bailey A. T.; Weberling, Antonia; et el. (2024) Distinct
pathways drive anterior hypoblast specification in the implanting human
embryo ; Nature Cell Biology; 10.1038/s41556-024-01367-1
Baltimore, David; Tatel, David S.; et el. (2024) Preface:
Recognizing Implicit Bias in the Scientific & Legal Communities ;
Daedalus; Vol. 153; No. 1; 6-7; 10.1162/daed_e_02043
Luebbert, Laura; Hoang, Chi; et el. (2024) Fast and
scalable querying of eukaryotic linear motifs with gget elm ;
Bioinformatics; Vol. 40; No. 3; btae095; PMCID PMC10927331; 10.1093/bioinformatics/btae095
Zhang, Tony; Rosenberg, Matthew; et el. (2024) Endotaxis:
A neuromorphic algorithm for mapping, goal-learning, navigation, and
patrolling ; eLife; Vol. 12; RP84141; PMCID PMC10911395; 10.7554/elife.84141
Yang, Jason; Li, Francesca-Zhoufan; et el. (2024) Opportunities
and Challenges for Machine Learning-Assisted Enzyme Engineering ; ACS
Central Science; Vol. 10; No. 2; 226-241; PMCID PMC10906252; 10.1021/acscentsci.3c01275
Zhang, Irene H.; Borer, Benedict; et el. (2024) Uncultivated
DPANN archaea are ubiquitous inhabitants of global oxygen-deficient
zones with diverse metabolic potential ; mBio; e02918-23; 10.1128/mbio.02918-23
Bedois, Alice M. H.; Parker, Hugo J.; et el. (2024) Sea
lamprey enlightens the origin of the coupling of retinoic acid signaling
to vertebrate hindbrain segmentation ; Nature Communications; Vol.
15; 1538; PMCID PMC10879103; 10.1038/s41467-024-45911-x
Meyerowitz, Joseph T.; Larsson, Elin M.; et el. (2024) Development
of Cell-Free Transcription–Translation Systems in Three Soil
Pseudomonads ; ACS Synthetic Biology; Vol. 13; No. 2; 530-537; 10.1021/acssynbio.3c00468
Schulte, Samuel J.; Shin, Boyoung; et el. (2024) Multiplex,
Quantitative, High-Resolution Imaging of Protein:Protein Complexes via
Hybridization Chain Reaction ; ACS Chemical Biology; Vol. 19; No. 2;
280-288; PMCID PMC10877569; 10.1021/acschembio.3c00431
Schwartz, Hillel T.; Tan, Chieh-Hsiang; et el. (2024) Molecular
identification of a peroxidase gene controlling body size in the
entomopathogenic nematode Steinernema hermaphroditum ; Genetics; Vol.
226; No. 2; iyad209; 10.1093/genetics/iyad209
Ros, Ivo G.; Omoto, Jaison J.; et el. (2024) Descending
control and regulation of spontaneous flight turns in Drosophila ;
Current Biology; Vol. 34; No. 3; 531-540.e5; PMCID PMC10872223; 10.1016/j.cub.2023.12.047
Piacentino, Michael L.; Fasse, Aria J.; et el. (2024) SMPD3
expression is spatially regulated in the developing embryo by SOXE
factors ; Developmental Biology; Vol. 506; 31-41; PMCID PMC10872304;
10.1016/j.ydbio.2023.11.011
Banerjee, Navonil; Rojas Palato, Elisa J.; et el. (2024) Distinct
neurogenetic mechanisms establish the same chemosensory valence state at
different life stages in Caenorhabditis elegans ; G3: Genes, Genomes,
Genetics; Vol. 14; No. 2; jkad271; PMCID PMC10849362; 10.1093/g3journal/jkad271
Kim, Jane H.; Spero, Melanie; et el. (2024) Targeting
Anaerobic Respiration in Pseudomonas aeruginosa with Chlorate Improves
Healing of Chronic Wounds ; Advances in Wound Care; Vol. 13; No. 2;
53-69; 10.1089/wound.2023.0036
Schulte, Samuel J.; Fornace, Mark E.; et el. (2024) HCR
spectral imaging: 10-plex, quantitative, high-resolution RNA and protein
imaging in highly autofluorescent samples ; Development; Vol. 151;
No. 4; dev202307; PMCID PMC10941662; 10.1242/dev.202307
Haloi, Nandan; Huang, Shan; et el. (2024) Interactive
computational and experimental approaches improve the sensitivity of
periplasmic binding protein-based nicotine biosensors for measurements
in biofluids ; Protein Engineering, Design and Selection; Vol. 37;
gzae003; PMCID PMC10896302; 10.1093/protein/gzae003
Liu, Yi; Lei, Miao; et el. (2024) Electronic
inputs to cue the emergence of hydrogel structure and to confer
function ; Materials Letters; Vol. 355; 135497; 10.1016/j.matlet.2023.135497
Granados, Alejandro A.; Kanrar, Nivedita; et el. (2024) Combinatorial
expression motifs in signaling pathways ; Cell Genomics; Vol. 4;
No. 1; 100463; PMCID PMC10794782; 10.1016/j.xgen.2023.100463
Zhou, Tingtao; Wan, Xuan; et el. (2024) AI-aided
geometric design of anti-infection catheters ; Science Advances; Vol.
10; No. 1; eadj1741; PMCID PMC10776022; 10.1126/sciadv.adj1741
Hoehler, Tori M.; Amend, Jan P.; et el. (2024) Editorial:
Studies on life at the energetic edge – from laboratory experiments to
field-based investigations, volume II ; Frontiers in Microbiology;
Vol. 14; 10.3389/fmicb.2023.1351761
Wackelin, Daniel J.; Mao, Runze; et el. (2024) Enzymatic
Assembly of Diverse Lactone Structures: An Intramolecular C–H
Functionalization Strategy ; Journal of the American Chemical
Society; 10.1021/jacs.3c11722
Larsson, Elin M.; Murray, Richard M.; et el. (2024) Engineering
the Soil Bacterium Pseudomonas synxantha 2–79 into a Ratiometric
Bioreporter for Phosphorus Limitation ; ACS Synthetic Biology; 10.1021/acssynbio.3c00642
Gorin, Gennady and Pachter, Lior (2024) New and
notable: Revisiting the “two cultures” through extrinsic noise ;
Biophysical Journal; Vol. 123; No. 1; 1-3; 10.1016/j.bpj.2023.11.3400
Vasquez Ayala, Adriana; Hsu, Chia-Yun; et el. (2024) Commensal
bacteria promote type I interferon signaling to maintain immune
tolerance in mice ; Journal of Experimental Medicine; Vol. 221;
No. 1; e20230063; PMCID PMC10716256; 10.1084/jem.20230063
Li, Ching-Yao; Chou, Tsui-Fen; et el. (2024) An
innovative nanoformulation utilizing tumor microenvironment-responsive
PEG-polyglutamic coating and dynamic charge adjustment for specific
targeting of ER stress inducer, microRNA, and immunoadjuvant in
pancreatic cancer: In vitro investigations ; International Journal of
Biological Macromolecules; Vol. 254; No. Pt. 2; 127905; 10.1016/j.ijbiomac.2023.127905
Booeshaghi, A. Sina; Min, Kyung Hoi (Joseph); et el. (2024) Quantifying
orthogonal barcodes for sequence census assays ; Bioinformatics
Advances; Vol. 4; vbad181; PMCID PMC10783946; 10.1093/bioadv/vbad181
Zhang, Yameng; Pool, Allan-Hermann; et el. (2023) Parallel
neural pathways control sodium consumption and taste valence ; Cell;
Vol. 186; No. 26; 5751-5765.e16; 10.1016/j.cell.2023.10.020
Nava, Stephanie; Palma, Wilber; et el. (2023) A
cGAL-UAS bipartite expression toolkit for Caenorhabditis elegans sensory
neurons ; Proceedings of the National Academy of Sciences; Vol. 120;
No. 51; e2221680120; PMCID PMC10743456; 10.1073/pnas.2221680120
Sperling, Alexis L. and Glover, David M. (2023) Protocol
for screening facultative parthenogenesis in Drosophila ; STAR
Protocols; Vol. 4; No. 4; 102585; PMCID PMC10520562; 10.1016/j.xpro.2023.102585
Zhang, Bao; He, Peng; et el. (2023) A human
embryonic limb cell atlas resolved in space and time ; Nature; 10.1038/s41586-023-06806-x
Zernicka-Goetz, Magdalena (2023) The
evolution of embryo models ; Nature Methods; 10.1038/s41592-023-02077-6
Sader, John E.; Stassi, Stefano; et el. (2023) Effect of
intramodal and intermodal nonlinearities on the flexural resonant
frequencies of cantilevered beams ; Physical Review B; Vol. 108;
No. 22; 224303; 10.1103/physrevb.108.224303
Bult, Carol J. and Sternberg, Paul W. (2023) The
alliance of genome resources: transforming comparative genomics ;
Mammalian Genome; Vol. 34; No. 4; 531-544; PMCID PMC10628019; 10.1007/s00335-023-10015-2
Shao, Shuai; Meister, Markus; et el. (2023) Efficient
population coding of sensory stimuli ; Physical Review Research; Vol.
5; No. 4; 043205; 10.1103/physrevresearch.5.043205
Yang, Zheng and Chan, David C. (2023) Control
of mitochondrial dynamics by a fusogenic lipid ; Trends in Cell
Biology; Vol. 33; No. 12; 1005-1006; PMCID PMC10841390; 10.1016/j.tcb.2023.10.006
Tropini, Carolina; Finlay, B. Brett; et el. (2023) Time to
rethink academic publishing: the peer reviewer crisis ; mBio; Vol.
14; No. 6; e01091-23; PMCID PMC10746150; 10.1128/mbio.01091-23
Nemet, Ina; Funabashi, Masanori; et el. (2023) Microbe-derived
uremic solutes enhance thrombosis potential in the host ; mBio; Vol.
14; No. 6; e01331-23; 10.7907/ha07h-ryw11
Lau, Kasey Y. C.; Amadei, Gianluca; et el. (2023) Assembly
of complete mouse embryo models from embryonic and induced stem cell
types in vitro ; Nature Protocols; Vol. 18; No. 12; 3662-3689; 10.1038/s41596-023-00891-y
Griggs, Whitney S.; Norman, Sumner L.; et el. (2023) Decoding
motor plans using a closed-loop ultrasonic brain–machine interface ;
Nature Neuroscience; 10.1038/s41593-023-01500-7
Sperling, A. L. and Glover, D. M. (2023) Aneuploidy
during development in facultative parthenogenetic Drosophila ;
Heredity; 10.1038/s41437-023-00664-z
Godneeva, Baira; Ninova, Maria; et el. (2023) SUMOylation
of Bonus, the Drosophila homolog of Transcription Intermediary Factor 1,
safeguards germline identity by recruiting repressive chromatin
complexes to silence tissue-specific genes ; eLife; Vol. 12; RP89493;
PMCID PMC10672805; 10.7554/elife.89493
Stevens, Taylor Anthony; Pinton Tomaleri, Giovani; et el. (2023) A
nanobody-based strategy for rapid and scalable purification of human
protein complexes ; Nature Protocols; 10.1038/s41596-023-00904-w
Xiong, Lingyun; Liu, Jing; et el. (2023) Direct
androgen receptor control of sexually dimorphic gene expression in the
mammalian kidney ; Developmental Cell; Vol. 58; No. 21; 2338-2358.e5;
PMCID PMC10873092; 10.1016/j.devcel.2023.08.010
Spolski, Rosanne; Li, Peng; et el. (2023) Distinct
use of super-enhancer elements controls cell type–specific CD25
transcription and function ; Science Immunology; Vol. 8; No. 89;
eadi8217; 10.1126/sciimmunol.adi8217
Mao, Runze; Taylor, Doris Mia; et el. (2023) Biocatalytic,
stereoconvergent alkylation of (Z/E)-trisubstituted silyl enol
ethers ; Nature Synthesis; 10.1038/s44160-023-00431-2
Luo, Yicheng; He, Peng; et el. (2023) Maternally
inherited siRNAs initiate piRNA cluster formation ; Molecular Cell;
Vol. 83; No. 21; 3835-3851.e7; PMCID PMC10846595; 10.1016/j.molcel.2023.09.033
Mah-Som, Annelise Y.; Daw, Jil; et el. (2023) An
autosomal-dominant childhood-onset disorder associated with pathogenic
variants in VCP ; American Journal of Human Genetics; Vol. 110;
No. 11; 1959-1975; PMCID PMC10645565
Salahshoor, Hossein; Yao, Yuxing; et el. (2023) Geometric
effects in gas vesicle buckling under ultrasound ; Biophysical
Journal; Vol. 121; No. 21; 4221-4228; PMCID PMC9674984; 10.1016/j.bpj.2022.09.004
Godneeva, Baira; Fejes Toth, Katalin; et el. (2023) Impact of
Germline Depletion of Bonus on Chromatin State in Drosophila
Ovaries ; Cells; Vol. 12; No. 22; 2629; PMCID PMC10670193; 10.3390/cells12222629
Moyers, Belle A.; Partridge, E. Christopher; et el. (2023) Characterization
of human transcription factor function and patterns of gene regulation
in HepG2 cells ; Genome Research; Vol. 33; No. 11; 1879-1892; PMCID
PMC10760452; 10.1101/gr.278205.123
Candry, Pieter; Chadwick, Grayson L.; et el. (2023) Trophic
interactions shape the spatial organization of medium-chain carboxylic
acid producing granular biofilm communities ; ISME Journal; Vol. 17;
No. 11; 2014-2022; PMCID PMC10579388; 10.1038/s41396-023-01508-8
Gorin, Gennady; Yoshida, Shawn; et el. (2023) Assessing
Markovian and Delay Models for Single-Nucleus RNA Sequencing ;
Bulletin of Mathematical Biology; Vol. 85; No. 11; 114; 10.1007/s11538-023-01213-9
Sun, Jingjing; Zhang, Chen; et el. (2023) Single-cell
transcriptomics illuminates regulatory steps driving anterior-posterior
patterning of Drosophila embryonic mesoderm ; Cell Reports; Vol. 42;
No. 10; 113289; PMCID PMC10704487; 10.1016/j.celrep.2023.113289
Guna, Alina; Page, Katharine R.; et el. (2023) A dual
sgRNA library design to probe genetic modifiers using genome-wide
CRISPRi screens ; BMC Genomics; Vol. 24; 651; PMCID PMC10614335; 10.1186/s12864-023-09754-y
Jacobs-Li, Jessica; Tang, Weiyi; et el. (2023) Single-cell
profiling coupled with lineage analysis reveals vagal and sacral neural
crest contributions to the developing enteric nervous system ; eLife;
Vol. 12; e79156; PMCID PMC10627514; 10.7554/elife.79156
Kahan, Anat; Mahe, Karan; et el. (2023) Immediate
responses to ambient light in vivo reveal distinct subpopulations of
suprachiasmatic VIP neurons ; iScience; Vol. 26; No. 10; 107865;
PMCID PMC10520357; 10.1016/j.isci.2023.107865
Gorin, Gennady; Vastola, John J.; et el. (2023) Studying
stochastic systems biology of the cell with single-cell genomics
data ; Cell Systems; Vol. 14; No. 10; 822-843.e22; PMCID PMC10725240;
10.1016/j.cels.2023.08.004
Mohanty, Atish; Nam, Arin; et el. (2023) Acquired
resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic
mechanisms in lung cancer ; Science Advances; Vol. 9; No. 41;
eade3816; PMCID PMC10575592; 10.1126/sciadv.ade3816
Wu-Woods, Natalie J.; Barlow, Jacob T.; et el. (2023) Microbial-enrichment
method enables high-throughput metagenomic characterization from
host-rich samples ; Nature Methods; 10.1038/s41592-023-02025-4
Albright, Thomas D.; Baltimore, David; et el. (2023) Science,
evidence, law, and justice ; Proceedings of the National Academy of
Sciences; Vol. 120; No. 41; e2312529120; PMCID PMC10576109; 10.1073/pnas.2312529120
Hung, Shao-Min; Adams, Sara W.; et el. (2023) Practice
makes imperfect: stronger implicit interference with practice in
individuals at high risk of developing Alzheimer’s disease ;
GeroScience; 10.1007/s11357-023-00953-9
Afik, Eldad; Liu, Toni J. B.; et el. (2023) Macroscopic
waves, biological clocks and morphogenesis driven by light in a giant
unicellular green alga ; Nature Communications; Vol. 14; 6204; PMCID
PMC10550971; 10.1038/s41467-023-41813-6
Blumenfeld, Zack; Bera, Kallol; et el. (2023) Antidepressants
enter cells, organelles, and membranes ; Neuropsychopharmacology; 10.1038/s41386-023-01725-x
Chuapoco, Miguel R.; Flytzanis, Nicholas C.; et el. (2023) Adeno-associated
viral vectors for functional intravenous gene transfer throughout the
non-human primate brain ; Nature Nanotechnology; Vol. 18; No. 10;
1241-1251; PMCID PMC10575780; 10.1038/s41565-023-01419-x
Lamanna, Francesco; Hervas-Sotomayor, Francisca; et el. (2023) A lamprey
neural cell type atlas illuminates the origins of the vertebrate
brain ; Nature Ecology & Evolution; Vol. 7; No. 10; 1714-1728;
PMCID PMC10555824; 10.1038/s41559-023-02170-1
Schiava, Marianela; Ikenaga, Chiseko; et el. (2023) Clinical
Classification of Variants in the Valosin-Containing Protein Gene
Associated With Multisystem Proteinopathy ; Neurology Genetics; Vol.
9; No. 5; e200093; 10.1212/nxg.0000000000200093
Venkei, Zsolt G.; Gainetdinov, Ildar; et el. (2023) A
maternally programmed intergenerational mechanism enables male offspring
to make piRNAs from Y-linked precursor RNAs in Drosophila ; Nature
Cell Biology; Vol. 25; No. 10; 1495-1505; PMCID PMC10567549; 10.1038/s41556-023-01227-4
Lim, Jeffrey; Wang, Po T.; et el. (2023) Suppression
of cortical electrostimulation artifacts using pre-whitening and null
projection ; Journal of Neural Engineering; Vol. 20; No. 5; 56018; 10.1088/1741-2552/acf68b
Ji, Jenny; Viloria Winnett, Alexander; et el. (2023) Index
cases first identified by nasal-swab rapid COVID-19 tests had more
transmission to household contacts than cases identified by other test
types ; PLOS ONE; Vol. 18; No. 10; e0292389; PMCID PMC10553276; 10.1371/journal.pone.0292389
Tu, Jiaobing; Min, Jihong; et el. (2023) A
wireless patch for the monitoring of C-reactive protein in sweat ;
Nature Biomedical Engineering; Vol. 7; No. 10; 1293-1306; PMCID
PMC10592261; 10.1038/s41551-023-01059-5
Sockell, Alexandra; Wong, Wing; et el. (2023) A
microwell platform for high-throughput longitudinal phenotyping and
selective retrieval of organoids ; Cell Systems; Vol. 14; No. 9;
764-776.e6; 10.1016/j.cels.2023.08.002
Ma, Yitong; Budde, Mark W.; et el. (2023) Tuning
Methylation-Dependent Silencing Dynamics by Synthetic Modulation of CpG
Density ; ACS Synthetic Biology; Vol. 12; No. 9; 2536-2545; PMCID
PMC10510725; 10.1021/acssynbio.3c00078
Pool, Allan-Hermann; Poldsam, Helen; et el. (2023) Recovery
of missing single-cell RNA-sequencing data with optimized transcriptomic
references ; Nature Methods; 10.1038/s41592-023-02003-w
Weng, Jen-Wei; Park, Heenam; et el. (2023) Body
stiffness is a mechanical property that facilitates contact-mediated
mate recognition in Caenorhabditis elegans ; Current Biology; Vol.
33; No. 17; 3585-3596.e5; PMCID PMC10530406; 10.1016/j.cub.2023.07.020
Sperling, Alexis L.; Fabian, Daniel K.; et el. (2023) A genetic
basis for facultative parthenogenesis in Drosophila ; Current
Biology; Vol. 33; No. 17; 3545-3560.e13; PMCID PMC11044649; 10.1016/j.cub.2023.07.006
Booeshaghi, A. Sina; Beltrame, Eduardo da Veiga; et el. (2023) Author
Correction: Principles of open source bioinstrumentation applied to the
poseidon syringe pump system ; Scientific Reports; Vol. 13; 14834;
PMCID PMC10491597; 10.1038/s41598-023-42035-y
Poceviciute, Roberta; Bogatyrev, Said R.; et el. (2023) Quantitative
whole-tissue 3D imaging reveals bacteria in close association with mouse
jejunum mucosa ; npj Biofilms and Microbiomes; Vol. 9; 64; PMCID
PMC10485000; 10.1038/s41522-023-00423-2
Gao, Shilong; Das, Anuvab; et el. (2023) Enzymatic
Nitrogen Incorporation Using Hydroxylamine ; Journal of the American
Chemical Society; Vol. 145; No. 37; 20196-20201; PMCID PMC10560455; 10.1021/jacs.3c08053
Henrickson, Amy; Ding, Xiaozhe; et el. (2023) Characterization
and quantification of adeno-associated virus capsid-loading states by
multi-wavelength analytical ultracentrifugation with UltraScan ;
Nanomedicine; Vol. 18; No. 22; 1519-1534; PMCID PMC10652292; 10.2217/nnm-2023-0156
Bao, Min; Cornwall-Scoones, Jake; et el. (2023) Stem
cell-derived synthetic embryos self-assemble by exploiting cadherin
codes and cortical tension ; Nature Cell Biology; Vol. 24; No. 9;
1341-2349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
Murali, Ranjani; Yu, Hang; et el. (2023) Physiological
potential and evolutionary trajectories of syntrophic sulfate-reducing
bacterial partners of anaerobic methanotrophic archaea ; PLOS
Biology; Vol. 21; No. 9; e3002292; PMCID PMC10553843; 10.1371/journal.pbio.3002292
Jang, Min J.; Coughlin, Gerard M.; et el. (2023) Spatial
transcriptomics for profiling the tropism of viral vectors in
tissues ; Nature Biotechnology; Vol. 41; No. 9; 1272-1286; PMCID
PMC10443732; 10.1038/s41587-022-01648-w
Horns, Felix; Martinez, Joe A.; et el. (2023) Engineering
RNA export for measurement and manipulation of living cells ; Cell;
Vol. 186; No. 17; 3642-3658.e32; PMCID PMC10528933; 10.1016/j.cell.2023.06.013
Jovanovic, Predrag; Pool, Allan-Hermann; et el. (2023) A
sex-specific thermogenic neurocircuit induced by predator smell
recruiting cholecystokinin neurons in the dorsomedial hypothalamus ;
Nature Communications; Vol. 14; 4937; PMCID PMC10427624; 10.1038/s41467-023-40484-7
Jackson, Kayla C. and Pachter, Lior (2023) A
standard for sharing spatial transcriptomics data ; Cell Genomics;
Vol. 3; No. 8; 100374; PMCID PMC10435375; 10.1016/j.xgen.2023.100374
Hesse, Janis K. and Tsao, Doris Y. (2023) Functional
modules for visual scene segmentation in macaque visual cortex ;
Proceedings of the National Academy of Sciences; Vol. 120; No. 32;
e2221122120; PMCID PMC10410728; 10.1073/pnas.2221122120
De Jonghe, Joachim; Kaminski, Tomasz S.; et el. (2023) spinDrop:
a droplet microfluidic platform to maximise single-cell sequencing
information content ; Nature Communications; Vol. 14; 4788; PMCID
PMC10409775; 10.1038/s41467-023-40322-w
Barlow, Ida L.; Mackay, Eirinn; et el. (2023) The
zebrafish mutant dreammist implicates sodium homeostasis in sleep
regulation ; eLife; Vol. 12; RP87521; PMCID PMC10406431; 10.7554/elife.87521
Luzzi, Anna; Wang, Feng; et el. (2023) Skeletal
muscle cell protein dysregulation highlights the pathogenesis mechanism
of myopathy-associated p97/VCP R155H mutations ; Frontiers in
Neurology; Vol. 14; 1211635; PMCID PMC10435852
Pleiner, Tino; Hazu, Masami; et el. (2023) A
selectivity filter in the ER membrane protein complex limits protein
misinsertion at the ER ; Journal of Cell Biology; Vol. 222; No. 8;
Art. No. e202212007; PMCID PMC10200711; 10.1083/jcb.202212007
Chari, Tara and Pachter, Lior (2023) The
specious art of single-cell genomics ; PLOS Computational Biology;
Vol. 19; No. 8; e1011288; PMCID PMC10434946; 10.1371/journal.pcbi.1011288
Hueschen, Christina L.; Dunn, Alexander R.; et el. (2023) Wildebeest
herds on rolling hills: Flocking on arbitrary curved surfaces ;
Physical Review E; Vol. 108; No. 2; 024610; 10.1103/physreve.108.024610
Thalhammer, Korbinian O. and Newman, Dianne K. (2023) A
phenazine-inspired framework for identifying biological functions of
microbial redox-active metabolites ; Current Opinion in Chemical
Biology; Vol. 75; Art. No. 102320; 10.1016/j.cbpa.2023.102320
Herbst, Ellen D.; Pennington, David L.; et el. (2023) N-acetylcysteine
for smoking cessation among dual users of tobacco and cannabis: Protocol
and rationale for a randomized controlled trial ; Contemporary
Clinical Trials; Vol. 131; 107250; 10.1016/j.cct.2023.107250
Santos, Inês B.; Wainman, Alan; et el. (2023) Mob4 is
essential for spermatogenesis in Drosophila melanogaster ; GENETICS;
Vol. 224; No. 4; iyad104; PMCID PMC10411562; 10.1093/genetics/iyad104
Haccard, Olivier; Ciardo, Diletta; et el. (2023) Rif1
restrains the rate of replication origin firing in Xenopus laevis ;
Communications Biology; Vol. 6; 788; PMCID PMC10387115; 10.1038/s42003-023-05172-8
Mao, Runze; Wackelin, Daniel J.; et el. (2023) Enantio-
and Diastereoenriched Enzymatic Synthesis of 1,2,3-Polysubstituted
Cyclopropanes from (Z/E)-Trisubstituted Enol Acetates ; Journal of
the American Chemical Society; Vol. 145; No. 29; 16176-16185; PMCID
PMC10528827; 10.1021/jacs.3c04870
Stundl, Jan; Martik, Megan L.; et el. (2023) Ancient
vertebrate dermal armor evolved from trunk neural crest ; Proceedings
of the National Academy of Sciences of the United States of America;
Vol. 120; No. 30; e2221120120; PMCID PMC10372632; 10.1073/pnas.2221120120
Shepherd, Doulin C.; Kaplan, Mohammed; et el. (2023) Morphological
remodeling of Coxiella burnetii during its biphasic developmental cycle
revealed by cryo-electron tomography ; iScience; Vol. 26; No. 7;
107210; PMCID PMC10362272; 10.1016/j.isci.2023.107210
Tusche, Anita; Spunt, Robert P.; et el. (2023) Neural
signatures of social inferences predict the number of real-life social
contacts and autism severity ; Nature Communications; Vol. 14; 4399;
PMCID PMC10359299; 10.1038/s41467-023-40078-3
Greenbaum, Shirley; Averbukh, Inna; et el. (2023) A
spatially resolved timeline of the human maternal–fetal interface ;
Nature; Vol. 619; No. 7970; 595-605; PMCID PMC10356615; 10.1038/s41586-023-06298-9
Rouhani, Nina; Stanley, Damian; et el. (2023) Collective
events and individual affect shape autobiographical memory ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 120; No. 29; Art. No. e2221919120; PMCID PMC10629560; 10.1073/pnas.2221919120
Zhu, Ronghui; Santat, Leah A.; et el. (2023) Reconstitution
of morphogen shuttling circuits ; Science Advances; Vol. 9; No. 28;
eadf9336; PMCID PMC10337948; 10.1126/sciadv.adf9336
LaPorte, Matthew G.; Alverez, Celeste; et el. (2023) Optimization
of 1,2,4-Triazole-Based p97 Inhibitors for the Treatment of Cancer ;
ACS Medicinal Chemistry Letters; Vol. 14; No. 7; 977-985; PMCID
PMC10351062; 10.1021/acsmedchemlett.3c00163
Ninova, Maria; Holmes, Hannah; et el. (2023) Pervasive
SUMOylation of heterochromatin and piRNA pathway proteins ; Cell
Genomics; Vol. 3; No. 7; 100329; PMCID PMC10363806; 10.1016/j.xgen.2023.100329
Morton, James T.; Jin, Dong-Min; et el. (2023) Multi-level
analysis of the gut–brain axis shows autism spectrum disorder-associated
molecular and microbial profiles ; Nature Neuroscience; Vol. 26;
No. 7; 1208-1217; PMCID PMC10322709; 10.1038/s41593-023-01361-0
Jiménez Otero, Fernanda; Newman, Dianne K.; et el. (2023) Pyocyanin-dependent
electrochemical inhibition of Pseudomonas aeruginosa biofilms is
synergistic with antibiotic treatment ; mBio; Vol. 14; No. 4;
e0070223; PMCID PMC10470778; 10.1128/mbio.00702-23
Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Daily
SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious
People Due to Viral Load Differences among Specimen Types ;
Microbiology Spectrum; Vol. 11; No. 4; e01295-23; PMCID PMC10434058; 10.1128/spectrum.01295-23
Kandimalla, Pratyush; Omoto, Jaison Jiro; et el. (2023) Lineages
to circuits: the developmental and evolutionary architecture of
information channels into the central complex ; Journal of
Comparative Physiology A; Vol. 209; No. 4; 679-720; PMCID PMC10354165;
10.1007/s00359-023-01616-y
Maška, Martin; Ulman, Vladimír; et el. (2023) The
Cell Tracking Challenge: 10 years of objective benchmarking ; Nature
Methods; PMCID PMC10333123; 10.1038/s41592-023-01879-y
Varshavsky, Alexander; Lewis, Kim; et el. (2023) Deletions
of DNA in cancer and their possible uses for therapy ; Bioessays;
Vol. 45; No. 7; e2300051; PMCID PMC11102808; 10.1002/bies.202300051
Rouressol, Lisa; Briseno, John; et el. (2023) Emergence
of novel genomic regulatory regions associated with light-organ
development in the bobtail squid ; iScience; Vol. 26; No. 7; 107091;
PMCID PMC10329180; 10.1016/j.isci.2023.107091
Weatherbee, Bailey A. T.; Gantner, Carlos W.; et el. (2023) A
model of the post-implantation human embryo derived from pluripotent
stem cells ; Nature; 10.1038/s41586-023-06368-y
Otjacques, Eve; Pissarra, Vasco; et el. (2023) Bioluminescence
in cephalopods: biodiversity, biogeography and research trends ;
Frontiers in Marine Science; Vol. 10; Art. No. 1161049; 10.3389/fmars.2023.1161049
Truong, Lisa; Chen, Yen-Wei; et el. (2023) Single-nucleus
resolution mapping of the adult C. elegans and its application to
elucidate inter- and trans-generational response to alcohol ; Cell
Reports; Vol. 42; No. 6; 112535; PMCID PMC10592506; 10.1016/j.celrep.2023.112535
Li, Yutian; Sarma, Anish A.; et el. (2023) Response
to comment on ‘A conserved strategy for inducing appendage regeneration
in moon jellyfish, Drosophila, and mice’ ; eLife; Vol. 12; e85370;
PMCID PMC10287153; 10.7554/elife.85370
Lee, Peter H.; Anaya, Michael; et el. (2023) An
extracellular vesicle targeting ligand that binds to Arc proteins and
facilitates Arc transport in vivo ; eLife; Vol. 12; Art. No. e82874;
PMCID PMC10289811; 10.7554/elife.82874
Tzung, Keh-Weei; Lalonde, Robert L.; et el. (2023) A median
fin derived from the lateral plate mesoderm and the origin of paired
fins ; Nature; Vol. 618; No. 7965; 543-549; PMCID PMC10266977; 10.1038/s41586-023-06100-w
Huang, Huiqian; Joffrin, Amélie M.; et el. (2023) Chondroitin
4-O-sulfation regulates hippocampal perineuronal nets and social
memory ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 120; No. 24; Art. No. e2301312120; PMCID
PMC10268298; 10.1073/pnas.2301312120
Findlay, Andrew R.; Paing, May M.; et el. (2023) DNAJB6
isoform specific knockdown: Therapeutic potential for limb girdle
muscular dystrophy D1 ; Molecular Therapy - Nucleic Acids; Vol. 32;
937-948; PMCID PMC10280091; 10.1016/j.omtn.2023.05.017
Chen, Xinhong; Wolfe, Damien A.; et el. (2023) Functional
gene delivery to and across brain vasculature of systemic AAVs with
endothelial-specific tropism in rodents and broad tropism in
primates ; Nature Communications; Vol. 14; Art. No. 3345; PMCID
PMC10250345; 10.1038/s41467-023-38582-7
Jones, Jeff; MacKrell, Elliot J.; et el. (2023) Tidyproteomics:
an open-source R package and data object for quantitative proteomics
post analysis and visualization ; BMC Bioinformatics; Vol. 24; Art.
No. 239; PMCID PMC10246047; 10.1186/s12859-023-05360-7
Varshavsky, Alexander; Finley, Daniel; et el. (2023) Dieter
Wolf (1941–2023): a life dedicated to understanding protein quality
control and the ubiquitin‐proteasome system ; EMBO Journal; Vol. 42;
No. 11; Art. No. e114222; 10.15252/embj.2023114222
Liu, Liyuan; Wang, Harris H.; et el. (2023) Highly
efficient and rapid generation of genetic variants ; Nature Methods;
Vol. 20; No. 6; 795-796; PMCID PMC10158673; 10.1038/s41592-023-01869-0
Klumpe, Heidi E.; Garcia-Ojalvo, Jordi; et el. (2023) The
computational capabilities of many-to-many protein interaction
networks ; Cell Systems; Vol. 14; No. 6; 430-446; PMCID PMC10318606;
10.1016/j.cels.2023.05.001
Cai, Karena X.; Phan-Minh, Tung; et el. (2023) Rules
of the Road: Formal Guarantees for Autonomous Vehicles With Behavioral
Contract Design ; IEEE Transactions on Robotics; Vol. 39; No. 3;
1853-1872; 10.1109/tro.2023.3247951
Guan, Charles; Aflalo, Tyson; et el. (2023) Decoding
and geometry of ten finger movements in human posterior parietal cortex
and motor cortex ; Journal of Neural Engineering; Vol. 20; No. 3;
Art. No. 036020; 10.1088/1741-2552/acd3b1
Hung, Shao-Min; Wu, Daw-An; et el. (2023) Extracting
probability in the absence of visual awareness ; Cognitive,
Affective, and Behavioral Neuroscience; Vol. 23; No. 3; 620-630; PMCID
PMC10390606; 10.3758/s13415-022-01057-1
Rossiter, John Anthony; Cassandras, Christos G.; et el. (2023) Control
education for societal-scale challenges: A community roadmap ; Annual
Reviews in Control; Vol. 55; 1-17; 10.1016/j.arcontrol.2023.03.007
Hoffmann, Magnus A. G.; Yang, Zhi; et el. (2023) ESCRT
recruitment to SARS-CoV-2 spike induces virus-like particles that
improve mRNA vaccines ; Cell; Vol. 186; No. 11; 2380-2391; PMCID
PMC10121106; 10.1016/j.cell.2023.04.024
Katti, Raj; Arora, Harpreet Singh; et el. (2023) Hot
Carrier Thermalization and Josephson Inductance Thermometry in a
Graphene-Based Microwave Circuit ; Nano Letters; Vol. 23; No. 10;
4136-4141; 10.1021/acs.nanolett.2c04791
Bronner, Marianne (2023) In
the Spotlight—Established researcher [Marianne Bronner] ; Journal of
Experimental Zoology Part B; 10.1002/jez.b.23190
Inglis, Alison J.; Guna, Alina; et el. (2023) Coupled
protein quality control during nonsense-mediated mRNA decay ; Journal
of Cell Science; Vol. 136; No. 10; Art. No. jcs261216; PMCID
PMC10234110; 10.1242/jcs.261216
Huang, Shan; Wang, Kaihang; et el. (2023) Genome
manipulation by guide-directed Argonaute cleavage ; Nucleic Acids
Research; Vol. 51; No. 8; 4078-4085; PMCID PMC10164581; 10.1093/nar/gkad188
Esyunina, Daria; Okhtienko, Anastasiia; et el. (2023) Specific
targeting of plasmids with Argonaute enables genome editing ; Nucleic
Acids Research; Vol. 51; No. 8; 4086-4099; PMCID PMC10164558; 10.1093/nar/gkad191
Chen, Peiwei and Aravin, Alexei A. (2023) Genetic
control of a sex-specific piRNA program ; Current Biology; Vol. 33;
No. 9; 1825-1835.e3; PMCID PMC10431932; 10.1016/j.cub.2023.03.057
Dutka, Przemysław; Metskas, Lauren Ann; et el. (2023) Structure
of Anabaena flos-aquae gas vesicles revealed by cryo-ET ; Structure;
Vol. 31; No. 5; 518-528; PMCID PMC10185304; 10.1016/j.str.2023.03.011
Banerjee, Navonil; Shih, Pei-Yin; et el. (2023) Differential
processing of a chemosensory cue across life stages sharing the same
valence state in Caenorhabditis elegans ; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 120; No. 19;
Art. No. e2218023120; PMCID PMC10175840; 10.1073/pnas.2218023120
Kaplan, Mohammed; Yao, Qing; et el. (2023) Structure
and Assembly of the Proteus mirabilis Flagellar Motor by Cryo-Electron
Tomography ; International Journal of Molecular Sciences; Vol. 24;
No. 9; Art. No. 8292; PMCID PMC10179241; 10.3390/ijms24098292
Walker, Noah B.; Yan, Yijin; et el. (2023) β2
nAChR Activation on VTA DA Neurons Is Sufficient for Nicotine
Reinforcement in Rats ; eNeuro; Vol. 10; No. 5; Art.
No. ENEURO.0449-22.2023; PMCID PMC10216253; 10.1523/eneuro.0449-22.2023
Olina, Anna; Agapov, Aleksei; et el. (2023) Bacterial
Argonaute Proteins Aid Cell Division in the Presence of Topoisomerase
Inhibitors in Escherichia coli ; Microbiology Spectrum; Vol. 11;
No. 3; Art. No. 04146-22; PMCID PMC10269773; 10.1128/spectrum.04146-22
Ciemniecki, John A. and Newman, Dianne K. (2023) NADH
dehydrogenases are the predominant phenazine reductases in the electron
transport chain of Pseudomonas aeruginosa ; Molecular Microbiology;
Vol. 119; No. 5; 560-573; PMCID PMC11129870; 10.1111/mmi.15049
Marable, Sierra S. and Bronner, Marianne E. (2023) Reprogramming
of trunk neural crest to a cranial crest-like identity alters their
transcriptome and developmental potential ; Differentiation; Vol.
131; 27-37; PMCID PMC10330191; 10.1016/j.diff.2023.04.001
Lemma, Linnea M.; Varghese, Minu; et el. (2023) Spatio-temporal
patterning of extensile active stresses in microtubule-based active
fluids ; PNAS Nexus; Vol. 2; No. 5; Art. No. pgad130; PMCID
PMC10165807; 10.1093/pnasnexus/pgad130
MacNabb, Brendan W. and Rothenberg, Ellen V. (2023) Speed
and navigation control of thymocyte development by the fetal T-cell gene
regulatory network ; Immunological Reviews; Vol. 315; No. 1; 171-196;
PMCID PMC10771342; 10.1111/imr.13190
Kong, Qing; Xia, Shiyu; et el. (2023) Alternative
splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis ;
Science Immunology; Vol. 8; No. 82; Art. No. eadg3196; PMCID
PMC10338320; 10.1126/sciimmunol.adg3196
Sarraf, Namita; Rodriguez, Kellen R.; et el. (2023) Modular
reconfiguration of DNA origami assemblies using tile displacement ;
Science Robotics; Vol. 8; No. 77; Art. No. adf1511; 10.1126/scirobotics.adf1511
Jang, Min Jee and Gradinaru, Viviana (2023) Spatial
tropism profiling of AAV vectors by ultrasensitive sequential FISH in
tissue ; Nature Biotechnology; PMCID PMC9885914; 10.1038/s41587-023-01681-3
Rosenthal, Isabelle A.; Bashford, Luke; et el. (2023) S1
represents multisensory contexts and somatotopic locations within and
outside the bounds of the cortical homunculus ; Cell Reports; Vol.
42; No. 4; 112312; PMCID PMC10544688; 10.1016/j.celrep.2023.112312
Marken, John P. and Murray, Richard M. (2023) Addressable
and adaptable intercellular communication via DNA messaging ; Nature
Communications; Vol. 14; Art. No. 2358; PMCID PMC10126159; 10.1038/s41467-023-37788-z
Shay, Timothy F.; Sullivan, Erin E.; et el. (2023) Primate-conserved
carbonic anhydrase IV and murine-restricted LY6C1 enable blood-brain
barrier crossing by engineered viral vectors ; Science Advances; Vol.
9; No. 16; Art. No. eadg6618; PMCID PMC10115422; 10.1126/sciadv.adg6618
Li, Ya-tang and Meister, Markus (2023) Functional
cell types in the mouse superior colliculus ; eLife; Vol. 12; Art.
No. e82367; PMCID PMC10121220; 10.7554/elife.82367
Campos, Lillian J.; Arokiaraj, Cynthia M.; et el. (2023) Advances
in AAV technology for delivering genetically encoded cargo to the
nonhuman primate nervous system ; Current Research in Neurobiology;
Vol. 4; Art. No. 100086; PMCID PMC10313870; 10.1016/j.crneur.2023.100086
Shrock, Ellen L.; Timms, Richard T.; et el. (2023) Germline-encoded
amino acid–binding motifs drive immunodominant public antibody
responses ; Science; Vol. 380; No. 6640; Art. No. eadc9498; PMCID
PMC10273302; 10.1126/science.adc9498
Kreida, Stefan; Narita, Akihiro; et el. (2023) Cryo-EM
structure of the Agrobacterium tumefaciens T4SS-associated T-pilus
reveals stoichiometric protein-phospholipid assembly ; Structure;
Vol. 31; No. 4; 385-394; PMCID PMC10168017; 10.1016/j.str.2023.02.005
Danelius, Emma; Porter, Nicholas J.; et el. (2023) MicroED
Structure of a Protoglobin Reactive Carbene Intermediate ; Journal of
the American Chemical Society; Vol. 145; No. 13; 7159-7165; PMCID
PMC10080679; 10.1021/jacs.2c12004
Schubert, Rajib; Bae, Taegeun; et el. (2023) CRISPR-clear
imaging of melanin-rich B16-derived solid tumors ; Communications
Biology; Vol. 6; Art. No. 370; PMCID PMC10073193; 10.1038/s42003-023-04614-7
McRose, Darcy L.; Liang, Jinyang; et el. (2023) The
chemical ecology of coumarins and phenazines affects iron acquisition by
pseudomonads ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 120; No. 14; Art. No. e2217951120; PMCID
PMC10083548; 10.1073/pnas.2217951120
Reilly, Douglas K.; Schwarz, Erich M.; et el. (2023) Transcriptomic
profiling of sex-specific olfactory neurons reveals subset-specific
receptor expression in Caenorhabditis elegans ; Genetics; Vol. 223;
No. 4; iyad026; PMCID PMC10319972; 10.1093/genetics/iyad026
Kang, Wei; Burns, John; et el. (2023) Advances
in theoretical and computational nonlinear control — Dedicated to the
80th birthday of Professor Arthur J. Krener ; Systems and Control
Letters; Vol. 174; Art. No. 105492; 10.1016/j.sysconle.2023.105492
Upchurch, Sean; Palumbo, Emilio; et el. (2023) RNAget:
an API to securely retrieve RNA quantifications ; Bioinformatics;
Vol. 39; No. 4; Art. No. btad126; PMCID PMC10081869; 10.1093/bioinformatics/btad126
Kagan, Jonathan C.; Rothenberg, Ellen V.; et el. (2023) Cold
Spring Harbor Laboratory 2022: emerging insights and viewpoints in
immunology ; Trends in Immunology; Vol. 44; No. 4; 248-255; 10.1016/j.it.2023.02.003
Mangenot, Xavier; Xie, Hao; et el. (2023) ²H-²H
clumping in molecular hydrogen method and preliminary results ;
Chemical Geology; Vol. 621; Art. No. 121278; 10.1016/j.chemgeo.2022.121278
Koontz, Alison; Urrutia, Hugo A.; et el. (2023) Making
a head: Neural crest and ectodermal placodes in cranial sensory
development ; Seminars in Cell and Developmental Biology; Vol. 138;
15-27; PMCID PMC10224775; 10.1016/j.semcdb.2022.06.009
Nichols, Aaron L.; Blumenfeld, Zack; et el. (2023) Selective
Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in
Cytoplasm, Endoplasmic Reticulum, and Membrane ; Journal of
Neuroscience; Vol. 43; No. 13; 2222-2241; PMCID PMC10072302; 10.1523/jneurosci.1519-22.2022
Sperling, A. L. and Glover, D. M. (2023) Parthenogenesis
in dipterans: a genetic perspective ; Proceedings of the Royal
Society of London. Series B, Biological Sciences; Vol. 290; No. 1995;
Art. No. 20230261; PMCID PMC10031431; 10.1098/rspb.2023.0261
Fenelon, Kelli D.; Gao, Fan; et el. (2023) Cell-specific
occupancy dynamics between the pioneer-like factor Opa/ZIC and
Ocelliless/OTX regulate early head development in embryos ; Frontiers
in Cell and Developmental Biology; Vol. 11; Art. No. 1126507; PMCID
PMC10083704; 10.3389/fcell.2023.1126507
Baltimore, David (2023) Paul
Berg (1926–2023) Father of genetic engineering ; Science; Vol. 379;
No. 6637; 1095; 10.1126/science.adh2943
Braet, Sean M.; Buckley, Theresa S. C.; et el. (2023) Timeline
of changes in spike conformational dynamics in emergent SARS-CoV-2
variants reveal progressive stabilization of trimer stalk with altered
NTD dynamics ; eLife; Vol. 12; Art. No. e82584; PMCID PMC10049203; 10.7554/elife.82584
Le Guerroué, François; Bunker, Eric N.; et el. (2023) TNIP1
inhibits selective autophagy via bipartite interaction with LC3/GABARAP
and TAX1BP1 ; Molecular Cell; Vol. 83; No. 6; 927-941.e8; PMCID
PMC10112281; 10.1016/j.molcel.2023.02.023
Cabeen, Ryan P.; Toga, Arthur W.; et el. (2023) Mapping
frontoinsular cortex from diffusion microstructure ; Cerebral Cortex;
Vol. 33; No. 6; 2715-2733; PMCID PMC10016069; 10.1093/cercor/bhac237
Rosencrans, William M. and Chan, David C. (2023) Fusion
activators enhance mitochondrial function ; Mitochondrial
Communications; Vol. 1; 33-34; PMCID PMC10956541; 10.1016/j.mitoco.2023.03.001
Schulte, Samuel J.; Huang, Jining; et el. (2023) Hybridization
Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home
SARS-CoV-2 Testing ; ACS Infectious Diseases; Vol. 9; No. 3; 450-458;
PMCID PMC9924079; 10.1021/acsinfecdis.2c00472
Mattick, John S.; Amaral, Paulo P.; et el. (2023) Long
non-coding RNAs: definitions, functions, challenges and
recommendations ; Nature Reviews Molecular Cell Biology; Vol. 24;
No. 6; 430-447; PMCID PMC10213152; 10.1038/s41580-022-00566-8
Arakaki, Xianghong; Arechavala, Rebecca J.; et el. (2023) The
connection between heart rate variability (HRV), neurological health,
and cognition: A literature review ; Frontiers in Neuroscience; Vol.
17; Art. No. 1055445; PMCID PMC10014754; 10.3389/fnins.2023.1055445
Scott, Ryan T.; Sanders, Lauren M.; et el. (2023) Biomonitoring
and precision health in deep space supported by artificial
intelligence ; Nature Machine Intelligence; Vol. 5; No. 3; 196-207;
10.1038/s42256-023-00617-5
Cable, Jennifer; Balachandran, Siddharth; et el. (2023) Viral
immunity: Basic mechanisms and therapeutic applications—a Keystone
Symposia report ; Annals of the New York Academy of Sciences; Vol.
1521; No. 1; 32-45; 10.1111/nyas.14960
Liang, William; Guo, Hongsun; et el. (2023) Auditory
Mondrian masks the airborne-auditory artifact of focused ultrasound
stimulation in humans ; Brain Stimulation; Vol. 16; No. 2; 604-606;
PMCID PMC10314733; 10.1016/j.brs.2023.03.002
Guna, Alina; Hazu, Masami; et el. (2023) A
TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic
Reticulum ; Cold Spring Harbor Perspectives in Biology; Vol. 15;
No. 3; Art. No. a041252; PMCID PMC9979854; 10.1101/cshperspect.a041252
Boktor, Joseph C.; Sharon, Gil; et el. (2023) Integrated
Multi‐Cohort Analysis of the Parkinson’s Disease Gut Metagenome ;
Movement Disorders; Vol. 38; No. 3; 399-409; 10.1002/mds.29300
Mehrotra, Pihu; Ikhapoh, Izuagie; et el. (2023) Wnt/BMP
Mediated Metabolic Reprogramming Preserves Multipotency of Neural
Crest-Like Stem Cells ; Stem Cells; Vol. 41; No. 3; 287-305; PMCID
PMC10020983; 10.1093/stmcls/sxad001
Holman, Elizabeth A.; Krishnan, Harinarayan; et el. (2023) Toward
implementing autonomous adaptive data acquisition for scanning
hyperspectral imaging of biological systems ; Applied Physics
Reviews; Vol. 10; No. 1; Art. No. 011319; 10.1063/5.0123278
Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Extreme
differences in SARS-CoV-2 viral loads among respiratory specimen types
during presumed pre-infectious and infectious periods ; PNAS Nexus;
Vol. 2; No. 3; pgad033; PMCID PMC10013338; 10.1093/pnasnexus/pgad033
Ma, Dingbang; Herndon, Nicholas; et el. (2023) Neural
connectivity molecules best identify the heterogeneous clock and
dopaminergic cell types in the Drosophila adult brain ; Science
Advances; Vol. 9; No. 8; Art. No. eade8500; PMCID PMC9946362; 10.1126/sciadv.ade8500
Gristick, Harry B.; Hartweger, Harald; et el. (2023) CD4
binding site immunogens elicit heterologous anti–HIV-1 neutralizing
antibodies in transgenic and wild-type animals ; Science Immunology;
Vol. 8; No. 80; eade6364; PMCID PMC10202037; 10.1126/sciimmunol.ade6364
Pandey, Ayush; Rodriguez, Makena L.; et el. (2023) Characterization
of Integrase and Excisionase Activity in a Cell-Free Protein Expression
System Using a Modeling and Analysis Pipeline ; ACS Synthetic
Biology; Vol. 12; No. 2; 511-523; 10.1021/acssynbio.2c00534
Zhang, Juner; Maggiolo, Ailiena O.; et el. (2023) Chemodivergent
C(sp³)–H and C(sp²)–H cyanomethylation using engineered carbene
transferases ; Nature Catalysis; Vol. 6; No. 2; 152-160; PMCID
PMC9983643; 10.1038/s41929-022-00908-x
Banks, Rachel A.; Galstyan, Vahe; et el. (2023) Motor
processivity and speed determine structure and dynamics of
microtubule-motor assemblies ; eLife; Vol. 12; Art. No. e79402; PMCID
PMC10014072; 10.7554/elife.79402
Rusch, Tessa; Han, Yanting; et el. (2023) COVID-Dynamic: a
large-scale longitudinal study of socioemotional and behavioral change
across the pandemic ; Scientific Data; Vol. 10; Art. No. 71; PMCID
PMC9897616; 10.1038/s41597-022-01901-6
Thomson, Matt (2023) Spin
glasses, error correcting codes, and synchronization of human stem cell
organoids ; Cell; Vol. 186; No. 3; 461-463; 10.1016/j.cell.2023.01.006
Pollak, Daniel J.; Chawla, Gautam; et el. (2023) First
steps into the cloud: Using Amazon data storage and computing with
Python notebooks ; PLoS ONE; Vol. 18; No. 2; Art. No. e0278316; PMCID
PMC9910747; 10.1371/journal.pone.0278316
Laso-Pérez, Rafael; Wu, Fabai; et el. (2023) Evolutionary
diversification of methanotrophic ANME-1 archaea and their expansive
virome ; Nature Microbiology; Vol. 8; No. 2; 231-245; PMCID
PMC9894754; 10.1038/s41564-022-01297-4
Apostolou, Effie; Blau, Helen; et el. (2023) Progress
and challenges in stem cell biology ; Nature Cell Biology; Vol. 25;
No. 2; 203-206; 10.1038/s41556-023-01087-y
Shin, Boyoung and Rothenberg, Ellen V. (2023) Multi-modular
structure of the gene regulatory network for specification and
commitment of murine T cells ; Frontiers in Immunology; Vol. 14; Art.
No. 1108368; PMCID PMC9928580; 10.3389/fimmu.2023.1108368
Carter, Alyssa M.; Winnett, Alexander Viloria; et el. (2023) Laboratory
Evaluation Links Some False-Positive COVID-19 Antigen Test Results
Observed in a Field Study to a Specific Lot of Test Strips ; Open
Forum Infectious Diseases; Vol. 10; No. 1; Art. No. ofac701; PMCID
PMC9887260; 10.1093/ofid/ofac701
Lin, Chujun and Adolphs, Ralph (2023) Trait
impressions from faces depend on the goals of the perceiver ; British
Journal of Psychology; 10.1111/bjop.12618
Schaus, Lucas; Das, Anuvab; et el. (2023) Protoglobin-Catalyzed
Formation of cis-Trifluoromethyl-Substituted Cyclopropanes by Carbene
Transfer ; Angewandte Chemie International Edition; Vol. 62; No. 4;
Art. No. e202208936; PMCID PMC9894577; 10.1002/anie.202208936
Huang, Kuan-Ying A.; Chen, Xiaorui; et el. (2023) Structural
basis for a conserved neutralization epitope on the receptor-binding
domain of SARS-CoV-2 ; Nature Communications; Vol. 14; Art. No. 311;
PMCID PMC9852238; 10.1038/s41467-023-35949-8
Sohn, Won Joon; Lim, Jeffrey; et el. (2023) Benchtop
and bedside validation of a low-cost programmable cortical stimulator in
a testbed for bi-directional brain-computer-interface research ;
Frontiers in Neuroscience; Vol. 16; Art. No. 1075971; PMCID PMC9878125;
10.3389/fnins.2022.1075971
Earley, Zachary M.; Lisicka, Wioletta; et el. (2023) GATA4
controls regionalization of tissue immunity and commensal-driven
immunopathology ; Immunity; Vol. 56; No. 1; 43-57.e10; 10.1016/j.immuni.2022.12.009
Ousey, James; Boktor, Joseph C.; et el. (2023) Gut
microbiota suppress feeding induced by palatable foods ; Current
Biology; Vol. 33; No. 1; 147-157.e7; PMCID PMC9839363; 10.1016/j.cub.2022.10.066
Meyerowitz, Elliot M. (2023) Elliot
M. Meyerowitz ; Current Biology; Vol. 33; No. 1; R4-R6; 10.1016/j.cub.2022.11.040
Nair, Aditya; Karigo, Tomomi; et el. (2023) An
approximate line attractor in the hypothalamus encodes an aggressive
state ; Cell; Vol. 186; No. 1; 178-193; PMCID PMC9990527; 10.1016/j.cell.2022.11.027
Utter, D. R. and Orphan, V. J. (2023) Gifts
hidden in shadowy genome islands ; Cell; Vol. 186; No. 1; 5-7; 10.1016/j.cell.2022.12.001
Luebbert, Laura and Pachter, Lior (2023) Efficient
querying of genomic reference databases with gget ; Bioinformatics;
Vol. 39; No. 1; Art. No. btac836; PMCID PMC9835474; 10.1093/bioinformatics/btac836
Murata, Daisuke; Grunseich, Christopher; et el. (2023) A
Heterozygous Mutation in MFF Associated with a Mild Mitochondrial
Phenotype ; Journal of Neuromuscular Diseases; Vol. 10; No. 1;
107-118; 10.3233/jnd-221532
Amadei, Gianluca and Glover, David M. (2023) Behind
the developing brains and beating hearts of stem cell-derived embryo
models ; Open Biology; Vol. 13; No. 1; Art. No. rsob.220325; PMCID
PMC9833437; 10.1098/rsob.220325
Gálvez-Merchán, Ángel; Min, Kyung Hoi (Joseph); et el. (2023) Metadata
retrieval from sequence databases with ffq ; Bioinformatics; Vol. 39;
No. 1; Art. No. btac667; PMCID PMC9883619; 10.1093/bioinformatics/btac667
Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Antibody
Recognition of CD4-Induced Open HIV-1 Env Trimers ; Journal of
Virology; Vol. 96; No. 24; e0108222; PMCID PMC9769388; 10.1128/jvi.01082-22
Cabrera, Alan; Edelstein, Hailey I.; et el. (2022) The
sound of silence: Transgene silencing in mammalian cell engineering ;
Cell Systems; Vol. 13; No. 12; 950-973; PMCID PMC9880859; 10.1016/j.cels.2022.11.005
Winnett, Alexander Viloria; Porter, Michael K.; et el. (2022) Morning
SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher
Viral Loads in Saliva and Nasal Swabs upon Waking ; Microbiology
Spectrum; Vol. 10; No. 6; e03873-22; PMCID PMC9769854; 10.1128/spectrum.03873-22
Flamholz, Avi I.; Saccomano, Samuel; et el. (2022) Optical
O₂ Sensors Also Respond to Redox Active Molecules Commonly Secreted by
Bacteria ; mBio; Vol. 13; No. 6; Art. No. e0207622; PMCID PMC9765510;
10.1128/mbio.02076-22
Wilbert, Steven A. and Newman, Dianne K. (2022) The
contrasting roles of nitric oxide drive microbial community organization
as a function of oxygen presence ; Current Biology; Vol. 32; No. 24;
5221-5234.e4; PMCID PMC9772256; 10.1016/j.cub.2022.10.008
Lin, Lizhu; Pinto, Antonella; et el. (2022) ETS1
loss in mice impairs cardiac outflow tract septation via a cell
migration defect autonomous to the neural crest ; Human Molecular
Genetics; Vol. 31; No. 24; 4217-4227; PMCID PMC10148727; 10.1093/hmg/ddac174
Whitehead, Samuel C.; Leone, Sofia; et el. (2022) Neuromuscular
embodiment of feedback control elements in Drosophila flight ;
Science Advances; Vol. 8; No. 50; Art. No. eabo7461; PMCID PMC9750141;
10.1126/sciadv.abo7461
Hay, Bruce A. and Guo, Ming (2022) Gene
drive-mediated population elimination for biodiversity conservation.
When you come to a fork in the road, take it ; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 119;
No. 51; Art. No. e2218020119; PMCID PMC9907123; 10.1073/pnas.2218020119
Fan, Chengcheng; Cohen, Alexander A.; et el. (2022) Neutralizing
monoclonal antibodies elicited by mosaic RBD nanoparticles bind
conserved sarbecovirus epitopes ; Immunity; Vol. 55; No. 12;
2419-2435.e10; PMCID PMC9606073; 10.1016/j.immuni.2022.10.019
Piacentino, Michael L.; Hutchins, Erica J.; et el. (2022) Temporal
changes in plasma membrane lipid content induce endocytosis to regulate
developmental epithelial-to-mesenchymal transition ; Proceedings of
the National Academy of Sciences of the United States of America; Vol.
119; No. 51; Art. No. e2212879119; PMCID PMC9907157; 10.1073/pnas.2212879119
Gorin, Gennady; Vastola, John J.; et el. (2022) Interpretable
and tractable models of transcriptional noise for the rational design of
single-molecule quantification experiments ; Nature Communications;
Vol. 13; Art. No. 7620; PMCID PMC9734650; 10.1038/s41467-022-34857-7
Nicolas, William J.; Jensen, Grant J.; et el. (2022) Focused
Ion Beam Milling and Cryo-electron Tomography Methods to Study the
Structure of the Primary Cell Wall in Allium cepa ; Bio-protocol;
Vol. 12; No. 23; Art. No. e4559; PMCID PMC9729855; 10.21769/bioprotoc.4559
Saltoun, Karin; Adolphs, Ralph; et el. (2022) Dissociable
brain structural asymmetry patterns reveal unique phenome-wide
profiles ; Nature Human Behaviour; 10.1038/s41562-022-01461-0
Parker, Joseph (2022) The
bank most tangled [book review] ; Current Biology; Vol. 32; No. 24;
R1328-R1330; 10.1016/j.cub.2022.10.023
Alfonzo, Edwin; Das, Anuvab; et el. (2022) New
additions to the arsenal of biocatalysts for noncanonical amino acid
synthesis ; Current Opinion in Green and Sustainable Chemistry; Vol.
38; Art. No. 100701; PMCID PMC9770695; 10.1016/j.cogsc.2022.100701
Wang, Sheng; Garcia-Ojalvo, Jordi; et el. (2022) Periodic
spatial patterning with a single morphogen ; Cell Systems; Vol. 13;
No. 12; 1033-1047.e7; 10.1016/j.cels.2022.11.001
Petrovic, Stefan; Mobbs, George W.; et el. (2022) Structure
and Function of the Nuclear Pore Complex ; Cold Spring Harbor
Perspectives in Biology; Vol. 14; No. 12; Art. No. a041264; 10.1101/cshperspect.a041264
Barnum, George and Hong, Elizabeth J. (2022) Olfactory
coding ; Current Biology; Vol. 32; No. 23; R1296-R1301; 10.1016/j.cub.2022.10.067
Boktor, Joseph C.; Adame, Mark D.; et el. (2022) Global
metabolic profiles in a non-human primate model of maternal immune
activation: implications for neurodevelopmental disorders ; Molecular
Psychiatry; Vol. 27; No. 12; 4959-4973; PMCID PMC9772216; 10.1038/s41380-022-01752-y
Goronzy, Isabel N.; Quinodoz, Sofia A.; et el. (2022) Simultaneous
mapping of 3D structure and nascent RNAs argues against nuclear
compartments that preclude transcription ; Cell Reports; Vol. 41;
No. 9; Art. No. 111730; PMCID PMC9793828; 10.1016/j.celrep.2022.111730
Kovacs, Levente; Fatalska, Agnieszka; et el. (2022) Targeting
Drosophila Sas6 to mitochondria reveals its high affinity for Gorab ;
Biology Open; Vol. 11; No. 11; Art. No. bio059545; PMCID PMC9836085; 10.1242/bio.059545
Williams, Rory L. and Murray, Richard M. (2022) Integrase-mediated
differentiation circuits improve evolutionary stability of burdensome
and toxic functions in E. coli ; Nature Communications; Vol. 13; Art.
No. 6822; PMCID PMC9649629; 10.1038/s41467-022-34361-y
Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et el. (2022) A
prebiotic diet modulates microglial states and motor deficits in
α-synuclein overexpressing mice ; eLife; Vol. 11; Art. No. e81453;
PMCID PMC9668333; 10.7554/elife.81453
Suresh, Pooja; Galstyan, Vahe; et el. (2022) Modeling
and mechanical perturbations reveal how spatially regulated anchorage
gives rise to spatially distinct mechanics across the mammalian
spindle ; eLife; Vol. 11; Art. No. e79558; PMCID PMC9642996; 10.7554/elife.79558
Endo, Fumito; Kasai, Atsushi; et el. (2022) Molecular
basis of astrocyte diversity and morphology across the CNS in health and
disease ; Science; Vol. 378; No. 6619; Art. No. adc9020; 10.1126/science.adc9020
McGlynn, Shawn Erin; Perkins, Guy; et el. (2022) A
Cristae-Like Microcompartment in Desulfobacterota ; mBio; Vol. 13;
No. 6; Art. No. 01613-22; PMCID PMC9764997; 10.1128/mbio.01613-22
Bokhari, Rihana S.; Beheshti, Afshin; et el. (2022) Looking
on the Horizon; Potential and Unique Approaches to Developing Radiation
Countermeasures for Deep Space Travel ; Life Sciences in Space
Research; Vol. 35; 105-112; 10.1016/j.lssr.2022.08.003
Rothenberg, Ellen V. (2022) Transcription
factors specifically control change ; Genes and Development; Vol. 36;
No. 21-24; 1097-1099; PMCID PMC9851400; 10.1101/gad.350308.122
Foy, Susan; Jacoby, Kyle; et el. (2022) 1478 A
phase I study of personalized adoptive TCR T cell therapy in patients
with solid tumors: safety, efficacy, and T cell trafficking to tumors of
non-virally gene edited T cells ; Journal for ImmunoTherapy of
Cancer; Vol. 10; No. S2; A1536; 10.1136/jitc-2022-sitc2022.1478
Brugman, Katherine I.; Susoy, Vladislav; et el. (2022) PEZO-1
and TRP-4 mechanosensors are involved in mating behavior in
Caenorhabditis elegans ; PNAS Nexus; Vol. 1; No. 5; Art. No. pgac213;
PMCID PMC9802279; 10.1093/pnasnexus/pgac213
Vijayan, Vikram; Wang, Zikun; et el. (2022) An
internal expectation guides Drosophila egg-laying decisions ; Science
Advances; Vol. 8; No. 43; eabn3852; 10.1126/sciadv.abn3852
Boltje, Daan B.; Hoogenboom, Jacob P.; et el. (2022) A
cryogenic, coincident fluorescence, electron, and ion beam
microscope ; eLife; Vol. 11; Art. No. e82891; PMCID PMC9714966; 10.7554/elife.82891
Guna, Alina; Stevens, Taylor A.; et el. (2022) MTCH2
is a mitochondrial outer membrane protein insertase ; Science; Vol.
378; No. 6617; 317-322; PMCID PMC9674023; 10.1126/science.add1856
Athavale, Soumitra V.; Gao, Shilong; et el. (2022) Enzymatic
Nitrogen Insertion into Unactivated C-H Bonds ; Journal of the
American Chemical Society; Vol. 144; No. 41; 19097-19105; PMCID
PMC9612832; 10.1021/jacs.2c08285
Metskas, Lauren Ann; Wilfong, Rosalie; et el. (2022) Subtomogram
averaging for biophysical analysis and supramolecular context ;
Journal of Structural Biology: X; Vol. 6; Art. No. 100076; PMCID
PMC9596874; 10.1016/j.yjsbx.2022.100076
Dam, Kim-Marie A.; Barnes, Christopher O.; et el. (2022) HIV-1
CD4-binding site germline antibody-Env structures inform vaccine
design ; Nature Communications; Vol. 13; Art. No. 6123; PMCID
PMC9576718; 10.1038/s41467-022-33860-2
Zocchi, Dhruv; Ye, Emily S.; et el. (2022) Parallel
encoding of CO₂ in attractive and aversive glomeruli by selective
lateral signaling between olfactory afferents ; Current Biology; Vol.
32; No. 19; 4225-4239.e7; PMCID PMC9561050; 10.1016/j.cub.2022.08.025
Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse
embryo model derived exclusively from embryonic stem cells undergoes
neurulation and heart development ; Cell Stem Cell; Vol. 29; No. 10;
1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse
embryo model derived exclusively from embryonic stem cells undergoes
neurulation and heart development ; Cell Stem Cell; Vol. 29; No. 10;
1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
Amadei, Gianluca; Handford, Charlotte E.; et el. (2022) Embryo model
completes gastrulation to neurulation and organogenesis ; Nature;
Vol. 610; No. 7930; 143-153; PMCID PMC9534772; 10.1038/s41586-022-05246-3
Hutchins, Erica J.; Gandhi, Shashank; et el. (2022) RNA-binding
protein Elavl1/HuR is required for maintenance of cranial neural crest
specification ; eLife; Vol. 11; Art. No. e63600; PMCID PMC9529247; 10.7554/elife.63600
Puskar, Ryan; Du Truong, Chloe; et el. (2022) Molecular
asymmetry of a photosynthetic supercomplex from green sulfur
bacteria ; Nature Communications; Vol. 13; Art. No. 5824; PMCID
PMC9529944; 10.1038/s41467-022-33505-4
Rothenberg, Ellen V. (2022) The
Heart of the Machine: Construction of T Cell Identity, Made
Accessible ; Journal of Immunology; Vol. 209; No. 7; 1235-1236; 10.4049/jimmunol.2200264
LeBlanc, Amy K.; Mazcko, Christina N.; et el. (2022) Comparative
Oncology Assessment of a Novel Inhibitor of Valosin-Containing Protein
in Tumor-Bearing Dogs ; Molecular Cancer Therapeutics; Vol. 21;
No. 10; 1510-1523; PMCID PMC9538592; 10.1158/1535-7163.mct-22-0167
Parker, Joseph (2022) Interactions
between insect species: their evolution and mechanistic
architecture ; Current Opinion in Insect Science; Vol. 53; Art.
No. 100963; 10.1016/j.cois.2022.100963
Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem-cell-based
human and mouse embryo models ; Current Opinion in Genetics and
Development; Vol. 76; 101970; PMCID PMC10309046; 10.1016/j.gde.2022.101970
Guo, Jimmy K. and Guttman, Mitchell (2022) Regulatory
non-coding RNAs: everything is possible, but what is important? ;
Nature Methods; Vol. 19; No. 10; 1156-1159; 10.1038/s41592-022-01629-6
Spero, Melanie A.; Jones, Jeff; et el. (2022) Mechanisms
of chlorate toxicity and resistance in Pseudomonas aeruginosa ;
Molecular Microbiology; Vol. 118; No. 4; 321-335; PMCID PMC9589919; 10.1111/mmi.14972
Dai, Wenting; Wang, Zhichao; et el. (2022) Metabolic
reprogramming in the OPA1-deficient cells ; Cellular and Molecular
Life Sciences; Vol. 79; No. 10; Art. No. 517; 10.1007/s00018-022-04542-5
Siepe, Dirk H.; Henneberg, Lukas T.; et el. (2022) Identification
of orphan ligand-receptor relationships using a cell-based CRISPRa
enrichment screening platform ; eLife; Vol. 11; Art. No. e81398;
PMCID PMC9578707; 10.7554/elife.81398
Keleş, Ümit; Kliemann, Dorit; et el. (2022) Atypical
gaze patterns in autistic adults are heterogeneous across but reliable
within individuals ; Molecular Autism; Vol. 13; No. 1; Art. No. 39;
PMCID PMC9508778; 10.1186/s13229-022-00517-2
Hung, Shao-Min; Wu, Daw-An; et el. (2022) Stronger
implicit interference in cognitively healthy older participants with
higher risk of Alzheimer’s disease ; Alzheimer’s & Dementia:
Diagnosis, Assessment & Disease Monitoring; Vol. 14; Art.
No. e12340; PMCID PMC9489163; 10.1002/dad2.12340
Guan, Charles; Aflalo, Tyson; et el. (2022) Stability
of motor representations after paralysis ; eLife; Vol. 11; Art.
No. 74478; PMCID PMC9555862; 10.7554/elife.74478
Hu, Chelsea Y. and Murray, Richard M. (2022) Layered
feedback control overcomes performance trade-off in synthetic
biomolecular networks ; Nature Communications; Vol. 13; Art.
No. 5393; PMCID PMC9474519; 10.1038/s41467-022-33058-6
Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem
cell-derived synthetic embryos self-assemble by exploiting cadherin
codes and cortical tension ; Nature Cell Biology; Vol. 24; No. 9;
1341-1349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
Jang, Seongmin; Shen, Hao K.; et el. (2022) Structural
basis of receptor usage by the engineered capsid AAV-PHP.eB ;
Molecular Therapy - Methods & Clinical Development; Vol. 26;
343-354; PMCID PMC9382559; 10.1016/j.omtm.2022.07.011
Goertsen, David; Goeden, Nick; et el. (2022) Targeting
the lung epithelium after intravenous delivery by directed evolution of
underexplored sites on the AAV capsid ; Molecular Therapy - Methods
& Clinical Development; Vol. 26; 331-342; PMCID PMC9372736; 10.1016/j.omtm.2022.07.010
Pakharukova, Natalia; Malmi, Henri; et el. (2022) Archaic
chaperone-usher pili self-secrete into superelastic zigzag springs ;
Nature; Vol. 609; 335-340; 10.1038/s41586-022-05095-0
Knox, Hailey J.; Rego Campello, Hugo; et el. (2022) Characterization
of Binding Site Interactions and Selectivity Principles in the α3β4
Nicotinic Acetylcholine Receptor ; Journal of the American Chemical
Society; Vol. 144; No. 35; 16101-16117; 10.1021/jacs.2c06495
Zhang, Yide; Shen, Binglin; et el. (2022) Ultrafast
and hypersensitive phase imaging of propagating internodal current flows
in myelinated axons and electromagnetic pulses in dielectrics ;
Nature Communications; Vol. 13; Art. No. 5247; PMCID PMC9448739; 10.1038/s41467-022-33002-8
Zhang, Haifeng; Shang, Renjie; et el. (2022) Evolution
of a chordate-specific mechanism for myoblast fusion ; Science
Advances; Vol. 8; No. 35; Art. No. eadd2696; 10.1126/sciadv.add2696
Kastriti, Maria Eleni; Faure, Louis; et el. (2022) Schwann
cell precursors represent a neural crest‐like state with biased
multipotency ; EMBO Journal; Vol. 41; No. 17; Art. no. e108780; PMCID
PMC9434083; 10.15252/embj.2021108780
Wegener, Gunter; Laso-Pérez, Rafael; et el. (2022) Anaerobic
Degradation of Alkanes by Marine Archaea ; Annual Review of
Microbiology; Vol. 76; No. 1; 553-577; 10.1146/annurev-micro-111021-045911
Chure, Griffin; Banks, Rachel A.; et el. (2022) Anthroponumbers.org:
A quantitative database of human impacts on Planet Earth ; Patterns;
Vol. 3; No. 9; Art. No. 100552; PMCID PMC9481956; 10.1016/j.patter.2022.100552
Wagle, Mahendra; Zarei, Mahdi; et el. (2022) Brain-wide
perception of the emotional valence of light is regulated by distinct
hypothalamic neurons ; Molecular Psychiatry; Vol. 27; No. 9;
3777-3793; PMCID PMC9613822; 10.1038/s41380-022-01567-x
Ravanfar, Raheleh; Sheng, Yuling; et el. (2022) Surface
cysteines could protect the SARS-CoV-2 main protease from oxidative
damage ; Journal of Inorganic Biochemistry; Vol. 234; Art.
No. 111886; PMCID PMC9161685; 10.1016/j.jinorgbio.2022.111886
Seo, Jai Woong; Ajenjo, Javier; et el. (2022) Multimodal
imaging of capsid and cargo reveals differential brain targeting and
liver detargeting of systemically-administered AAVs ; Biomaterials;
Vol. 288; Art. No. 121701; PMCID PMC9621732; 10.1016/j.biomaterials.2022.121701
Aronson, Heidi S.; Monteverde, Danielle R.; et el. (2022) Sulfur
cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek,
CA ; Geobiology; Vol. 20; No. 5; 707-725; 10.1111/gbi.12512
Parker, Joseph (2022) Transitional
morphology and Afrotropical affinity of a bythinoplectine rove beetle
from the early Eocene of India (Coleoptera: Staphylinidae:
Pselaphinae) ; Palaeoentomology; Vol. 5; No. 5; 452-460; 10.11646/palaeoentomology.5.5.6
Gorin, Gennady; Fang, Meichen; et el. (2022) RNA
velocity unraveled ; PLOS Computational Biology; Vol. 18; No. 9; Art.
No. e1010492; PMCID PMC9499228; 10.1371/journal.pcbi.1010492
Foster, Jamie S. and McFall-Ngai, Margaret J. (2022) Introduction
to the special issue in honor of the contributions of Lynn Margulis
(1938-2011) Lynn Margulis: a 20th-Century scientist and a visionary of
biology ; Symbiosis; 10.1007/s13199-022-00867-8
Liang, Xuan; Weberling, Antonia; et el. (2022) E-cadherin
mediates apical membrane initiation site localisation during de novo
polarisation of epithelial cavities ; EMBO Journal; Art No. e111021;
10.15252/embj.2022111021
Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain–Computer
Interfaces for Treatment of Focal Dystonia ; Movement Disorders; 10.1002/mds.29178
Yang, Bin; Karigo, Tomomi; et el. (2022) Transformations
of neural representations in a social behaviour network ; Nature;
Vol. 608; No. 7924; 741-749; PMCID PMC9529293; 10.1038/s41586-022-05057-6
Harrison, Neil L.; Abbott, Geoffrey W.; et el. (2022) How
many SARS-CoV-2 “viroporins” are really ion channels? ;
Communications Biology; Vol. 5; No. 1; 10.1038/s42003-022-03669-2
Sawada, Masahiro; Adolphs, Ralph; et el. (2022) Mapping
effective connectivity of human amygdala subdivisions with intracranial
stimulation ; Nature Communications; Vol. 13; No. 1; Art. No. 4909;
10.1038/s41467-022-32644-y
Yang, Chien-I; Zhu, Zikun; et el. (2022) System-wide
analyses reveal essential roles of N-terminal protein modification in
bacterial membrane integrity ; iScience; Vol. 25; No. 8; Art.
No. 104756; PMCID PMC9356101; 10.1016/j.isci.2022.104756
Schneider, René; Ehrhardt, David W.; et el. (2022) Tethering
of cellulose synthase to microtubules dampens mechano-induced
cytoskeletal organization in Arabidopsis pavement cells ; Nature
Plants; Vol. 8; No. 9; 1064-1073; 10.1038/s41477-022-01218-7
Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Rubisco
forms a lattice inside alpha-carboxysomes ; Nature Communications;
Vol. 13; No. 1; Art. No. 4863; 10.1038/s41467-022-32584-7
Murrow, Lyndsay M.; Weber, Robert J.; et el. (2022) Mapping
hormone-regulated cell-cell interaction networks in the human breast at
single-cell resolution ; Cell Systems; Vol. 13; No. 8; 644-664.e8;
PMCID PMC9590200; 10.1016/j.cels.2022.06.005
Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Discovery
of a Novel Inner Membrane-Associated Bacterial Structure Related to the
Flagellar Type III Secretion System ; Journal of Bacteriology; Vol.
204; No. 8; e0014422; PMCID PMC9380563; 10.1128/jb.00144-22
Barnes, Christopher O.; Schoofs, Till; et el. (2022) A
naturally arising broad and potent CD4-binding site antibody with low
somatic mutation ; Science Advances; Vol. 8; No. 32; Art.
No. eabp8155; 10.1126/sciadv.abp8155
Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain-Computer
Interfaces for Treatment of Focal Dystonia ; Movement Disorders; 10.1002/mds.29178
Galton, Riley; Fejes-Tóth, Katalin; et el. (2022) Co-option
of the piRNA pathway to regulate neural crest specification ; Science
Advances; Vol. 8; No. 32; Art. No. abn1441; 10.1126/sciadv.abn1441
Lisitskaya, Lidiya; Shin, Yeonoh; et el. (2022) Programmable
RNA targeting by bacterial Argonaute nucleases with unconventional guide
binding and cleavage specificity ; Nature Communications; Vol. 13;
Art. No. 4624; PMCID PMC9360449; 10.1038/s41467-022-32079-5
Chai, Cynthia M.; Park, Heenam; et el. (2022) Brain-wide
bidirectional neuropeptide modulation of individual neuron classes
regulates a developmental decision ; Current Biology; Vol. 32;
No. 15; 3365-3373; PMCID PMC10588560; 10.1016/j.cub.2022.05.048
Cohen, Alexander A.; van Doremalen, Neeltje; et el. (2022) Mosaic
RBD nanoparticles protect against challenge by diverse sarbecoviruses in
animal models ; Science; Vol. 377; No. 6606; Art. No. eabq0839; PMCID
PMC9273039; 10.1126/science.abq0839
Kim, Bong Heon; Kim, Min Kyung; et el. (2022) Crystal
structure of the Ate1 arginyl-tRNA-protein transferase and arginylation
of N-degron substrates ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 119; No. 31; Art.
No. e2209597119; PMCID PMC9351520; 10.1073/pnas.2209597119
Meister, Markus (2022) Learning,
fast and slow ; Current Opinion in Neurobiology; Vol. 75; Art.
No. 102555; 10.1016/j.conb.2022.102555
Andrews, Brenda; Chang, Jae-Byum; et el. (2022) Imaging
cell biology ; Nature Cell Biology; Vol. 24; No. 8; 1180-1185; 10.1038/s41556-022-00960-6
Boninsegna, Lorenzo; Yildirim, Asli; et el. (2022) Integrative
genome modeling platform reveals essentiality of rare contact events in
3D genome organizations ; Nature Methods; Vol. 19; No. 8; 938-949; 10.1038/s41592-022-01527-x
Schwartzman, Julia A.; Ebrahimi, Ali; et el. (2022) Bacterial
growth in multicellular aggregates leads to the emergence of complex
life cycles ; Current Biology; Vol. 32; No. 14; 3059-3069.e7; PMCID
PMC9496226; 10.1016/j.cub.2022.06.011
Macabenta, Frank; Sun, Hsuan-Te; et el. (2022) BMP-gated
cell-cycle progression drives anoikis during mesenchymal collective
migration ; Developmental Cell; Vol. 57; No. 14; 1683-1693; PMCID
PMC9339487; 10.1016/j.devcel.2022.05.017
Wang, Zitong Jerry and Thomson, Matt (2022) Localization
of signaling receptors maximizes cellular information acquisition in
spatially structured natural environments ; Cell Systems; Vol. 13;
No. 7; 530-546; 10.1016/j.cels.2022.05.004
Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2022) Engineered
AAVs for non-invasive gene delivery to rodent and non-human primate
nervous systems ; Neuron; Vol. 110; No. 14; 2242-2257; PMCID
PMC9308721; 10.1016/j.neuron.2022.05.003
Lapteva, Anna P.; Sarraf, Namita; et el. (2022) DNA
Strand-Displacement Temporal Logic Circuits ; Journal of the American
Chemical Society; Vol. 144; No. 27; 12443-12449; PMCID PMC9284558; 10.1021/jacs.2c04325
Kajikawa, Koichiro; Hulse, Brad K.; et el. (2022) UP-DOWN
states and ripples differentially modulate membrane potential dynamics
across DG, CA3, and CA1 in awake mice ; eLife; Vol. 11; Art.No.
69596; PMCID PMC9275824; 10.7554/elife.69596
Tribby, Ariana L.; Bois, Justin S.; et el. (2022) Hydrocarbon
Tracers Suggest Methane Emissions from Fossil Sources Occur
Predominately Before Gas Processing and That Petroleum Plays Are a
Significant Source ; Environmental Science and Technology; Vol. 56;
No. 13; 9623-9631; PMCID PMC9260955; 10.1021/acs.est.2c00927
Wang, F.; Li, S.; et el. (2022) P97/VCP
ATPase inhibitors can rescue p97 mutation-linked motor neuron
degeneration ; Brain Communications; Vol. 4; No. 4; Art. No. fcac176;
PMCID PMC9294923; 10.1093/braincomms/fcac176
Dam, Kim-Marie A.; Mutia, Patricia S.; et el. (2022) Comparing
methods for immobilizing HIV-1 SOSIPs in ELISAs that evaluate antibody
binding ; Scientific Reports; Vol. 12; Art. No. 11172; PMCID
PMC9247892; 10.1038/s41598-022-15506-x
Speth, Daan R.; Yu, Feiqiao B.; et el. (2022) Microbial
communities of Auka hydrothermal sediments shed light on vent
biogeography and the evolutionary history of thermophily ; ISME
Journal; Vol. 16; 1750-1764; 10.1038/s41396-022-01222-x
Challis, Rosemary C.; Ravindra Kumar, Sripriya; et el. (2022) Adeno-Associated
Virus Toolkit to Target Diverse Brain Cells ; Annual Review of
Neuroscience; Vol. 45; 447-469; 10.1146/annurev-neuro-111020-100834
Heryakusuma, Christian; Susanti, Dwi; et el. (2022) A
Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic
Archaeon ; Journal of Bacteriology; Vol. 204; No. 7; Art.
No. e00078-22; PMCID PMC9295563; 10.1128/jb.00078-22
Jhaveri, Nikita; van den Berg, Wouter; et el. (2022) Genome
annotation of Caenorhabditis briggsae by TEC-RED identifies new exons,
paralogs, and conserved and novel operons ; G3: Genes, Genomes,
Genetics; Vol. 12; No. 7; Art. No. jkac101; PMCID PMC9258526; 10.1093/g3journal/jkac101
Tookmanian, Elise; Junghans, Lisa; et el. (2022) Hopanoids
Confer Robustness to Physicochemical Variability in the Niche of the
Plant Symbiont Bradyrhizobium diazoefficiens ; Journal of
Bacteriology; Vol. 204; No. 7; jb.00442-21; PMCID PMC9295548; 10.1128/jb.00442-21
Koontz, Alison; Urrutia, Hugo A.; et el. (2022) Retroviral
lineage analysis reveals dual contribution from ectodermal placodes and
neural crest cells to avian olfactory sensory and GnRH neurons ;
Natural Sciences; Vol. 2; No. 3; Art. No. e20210037; PMCID PMC9605686;
10.1002/ntls.20210037
Ding, Fangyuan; Su, Christina J.; et el. (2022) Dynamics
and functional roles of splicing factor autoregulation ; Cell
Reports; Vol. 39; No. 12; Art. No. 110985; PMCID PMC9262138; 10.1016/j.celrep.2022.110985
Byrge, Lisa; Kliemann, Dorit; et el. (2022) Video-evoked
fMRI BOLD responses are highly consistent across different data
acquisition sites ; Human Brain Mapping; Vol. 43; No. 9; 2972-2991;
PMCID PMC9120552; 10.1002/hbm.25830
Yu, Hang; Speth, Daan R.; et el. (2022) Community
Structure and Microbial Associations in Sediment-Free Methanotrophic
Enrichment Cultures from a Marine Methane Seep ; Applied and
Environmental Microbiology; Vol. 88; No. 11; Art. No. e0210921; PMCID
PMC9195934; 10.1128/aem.02109-21
Bley, Christopher J.; Nie, Si; et el. (2022) Architecture
of the cytoplasmic face of the nuclear pore ; Science; Vol. 376;
No. 6598; Art. No. abm9129; PMCID PMC9348906; 10.1126/science.abm9129
Bozhanova, Nina G.; Flyak, Andrew I.; et el. (2022) Computational
identification of HCV neutralizing antibodies with a common HCDR3
disulfide bond motif in the antibody repertoires of infected
individuals ; Nature Communications; Vol. 13; Art. No. 3178; PMCID
PMC9177688; 10.1038/s41467-022-30865-9
Glynn, Allison T.; Davidson, Samuel R.; et el. (2022) Developmental
Self-Assembly of a DNA Ring with Stimulus-Responsive Size and Growth
Direction ; Journal of the American Chemical Society; Vol. 144;
No. 22; 10075-10079; PMCID PMC9185747; 10.1021/jacs.2c03853
Nicolas, William J.; Fäßler, Florian; et el. (2022) Cryo-electron
tomography of the onion cell wall shows bimodally oriented cellulose
fibers and reticulated homogalacturonan networks ; Current Biology;
Vol. 32; No. 11; 2375-2389; PMCID PMC9240970; 10.1016/j.cub.2022.04.024
Wang, Feng; Li, Shan; et el. (2022) Sulforaphane
is Synergistic with CB‐5083 and Inhibits Colony Formation of
CB‐5083‐Resistant HCT116 Cells ; ChemMedChem; Vol. 17; No. 11; Art.
No. e202200030; 10.1002/cmdc.202200030
Tan, Chieh-Hsiang; Park, Heenam; et el. (2022) Loss
of famh-136/ FAM136A results in minor locomotion and behavioral changes
in Caenorhabditis elegans ; microPublication Biology; Vol. 2022; Art.
No. 000553; PMCID PMC9163966; 10.17912/micropub.biology.000553
Wandelt, Sarah K.; Kellis, Spencer; et el. (2022) Decoding
grasp and speech signals from the cortical grasp circuit in a
tetraplegic human ; Neuron; Vol. 110; No. 11; 1777-1787; PMCID
PMC9186423; 10.1016/j.neuron.2022.03.009
Peck, Ariana; Carter, Stephen D.; et el. (2022) Montage
electron tomography of vitrified specimens ; Journal of Structural
Biology; Vol. 214; No. 2; 107860; PMCID PMC10081539; 10.1016/j.jsb.2022.107860
Livingston, Jadzia; Spero, Melanie A.; et el. (2022) Visualization
of mRNA Expression in Pseudomonas aeruginosa Aggregates Reveals Spatial
Patterns of Fermentative and Denitrifying Metabolism ; Applied and
Environmental Microbiology; Vol. 88; No. 11; Art. No. aem.00439-22; 10.1128/aem.00439-22
Meirelles, Lucas A. and Newman, Dianne K. (2022) Phenazines
and toxoflavin act as interspecies modulators of resilience to diverse
antibiotics ; Molecular Microbiology; Vol. 117; No. 6; 1384-1404;
PMCID PMC10249331; 10.1111/mmi.14915
Bostick, John W.; Schonhoff, Aubrey M.; et el. (2022) Gut
microbiome-mediated regulation of neuroinflammation ; Current Opinion
in Immunology; Vol. 76; Art. No. 102177; PMCID PMC9167715; 10.1016/j.coi.2022.102177
Andersen, Richard A. and Aflalo, Tyson (2022) Preserved
cortical somatotopic and motor representations in tetraplegic
humans ; Current Opinion in Neurobiology; Vol. 74; Art. No. 102547;
PMCID PMC9167753; 10.1016/j.conb.2022.102547
Naragon, Thomas H.; Wagner, Julian M.; et el. (2022) Parallel
evolutionary paths of rove beetle myrmecophiles: replaying a deep-time
tape of life ; Current Opinion in Insect Science; Vol. 51; Art.
No. 100903; 10.1016/j.cois.2022.100903
Case, Nicola T.; Song, Min; et el. (2022) Exploring
Space via Astromycology: A Report on the CIFAR Programs Earth 4D and
Fungal Kingdom Inaugural Joint Meeting ; Astrobiology; Vol. 22;
No. 6; 637-640; PMCID PMC9233531; 10.1089/ast.2021.0186
Tjahjono, Nikki; Jin, Yihan; et el. (2022) Letting
the little light of mind shine: Advances and future directions in
neurochemical detection ; Neuroscience Research; Vol. 179; 65-78;
PMCID PMC9508992; 10.1016/j.neures.2021.11.012
Chen, Xiaoqiao; Chen, Sisi; et el. (2022) Minimal
gene set discovery in single-cell mRNA-seq datasets with ActiveSVM ;
Nature Computational Science; Vol. 2; No. 6; 387-398; 10.1038/s43588-022-00263-8
Cryan, John F. and Mazmanian, Sarkis K. (2022) Microbiota–brain
axis: Context and causality ; Science; Vol. 376; No. 6596; 938-939;
10.1126/science.abo4442
Lingappa, Usha F.; Stein, Nathaniel T.; et el. (2022) Early
impacts of climate change on a coastal marine microbial mat
ecosystem ; Science Advances; Vol. 8; No. 21; Art. No. eabm7826;
PMCID PMC9140962; 10.1126/sciadv.abm7826
Papdogiannis, Vasileios; Pennati, Alessandro; et el. (2022) Hmx
gene conservation identifies the origin of vertebrate cranial
ganglia ; Nature; Vol. 605; No. 7911; 701-705; PMCID PMC10214386; 10.1038/s41586-022-04742-w
Porter, Nicholas J.; Danelius, Emma; et el. (2022) Biocatalytic
Carbene Transfer Using Diazirines ; Journal of the American Chemical
Society; Vol. 144; No. 20; 8892-8896; PMCID PMC9205183; 10.1021/jacs.2c02723
Chai, Cynthia M.; Torkashvand, Mahdi; et el. (2022) Interneuron
control of C. elegans developmental decision-making ; Current
Biology; Vol. 32; No. 10; 2316-2324; PMCID PMC9270850; 10.1016/j.cub.2022.03.077
Zhou, Wen; Gao, Fan; et el. (2022) Single-cell
deletion analyses show control of pro–T cell developmental speed and
pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b ; Science
Immunology; Vol. 7; No. 71; eabm1920; PMCID PMC9273332; 10.1126/sciimmunol.abm1920
Molina, Rosana S.; Rix, Gordon; et el. (2022) In
vivo hypermutation and continuous evolution ; Nature Reviews Methods
Primers; Vol. 2; Art. No. 36; 10.1038/s43586-022-00119-5
Muthusamy, Anand K.; Kim, Charlene H.; et el. (2022) Three
Mutations Convert the Selectivity of a Protein Sensor from Nicotinic
Agonists to S-Methadone for Use in Cells, Organelles, and Biofluids ;
Journal of the American Chemical Society; Vol. 144; No. 19; 8480-8486;
PMCID PMC9121368; 10.1021/jacs.2c02323
Su, Christina J.; Murugan, Arvind; et el. (2022) Ligand-receptor
promiscuity enables cellular addressing ; Cell Systems; Vol. 13;
No. 5; 408-425; PMCID PMC10897978; 10.1016/j.cels.2022.03.001
Klumpe, Heidi E.; Langley, Matthew A.; et el. (2022) The
context-dependent, combinatorial logic of BMP signaling ; Cell
Systems; Vol. 13; No. 5; 388-407; PMCID PMC9127470; 10.1016/j.cels.2022.03.002
Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Novel
transient cytoplasmic rings stabilize assembling bacterial flagellar
motors ; EMBO Journal; Vol. 41; No. 10; Art. No. e109523; PMCID
PMC9108667; 10.15252/embj.2021109523
Zhang, Gang; Wang, Feng; et el. (2022) Discovery
of small-molecule inhibitors of RUVBL1/2 ATPase ; Bioorganic and
Medicinal Chemistry; Vol. 62; Art. No. 116726; PMCID PMC9034851; 10.1016/j.bmc.2022.116726
Davison, Helen R.; Pilgrim, Jack; et el. (2022) Genomic
diversity across the Rickettsia and ‘Candidatus Megaira’ genera and
proposal of genus status for the Torix group ; Nature Communications;
Vol. 13; Art. No. 2630; PMCID PMC9098888; 10.1038/s41467-022-30385-6
Shinya, Ryoji; Sun, Simo; et el. (2022) Possible
stochastic sex determination in Bursaphelenchus nematodes ; Nature
Communications; Vol. 13; Art. No. 2574; 10.1038/s41467-022-30173-2
Aflalo, Tyson; Zhang, Carey; et el. (2022) Implicit
mechanisms of intention ; Current Biology; Vol. 32; No. 9; 2051-2060;
PMCID PMC9090994; 10.1016/j.cub.2022.03.047
Fu, Zhongzheng; Beam, Danielle; et el. (2022) The
geometry of domain-general performance monitoring in the human medial
frontal cortex ; Science; Vol. 376; No. 6593; Art. No. abm9922; 10.1126/science.abm9922
Mondragón-Palomino, Octavio; Poceviciute, Roberta; et el. (2022) Three-dimensional
imaging for the quantification of spatial patterns in microbiota of the
intestinal mucosa ; Proceedings of the National Academy of Sciences;
Vol. 119; No. 18; Art. No. e2118483119; PMCID PMC9171773; 10.1073/pnas.2118483119
Jacobs, Jana L.; Bain, William; et el. (2022) Severe
Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With
Coronavirus Disease 2019 Severity and Predicts Clinical Outcome ;
Clinical Infectious Diseases; Vol. 74; No. 9; 1525-1533; PMCID
PMC9070832; 10.1093/cid/ciab686
Zhang, Mark G. and Sternberg, Paul W. (2022) Both
entry to and exit from diapause arrest in Caenorhabditis elegans are
regulated by a steroid hormone pathway ; Development; Vol. 149;
No. 9; Art. No. dev200173; PMCID PMC9148571; 10.1242/dev.200173
Cable, Jennifer; Rappuoli, Rino; et el. (2022) Innovative
vaccine approaches—a Keystone Symposia report ; Annals of the New
York Academy of Sciences; Vol. 1511; No. 1; 59-86; 10.1111/nyas.14739
Quinodoz, Sofia A. and Guttman, Mitchell (2022) Essential
Roles for RNA in Shaping Nuclear Organization ; Cold Spring Harbor
Perspectives in Biology; Vol. 14; No. 5; a039719; PMCID PMC9159268; 10.1101/cshperspect.a039719
Casazza, Joseph P.; Cale, Evan M.; et el. (2022) Safety
and tolerability of AAV8 delivery of a broadly neutralizing antibody in
adults living with HIV: a phase 1, dose-escalation trial ; Nature
Medicine; Vol. 28; No. 5; 1022-1030; 10.1038/s41591-022-01762-x
Moses, Lambda and Pachter, Lior (2022) Museum
of spatial transcriptomics ; Nature Methods; Vol. 19; No. 5; 534-546;
10.1038/s41592-022-01409-2
Poole, William; Pandey, Ayush; et el. (2022) BioCRNpyler:
Compiling chemical reaction networks from biomolecular parts in diverse
contexts ; PLoS Computational Biology; Vol. 18; No. 4; Art.
No. e1009987; PMCID PMC9060376; 10.1371/journal.pcbi.1009987
Tran, Steven and Prober, David A. (2022) Validation
of Candidate Sleep Disorder Risk Genes Using Zebrafish ; Frontiers in
Molecular Neuroscience; Vol. 15; Art. No. 873520; PMCID PMC9021570; 10.3389/fnmol.2022.873520
Xu, Shuwa; Sergeeva, Alina P.; et el. (2022) Affinity
requirements for control of synaptic targeting and neuronal cell
survival by heterophilic IgSF cell adhesion molecules ; Cell Reports;
Vol. 39; No. 1; Art. No. 110618; PMCID PMC9078203; 10.1016/j.celrep.2022.110618
Li, Shan; Wang, Feng; et el. (2022) NMS-873
Leads to Dysfunctional Glycometabolism in A p97-Independent Manner in
HCT116 Colon Cancer Cells ; Pharmaceutics; Vol. 14; No. 4; 764; PMCID
PMC9024726; 10.3390/pharmaceutics14040764
Greenwald, Noah F.; Miller, Geneva; et el. (2022) Whole-cell
segmentation of tissue images with human-level performance using
large-scale data annotation and deep learning ; Nature Biotechnology;
Vol. 40; No. 4; 555-565; PMCID PMC9010346; 10.1038/s41587-021-01094-0
Fan, Jiang-peng; Geng, Hui-zhen; et el. (2022) Age-dependent
alterations in key components of the nigrostriatal dopaminergic system
and distinct motor phenotypes ; Acta Pharmacologica Sinica; Vol. 43;
No. 4; 862-875; PMCID PMC8975991; 10.1038/s41401-021-00713-5
Agapite, Julie; Albou, Laurent-Philippe; et el. (2022) Harmonizing
model organism data in the Alliance of Genome Resources ; Genetics;
Vol. 220; No. 4; Art. No. iyac022; PMCID PMC8982023; 10.1093/genetics/iyac022
Kanwal, Jessleen K. and Parker, Joseph (2022) The
neural basis of interspecies interactions in insects ; Current
Opinion in Insect Science; Vol. 50; Art. No. 100891; 10.1016/j.cois.2022.100891
Davis, Paul; Zarowiecki, Magdalena; et el. (2022) WormBase
in 2022—data, processes, and tools for analyzing Caenorhabditis
elegans ; Genetics; Vol. 220; No. 4; Art. No. iyac003; PMCID
PMC8982018; 10.1093/genetics/iyac003
Bali, Namrata; Lee, Hyung-Kook (Peter); et el. (2022) Sticks
and Stones, a conserved cell surface ligand for the Type IIa RPTP Lar,
regulates neural circuit wiring in Drosophila ; eLife; Vol. 11; Art.
No. e71469; PMCID PMC9000958; 10.7554/eLife.71469
Kliemann, Dorit; Adolphs, Ralph; et el. (2022) Caltech
Conte Center, a multimodal data resource for exploring social cognition
and decision-making ; Scientific Data; Vol. 9; Art. No. 138; PMCID
PMC8971509; 10.1038/s41597-022-01171-2
da Veiga Beltrame, Eduardo; Arnaboldi, Valerio; et el. (2022) WormBase
single-cell tools ; Bioinformatics Advances; Vol. 2; No. 1; vbac018;
PMCID PMC9258504; 10.1093/bioadv/vbac018
Yang, Huan; Sibilla, Caroline; et el. (2022) Clueless/CLUH
regulates mitochondrial fission by promoting recruitment of Drp1 to
mitochondria ; Nature Communications; Vol. 13; No. 1; Art. No. 1582;
10.1038/s41467-022-29071-4
Miller, David C.; Lal, Ravi G.; et el. (2022) Biocatalytic
One-Carbon Ring Expansion of Aziridines to Azetidines via a Highly
Enantioselective [1,2]-Stevens Rearrangement ; Journal of the
American Chemical Society; Vol. 144; No. 11; 4739-4745; PMCID
PMC9022672; 10.1021/jacs.2c00251
Wareham, Lauren K.; Liddelow, Shane A.; et el. (2022) Solving
neurodegeneration: common mechanisms and strategies for new
treatments ; Molecular Neurodegeneration; Vol. 17; Art. No. 23; PMCID
PMC8935795; 10.1186/s13024-022-00524-0
Wittmann, Bruce J.; Johnston, Kadina E.; et el. (2022) evSeq:
Cost-Effective Amplicon Sequencing of Every Variant in a Protein
Library ; ACS Synthetic Biology; Vol. 11; No. 3; 1313-1324; 10.1021/acssynbio.1c00592
Wang, Feng; Li, Shan; et el. (2022) Temporal
proteomics reveal specific cell cycle oncoprotein downregulation by
p97/VCP inhibition ; Cell Chemical Biology; Vol. 29; No. 3; 517-529;
PMCID PMC8934257; 10.1016/j.chembiol.2021.11.005
Ma, Yitong; Budde, Mark W.; et el. (2022) Synthetic
mammalian signaling circuits for robust cell population control ;
Cell; Vol. 185; No. 6; 967-979; PMCID PMC8995209; 10.1016/j.cell.2022.01.026
Wang, Tongtong; Pool, Allan-Hermann; et el. (2022) Serotonergic
fast lane from taste detection to preparatory digestive actions ;
Neuron; Vol. 110; No. 6; 907-909; 10.1016/j.neuron.2022.02.023
Gorin, Gennady and Pachter, Lior (2022) Modeling
bursty transcription and splicing with the chemical master equation ;
Biophysical Journal; Vol. 121; No. 6; 1056-1069; 10.1016/j.bpj.2022.02.004
Namiki, Shigehiro; Ros, Ivo G.; et el. (2022) A
population of descending neurons that regulates the flight motor of
Drosophila ; Current Biology; Vol. 32; No. 5; 1189-1196; PMCID
PMC9206711; 10.1016/j.cub.2022.01.008
Flamholz, Avi I. and Newman, Dianne K. (2022) Microbial
communities: The metabolic rate is the trait ; Current Biology; Vol.
32; No. 5; R215-R218; 10.1016/j.cub.2022.02.002
Schonhoff, Aubrey M. and Mazmanian, Sarkis K. (2022) Lung
microbes mediate spinal-cord autoimmunity ; Nature; Vol. 603;
No. 7899; 38-40; 10.1038/d41586-022-00468-x
Liu, Mengyu; Kim, Dong-Wook; et el. (2022) Make
war not love: The neural substrate underlying a state-dependent switch
in female social behavior ; Neuron; Vol. 110; No. 5; 841-856; PMCID
PMC8897222; 10.1016/j.neuron.2021.12.002
Cui, Lian; Guo, Jeff; et el. (2022) Glutamate
in primary afferents is required for itch transmission ; Neuron; Vol.
110; No. 5; 809-823; PMCID PMC8898340; 10.1016/j.neuron.2021.12.007
Sacher, Wesley D.; Chen, Fu-Der; et el. (2022) Optical
phased array neural probes for beam-steering in brain tissue ; Optics
Letters; Vol. 47; No. 5; 1073-1076; 10.1364/OL.441609
Shinoda, Kenta; Choe, Andrea; et el. (2022) Nematode
ascarosides attenuate mammalian type 2 inflammatory responses ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 119; No. 9; Art. No. e2108686119; PMCID PMC8892368; 10.1073/pnas.2108686119
Cohen, Sarah M.; Wrobel, Chester J. J.; et el. (2022) Formation
and function of dauer ascarosides in the nematodes Caenorhabditis
briggsae and Caenorhabditis elegans ; G3; Vol. 12; No. 3; Art.
No. jkac014; PMCID PMC8895998; 10.1093/g3journal/jkac014
Jachowicz, Joanna W.; Strehle, Mackenzie; et el. (2022) Xist
spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide
silencing and specificity to the X chromosome ; Nature Structural and
Molecular Biology; Vol. 29; No. 3; 239-249; PMCID PMC8969943; 10.1038/s41594-022-00739-1
Kim, Jongmin; Quijano, Juan F.; et el. (2022) Synthetic
logic circuits using RNA aptamer against T7 RNA polymerase ;
Biotechnology Journal; Vol. 17; No. 3; Art. No. 2000449; 10.1002/biot.202000449
Stewart Campbell, A.; Needham, Brittany D.; et el. (2022) Safety
and target engagement of an oral small-molecule sequestrant in
adolescents with autism spectrum disorder: an open-label phase 1b/2a
trial ; Nature Medicine; Vol. 28; No. 3; 528-534; 10.1038/s41591-022-01683-9
Perry, Elena K. and Newman, Dianne K. (2022) Prevalence
and Correlates of Phenazine Resistance in Culturable Bacteria from a
Dryland Wheat Field ; Applied and Environmental Microbiology; Vol.
88; No. 6; Art. No. e02320-21; PMCID PMC8939311; 10.1128/aem.02320-21
Bostick, John W. and Mazmanian, Sarkis K. (2022) Impaired
gut barrier affects microglia health ; Nature Neuroscience; Vol. 25;
No. 3; 268-270; 10.1038/s41593-022-01028-2
Perry, Elena K.; Meirelles, Lucas A.; et el. (2022) From
the soil to the clinic: the impact of microbial secondary metabolites on
antibiotic tolerance and resistance ; Nature Reviews Microbiology;
Vol. 20; No. 3; 129-142; PMCID PMC8857043; 10.1038/s41579-021-00620-w
Garg, Pranjal; Tan, Chieh-Hsiang; et el. (2022) DiI
staining of sensory neurons in the entomopathogenic nematode Steinernema
hermaphroditum ; microPublication Biology; PMCID PMC8874337; 10.17912/micropub.biology.000516
Needham, Brittany D.; Funabashi, Masanori; et el. (2022) A
gut-derived metabolite alters brain activity and anxiety behaviour in
mice ; Nature; Vol. 602; No. 7899; 647-653; PMCID PMC9170029; 10.1038/s41586-022-04396-8
Ichiki, Takako; Wang, Tongtong; et el. (2022) Sensory
representation and detection mechanisms of gut osmolality change ;
Nature; Vol. 602; No. 7897; 468-474; 10.1038/s41586-021-04359-5
Vlahos, Alexander E.; Kang, Jeewoo; et el. (2022) Protease-controlled
secretion and display of intercellular signals ; Nature
Communications; Vol. 13; Art. No. 912; PMCID PMC8854555; 10.1038/s41467-022-28623-y
Shen, Cheng; Lamba, Adiyant; et el. (2022) Stain-free
detection of embryo polarization using deep learning ; Scientific
Reports; Vol. 12; Art. No. 2404; 10.1038/s41598-022-05990-6
Guttman, Mitchell (2022) How
non-coding RNAs shape nuclear structure to regulate gene expression ;
Biophysical Journal; Vol. 121; No. 3; 167a; 10.1016/j.bpj.2021.11.1898
Salmon, Gabe and Phillips, Rob (2022) Reproducibility,
stochasticity, and geometry in a lattice of cross-feeding microbial
cells ; Biophysical Journal; Vol. 121; No. 3; 120a; 10.1016/j.bpj.2021.11.2086
Larios, David A.; Phillips, Rob; et el. (2022) Reconstituting
the nonequilibrium biophysics of the LECA cytoskeleton in active
matter ; Biophysical Journal; Vol. 121; No. 3; 521a; 10.1016/j.bpj.2021.11.2744
Arnold, Frances H. (2022) Innovation
by evolution: bringing new chemistry to life ; Biophysical Journal;
Vol. 121; No. 3; 177a; 10.1016/j.bpj.2021.11.1846
Nandi, Purbasha; Li, Shan; et el. (2022) Mechanism
of the alteration in domain-domain communications in human p97/VCP
atpase ; Biophysical Journal; Vol. 121; No. 3; 298a; 10.1016/j.bpj.2021.11.1259
Suresh, Pooja; Galstyan, Vahe; et el. (2022) Connections
distributed within 3 μm of chromosomes are necessary and sufficient for
the kinetochore-fiber’s robust anchorage in the mammalian spindle ;
Biophysical Journal; Vol. 121; No. 3; 448a-449a; 10.1016/j.bpj.2021.11.536
Duarte, Ana I.; Jin Lee, Heun; et el. (2022) Measuring
energy consumption through space and time in an active matter system of
cytoskeletal motors and filaments ; Biophysical Journal; Vol. 121;
No. 3; 521a-522a; 10.1016/j.bpj.2021.11.2745
Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Bacterial
microcompartment organization by cryo electron tomography and
high-resolution subtomogram averaging ; Biophysical Journal; Vol.
121; No. 3; 168a; 10.1016/j.bpj.2021.11.1892
Hueschen, Christina; Segev Zarko, Li-av; et el. (2022) Distinct
self-organized actin patterns explain diverse parasite gliding
modes ; Biophysical Journal; Vol. 121; No. 3; 314a; 10.1016/j.bpj.2021.11.1183
Stundl, Jan; Soukup, Vladimir; et el. (2022) Efficient
CRISPR Mutagenesis in Sturgeon Demonstrates Its Utility in Large,
Slow-Maturing Vertebrates ; Frontiers in Cell and Developmental
Biology; Vol. 10; Art. No. 750833; PMCID PMC8867083; 10.3389/fcell.2022.750833
Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Neutralizing
antibodies induced in immunized macaques recognize the CD4-binding site
on an occluded-open HIV-1 envelope trimer ; Nature Communications;
Vol. 13; Art. No. 732; PMCID PMC8826976; 10.1038/s41467-022-28424-3
Weber, Timm; Potthoff, Julian; et el. (2022) Analysis
of antibodies from HCV elite neutralizers identifies genetic
determinants of broad neutralization ; Immunity; Vol. 55; No. 2;
341-354; PMCID PMC10089621; 10.1016/j.immuni.2021.12.003
Tanaka, Shiho; Olson, C. Anders; et el. (2022) Rapid
identification of neutralizing antibodies against SARS-CoV-2 variants by
mRNA display ; Cell Reports; Vol. 38; No. 6; Art. No. 110348; PMCID
PMC8769934; 10.1016/j.celrep.2022.110348
Wang, Feng; Li, Shan; et el. (2022) The
p97 Inhibitor UPCDC-30245 Blocks Endo-Lysosomal Degradation ;
Pharmaceuticals; Vol. 15; No. 2; Art. No. 204; PMCID PMC8880557; 10.3390/ph15020204
Lee, Daniel A.; Oikonomou, Grigorios; et el. (2022) Large-scale
Analysis of Sleep in Zebrafish ; Bio-protocol; Vol. 12; No. 3; Art.
No. e4313; 10.21769/bioprotoc.4313
Dunipace, Leslie; Newcomb, Susan; et el. (2022) Brinker
levels regulated by a promoter proximal element support germ cell
homeostasis ; Development; Vol. 149; No. 3; Art. No. dev199890; PMCID
PMC8918798; 10.1242/dev.199890
Tadmor, Arbel D. and Phillips, Rob (2022) MCRL:
using a reference library to compress a metagenome into a non-redundant
list of sequences, considering viruses as a case study ;
Bioinformatics; Vol. 38; No. 3; 631-647; PMCID PMC10060711; 10.1093/bioinformatics/btab703
Duethorn, Binyamin; Groll, Fabian; et el. (2022) Lima1
mediates the pluripotency control of membrane dynamics and cellular
metabolism ; Nature Communications; Vol. 13; Art. No. 610; PMCID
PMC8807836; 10.1038/s41467-022-28139-5
Himmler, Tobias; Crémière, Antoine; et el. (2022) Putative
fossils of chemotrophic microbes preserved in seep carbonates from
Vestnesa Ridge, off northwest Svalbard, Norway ; Geology; Vol. 50;
No. 2; 169-173; 10.1130/g49620.1
Gayoso, Adam; Lopez, Romain; et el. (2022) A
Python library for probabilistic analysis of single-cell omics data ;
Nature Biotechnology; Vol. 40; No. 2; 163-166; 10.1038/s41587-021-01206-w
Duan, Yangyang; Ye, Tao; et el. (2022) Brain-wide
Cas9-mediated cleavage of a gene causing familial Alzheimer’s disease
alleviates amyloid-related pathologies in mice ; Nature Biomedical
Engineering; Vol. 6; No. 2; 168-180; 10.1038/s41551-021-00759-0
Savela, Emily S.; Winnett, Alexander Viloria; et el. (2022) Quantitative
SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs
Inform Appropriate Respiratory Sampling Site and Analytical Test
Sensitivity Required for Earliest Viral Detection ; Journal of
Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID
PMC8849374; 10.1128/JCM.01785-21
Stiles, Noelle R. B.; Tanguay, Armand R., Jr.; et el. (2022) Crossmodal
Postdiction: Conscious Perception as Revisionist History ; Journal of
Perceptual Imaging; Vol. 5; Art. No. jpi0150; PMCID PMC9028020; 10.2352/j.percept.imaging.2022.5.000403
Wu, Fabai; Speth, Daan R.; et el. (2022) Unique
mobile elements and scalable gene flow at the prokaryote–eukaryote
boundary revealed by circularized Asgard archaea genomes ; Nature
Microbiology; Vol. 7; No. 2; 200-212; 10.1038/s41564-021-01039-y
El-Nachef, Wael N.; Hu, Claire; et el. (2022) Whole
gut imaging allows quantification of all enteric neurons in the adult
zebrafish intestine ; Neurogastroenterology and Motility; Vol. 34;
No. 2; Art. No. e14292; PMCID PMC8799505; 10.1111/nmo.14292
McCaffrey, Erin F.; Donato, Michele; et el. (2022) The
immunoregulatory landscape of human tuberculosis granulomas ; Nature
Immunology; Vol. 23; No. 2; 318-329; PMCID PMC8810384; 10.1038/s41590-021-01121-x
Williams, Ruth M.; Lukoseviciute, Martyna; et el. (2022) Single-cell
atlas of early chick development reveals gradual segregation of neural
crest lineage from the neural plate border during neurulation ;
eLife; Vol. 11; Art. No. e74464; PMCID PMC8798042; 10.7554/eLife.74464
Dahlstrom, Kurt M. and Newman, Dianne K. (2022) Soil
bacteria protect fungi from phenazines by acting as toxin sponges ;
Current Biology; Vol. 32; No. 2; 275-288; 10.1016/j.cub.2021.11.002
Pandey, Ayush and Murray, Richard M. (2022) Robustness
guarantees for structured model reduction of dynamical systems with
applications to biomolecular models ; International Journal of Robust
and Nonlinear Control; 10.1002/rnc.6013
Schildknecht, Dominik; Popova, Anastasia N.; et el. (2022) Reinforcement
learning reveals fundamental limits on the mixing of active
particles ; Soft Matter; Vol. 18; No. 3; 617-625; 10.1039/d1sm01400e
Zhu, Ronghui; del Rio-Salgado, Jesus M.; et el. (2022) Synthetic
multistability in mammalian cells ; Science; Vol. 375; No. 6578; Art.
No. eabg9765; 10.1126/science.abg9765
McCord, Rachel Patton; Taipale, Mikko; et el. (2022) Voices
on technology: The molecular biologists’ ever-expanding toy box ;
Molecular Cell; Vol. 82; No. 2; 221-226; 10.1016/j.molcel.2021.12.025
Feinsinger, Ashley; Pouratian, Nader; et el. (2022) Ethical
commitments, principles, and practices guiding intracranial
neuroscientific research in humans ; Neuron; Vol. 110; No. 2;
188-194; PMCID PMC9417025; 10.1016/j.neuron.2021.11.011
Liu, Zhen; Qin, Zi-Yang; et el. (2022) An
Enzymatic Platform for Primary Amination of 1-Aryl-2-alkyl Alkynes ;
Journal of the American Chemical Society; Vol. 144; No. 1; 80-85; PMCID
PMC8765727; 10.1021/jacs.1c11340
Vanshylla, Kanika; Fan, Chengcheng; et el. (2022) Discovery
of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite
neutralizers ; Cell Host and Microbe; Vol. 30; No. 1; 69-82; PMCID
PMC8683262; 10.1016/j.chom.2021.12.010
Depelteau, Jamie S.; Renault, Ludovic; et el. (2022) UVC
inactivation of pathogenic samples suitable for cryo-EM analysis ;
Communications Biology; Vol. 5; Art. No. 29; 10.1038/s42003-021-02962-w
Parker, Joe (2022) Joe
Parker [Q&A with Joe Parker] ; Current Biology; Vol. 32; No. 1;
R6-R8; 10.1016/j.cub.2021.11.057
Lu, Jenny; Behbahani, Amir H.; et el. (2022) Transforming
representations of movement from body- to world-centric space ;
Nature; Vol. 601; No. 7891; 98-104; 10.1038/s41586-021-04191-x
Ogega, Clinton O.; Skinner, Nicole E.; et el. (2022) B
cell overexpression of FCRL5 and PD-1 is associated with low antibody
titers in HCV infection ; PLOS Pathogens; Vol. 18; No. 1; Art.
No. e1010179; PMCID PMC8769295; 10.1371/journal.ppat.1010179
Chadwick, Grayson L.; Skennerton, Connor T.; et el. (2022) Comparative
genomics reveals electron transfer and syntrophic mechanisms
differentiating methanotrophic and methanogenic archaea ; PLoS
Biology; Vol. 20; No. 1; Art. No. e3001508; PMCID PMC9012536; 10.1371/journal.pbio.3001508
Nichols, Aaron L.; Blumenfeld, Zack; et el. (2022) Fluorescence
activation mechanism and imaging of drug permeation with new sensors for
smoking-cessation ligands ; eLife; Vol. 11; Art. No. e74648; PMCID
PMC8820738; 10.7554/eLife.74648
Stuckey, K.; Dua, R.; et el. (2022) Optimal
dynamic incentive scheduling for Hawk-Dove evolutionary games ;
Physical Review E; Vol. 105; No. 1; Art. No. 014412; 10.1103/PhysRevE.105.014412
Miller, David C.; Athavale, Soumitra V.; et el. (2022) Combining
chemistry and protein engineering for new-to-nature biocatalysis ;
Nature Synthesis; Vol. 1; No. 1; 18-23; PMCID PMC8995090; 10.1038/s44160-021-00008-x
Arrastia, Mary V.; Jachowicz, Joanna W.; et el. (2022) Single-cell
measurement of higher-order 3D genome organization with scSPRITE ;
Nature Biotechnology; Vol. 40; No. 1; 64-73; 10.1038/s41587-021-00998-1
Chai, Cynthia M.; Chen, Wen; et el. (2022) A
conserved behavioral role for a nematode interneuron neuropeptide
receptor ; Genetics; Vol. 220; No. 1; Art. No. iyab198; PMCID
PMC8733633; 10.1093/genetics/iyab198
Cao, Mengyi; Schwartz, Hillel T.; et el. (2022) The
entomopathogenic nematode Steinernema hermaphroditum is a
self-fertilizing hermaphrodite and a genetically tractable system for
the study of parasitic and mutualistic symbiosis ; Genetics; Vol.
220; No. 1; Art. No. iyab170; PMCID PMC8733455; 10.1093/genetics/iyab170
Lohoff, T.; Ghazanfar, S.; et el. (2022) Integration
of spatial and single-cell transcriptomic data elucidates mouse
organogenesis ; Nature Biotechnology; Vol. 40; No. 1; 74-85; 10.1038/s41587-021-01006-2
Yu, Hang; Skennerton, Connor T.; et el. (2022) Sulfate
differentially stimulates but is not respired by diverse anaerobic
methanotrophic archaea ; ISME Journal; Vol. 16; No. 1; 168-177; 10.1038/s41396-021-01047-0
Andersen, Richard A.; Aflalo, Tyson; et el. (2022) Exploring
Cognition with Brain–Machine Interfaces ; Annual Review of
Psychology; Vol. 73; 131-158; 10.1146/annurev-psych-030221-030214
Quinodoz, Sofia A.; Bhat, Prashant; et el. (2022) SPRITE:
a genome-wide method for mapping higher-order 3D interactions in the
nucleus using combinatorial split-and-pool barcoding ; Nature
Protocols; Vol. 17; No. 1; 36-75; 10.1038/s41596-021-00633-y
Goertsen, David; Flytzanis, Nicholas C.; et el. (2021) AAV
capsid variants with brain-wide transgene expression and decreased liver
targeting after intravenous delivery in mouse and marmoset ; Nature
Neuroscience; Vol. 25; No. 1; 106-115; 10.1038/s41593-021-00969-4
Brückner, Adrian; Badroos, Jean M.; et el. (2021) Evolutionary
assembly of cooperating cell types in an animal chemical defense
system ; Cell; Vol. 184; No. 25; 6138-6156; 10.1016/j.cell.2021.11.014
Markaki, Yolanda; Chong, Johnny Gan; et el. (2021) Xist
nucleates local protein gradients to propagate silencing across the X
chromosome ; Cell; Vol. 184; No. 25; 6174-6192; PMCID PMC8671326; 10.1016/j.cell.2021.10.022
Oberhofer, Georg; Ivy, Tobin; et el. (2021) Gene
drive that results in addiction to a temperature-sensitive version of an
essential gene triggers population collapse in Drosophila ;
Proceedings of the National Academy of Sciences; Vol. 118; No. 49; Art.
No. e2107413118; PMCID PMC8670509; 10.1073/pnas.2107413118
Abrams, Michael J.; Tan, Fayth Hui; et el. (2021) A
conserved strategy for inducing appendage regeneration in moon
jellyfish, Drosophila, and mice ; eLife; Vol. 10; e65092; PMCID
PMC8782573; 10.7554/eLife.65092
Sun, Haitao; Lu, Zhaoning; et el. (2021) Error-prone,
stress-induced 3′ flap–based Okazaki fragment maturation supports cell
survival ; Science; Vol. 374; No. 6572; 1252-1258; PMCID PMC8852821;
10.1126/science.abj1013
Arechavala, Rebecca Johnson; Rochart, Roger; et el. (2021) Task
switching reveals abnormal brain-heart electrophysiological signatures
in cognitively healthy individuals with abnormal CSF amyloid/tau, a
pilot study ; International Journal of Psychophysiology; Vol. 170;
102-111; PMCID PMC8865562; 10.1016/j.ijpsycho.2021.10.007
Cabeen, Ryan P.; Toga, Arthur W.; et el. (2021) Frontoinsular
cortical microstructure is linked to life satisfaction in young
adulthood ; Brain Imaging and Behavior; Vol. 15; No. 6; 2775-2789; 10.1007/s11682-021-00467-y
Keleş, Ümit; Lin, Chujun; et el. (2021) A
Cautionary Note on Predicting Social Judgments from Faces with Deep
Neural Networks ; Affective Science; Vol. 2; No. 4; 438-454; 10.1007/s42761-021-00075-5
Liu, Zhen; Calvó-Tusell, Carla; et el. (2021) Dual-function
enzyme catalysis for enantioselective carbon–nitrogen bond
formation ; Nature Chemistry; Vol. 13; No. 12; 1166-1172; 10.1038/s41557-021-00794-z
Cable, Jennifer; Elowitz, Michael B.; et el. (2021) Single
cell biology—a Keystone Symposia report ; Annals of the New York
Academy of Sciences; Vol. 1506; 74-97; 10.1111/nyas.14692
Barnes, Christopher; Scheid, Johannes F.; et el. (2021) Structural
insights into antibody-mediated neutralization of SARS-CoV-2 ;
Glycobiology; Vol. 31; No. 12; 1696-1697; 10.1093/glycob/cwab121
Wu, Daw-An; Adams, Sara W.; et el. (2021) Preliminary
analysis of qEEG during a subliminally‐primed task‐switching test in
pre‐symptomatic Alzheimer’s disease ; Alzheimer’s & Dementia;
Vol. 17; No. S5; Art. No. e057869; 10.1002/alz.057869
Solovieva, Tatiana and Bronner, Marianne (2021) Reprint
of: Schwann cell precursors: Where they come from and where they go ;
Cells & Development; Vol. 168; Art. No. 203729; 10.1016/j.cdev.2021.203729
Wu, Zachary; Johnston, Kadina E.; et el. (2021) Protein
sequence design with deep generative models ; Current Opinion in
Chemical Biology; Vol. 65; 18-27; 10.1016/j.cbpa.2021.04.004
Segalin, Cristina; Williams, Jalani; et el. (2021) The
Mouse Action Recognition System (MARS) software pipeline for automated
analysis of social behaviors in mice ; eLife; Vol. 10; Art.
No. e63720; PMCID PMC8631946; 10.7554/eLife.63720
Chari, Tara; Weissbourd, Brandon; et el. (2021) Whole-animal
multiplexed single-cell RNA-seq reveals transcriptional shifts across
Clytia medusa cell types ; Science Advances; Vol. 7; No. 48; Art.
No. eabh1683; PMCID PMC8626072; 10.1126/sciadv.abh1683
Sonn, Seong Keun; Seo, Seungwoon; et el. (2021) ER-associated
CTRP1 regulates mitochondrial fission via interaction with DRP1 ;
Experimental and Molecular Medicine; Vol. 53; 1769-1780; PMCID
PMC8639813; 10.1038/s12276-021-00701-z
Escolano, Amelia; Gristick, Harry B.; et el. (2021) Sequential
immunization of macaques elicits heterologous neutralizing antibodies
targeting the V3-glycan patch of HIV-1 Env ; Science Translational
Medicine; Vol. 13; No. 621; Art. No. abk1533; PMCID PMC8932345; 10.1126/scitranslmed.abk1533
Weissbourd, Brandon; Momose, Tsuyoshi; et el. (2021) A
genetically tractable jellyfish model for systems and evolutionary
neuroscience ; Cell; Vol. 184; No. 24; 5854-5868; PMCID PMC8629132;
10.1016/j.cell.2021.10.021
Rodriguez, Kellen R.; Sarraf, Namita; et el. (2021) A
Loser-Take-All DNA Circuit ; ACS Synthetic Biology; Vol. 10; No. 11;
2878-2885; PMCID PMC9286317; 10.1021/acssynbio.1c00318
Rahman, Atif and Pachter, Lior (2021) SWALO:
scaffolding with assembly likelihood optimization ; Nucleic Acids
Research; Vol. 49; No. 20; Art. No. e117; 10.1093/nar/gkab717
Yang, Zhe; Wang, Tongtong; et el. (2021) Predicting
changes in osmolality ; eLife; Vol. 10; Art. No. e74551; PMCID
PMC8601660; 10.7554/elife.74551
Wittmann, Bruce J.; Yue, Yisong; et el. (2021) Informed
training set design enables efficient machine learning-assisted directed
protein evolution ; Cell Systems; Vol. 12; No. 11; 1026-1045; 10.1016/j.cels.2021.07.008
Brune, Karl D.; Liekniņa, Ilva; et el. (2021) N-Terminal
Modification of Gly-His-Tagged Proteins with Azidogluconolactone ;
ChemBioChem; Vol. 22; No. 22; 3199-3207; 10.1002/cbic.202100381
Athavale, Soumitra V.; Gao, Shilong; et el. (2021) Biocatalytic,
Intermolecular C−H Bond Functionalization for the Synthesis of
Enantioenriched Amides ; Angewandte Chemie International Edition;
Vol. 60; No. 47; 24864-24869; PMCID PMC8578410; 10.1002/anie.202110873
Schwarzkopf, Maayan; Liu, Mike C.; et el. (2021) Hybridization
chain reaction enables a unified approach to multiplexed, quantitative,
high-resolution immunohistochemistry and in situ hybridization ;
Development; Vol. 148; No. 22; Art. No. dev199847; PMCID PMC8645210; 10.1242/dev.199847
Lloyd, M. K.; Trembath-Reichert, E.; et el. (2021) Methoxyl
stable isotopic constraints on the origins and limits of coal-bed
methane ; Science; Vol. 374; No. 6569; 894-897; 10.1126/science.abg0241
Quinodoz, Sofia A.; Jachowicz, Joanna W.; et el. (2021) RNA
promotes the formation of spatial compartments in the nucleus ; Cell;
Vol. 184; No. 23; 5775-5790; PMCID PMC9115877; 10.1016/j.cell.2021.10.014
Higgins, Irina; Chang, Le; et el. (2021) Unsupervised
deep learning identifies semantic disentanglement in single
inferotemporal face patch neurons ; Nature Communications; Vol. 12;
Art. No. 6456; 10.1038/s41467-021-26751-5
Barlow, Jacob T.; Leite, Gabriela; et el. (2021) Quantitative
sequencing clarifies the role of disruptor taxa, oral microbiota, and
strict anaerobes in the human small-intestine microbiome ;
Microbiome; Vol. 9; Art. No. 214; PMCID PMC8561862; 10.1186/s40168-021-01162-2
Parker, Hugo J.; De Kumar, Bony; et el. (2021) Analysis
of lamprey meis genes reveals that conserved inputs from Hox, Meis and
Pbx proteins control their expression in the hindbrain and neural
tube ; Developmental Biology; Vol. 479; 61-76; 10.1016/j.ydbio.2021.07.014
Chongtham, Anjalika; Isas, J. Mario; et el. (2021) Amplification
of neurotoxic HTTex1 assemblies in human neurons ; Neurobiology of
Disease; Vol. 159; Art. No. 105517; PMCID PMC8943833; 10.1016/j.nbd.2021.105517
Phan, Quynh T.; Lin, Jianfeng; et el. (2021) The
Globular C1q Receptor Is Required for Epidermal Growth Factor Receptor
Signaling during Candida albicans Infection ; mBio; Vol. 12; No. 6;
Art. No. e02716-21; PMCID PMC8561387; 10.1128/mBio.02716-21
Ji, Jenny; Winnett, Alexander; et el. (2021) Modulating
Factors of Household Transmission of SARS‑CoV‑2 in a Community-Based
Study ; American Journal of Tropical Medicine and Hygiene; Vol. 105;
No. 5; 313; 10.4269/ajtmh.abstract2021
Hueschen, Christina; Segev Zarko, Li-Av; et el. (2021) Actin
Organization and Dynamics in Motile Toxoplasma Gondii Parasites ;
American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5;
448-449; 10.4269/ajtmh.abstract2021
Gandhi, Shashank and Bronner, Marianne E. (2021) Seq
Your Destiny: Neural Crest Fate Determination in the Genomic Era ;
Annual Review of Genetics; Vol. 55; 349-376; 10.1146/annurev-genet-071719-020954
Cheng, Kai-Wen; Li, Shan; et el. (2021) Impacts
of p97 on Proteome Changes in Human Cells during Coronaviral
Replication ; Cells; Vol. 10; No. 11; Art. No. 2953; PMCID
PMC8616207; 10.3390/cells10112953
Woodward, Denise; Ricks, Ernest, Jr.; et el. (2021) The
Path of Science in Future Tibetan Buddhist Education ; Frontiers in
Communication; Vol. 6; Art. No. 731604; 10.3389/fcomm.2021.731604
Chen, Shun-Jia; Kim, Leehyeon; et el. (2021) Aminopeptidases
trim Xaa-Pro proteins, initiating their degradation by the Pro/N-degron
pathway ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 118; No. 43; Art. No. e2115430118; PMCID
PMC8639330; 10.1073/pnas.2115430118
Behbahani, Amir H.; Palmer, Emily H.; et el. (2021) Drosophila
re-zero their path integrator at the center of a fictive food patch ;
Current Biology; Vol. 31; No. 20; 4534-4546; PMCID PMC8551043; 10.1016/j.cub.2021.08.006
Abernathy, Morgan E.; Gristick, Harry B.; et el. (2021) Antibody
elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion
peptide and destroys a neutralizing epitope ; npj Vaccines; Vol. 6;
Art. No. 126; PMCID PMC8545924; 10.1038/s41541-021-00387-4
Brown, David; Altermatt, Michael; et el. (2021) Deep
Parallel Characterization of AAV Tropism and AAV-Mediated
Transcriptional Changes via Single-Cell RNA Sequencing ; Frontiers in
Immunology; Vol. 12; Art. No. 730825; PMCID PMC8574206; 10.3389/fimmu.2021.730825
Abernathy, Morgan E.; Dam, Kim-Marie A.; et el. (2021) How
Antibodies Recognize Pathogenic Viruses: Structural Correlates of
Antibody Neutralization of HIV-1, SARS-CoV-2, and Zika ; Viruses;
Vol. 13; No. 10; Art. No. 2106; PMCID PMC8537525; 10.3390/v13102106
Rawlings, Thomas M.; Makwana, Komal; et el. (2021) Modelling
the impact of decidual senescence on embryo implantation in human
endometrial assembloids ; eLife; Vol. 10; Art. No. e69603; PMCID
PMC8523170; 10.7554/elife.69603
Stangherlin, Alessandra; Watson, Joseph L.; et el. (2021) Compensatory
ion transport buffers daily protein rhythms to regulate osmotic balance
and cellular physiology ; Nature Communications; Vol. 12; Art.
No. 6035; PMCID PMC8520019; 10.1038/s41467-021-25942-4
Phillips, Daniel A.; Zacharoff, Lori A.; et el. (2021) A
bacterial membrane sculpting protein with BAR domain-like activity ;
eLife; Vol. 10; Art. No. e60049; PMCID PMC8687657; 10.7554/elife.60049
Parker, Joseph and Kronauer, Daniel J. C. (2021) How
ants shape biodiversity ; Current Biology; Vol. 31; No. 19;
R1208-R1214; 10.1016/j.cub.2021.08.015
Booeshaghi, A. Sina; Yao, Zizhen; et el. (2021) Isoform
cell-type specificity in the mouse primary motor cortex ; Nature;
Vol. 598; No. 7879; 195-199; PMCID PMC8494650; 10.1038/s41586-021-03969-3
Rebboah, Elisabeth; Reese, Fairlie; et el. (2021) Mapping
and modeling the genomic basis of differential RNA isoform expression at
single-cell resolution with LR-Split-seq ; Genome Biology; Vol. 22;
Art. No. 286; PMCID PMC8495978; 10.1186/s13059-021-02505-w
Yao, Zizhen; Liu, Hanqing; et el. (2021) A
transcriptomic and epigenomic cell atlas of the mouse primary motor
cortex ; Nature; Vol. 598; No. 7879; 103-110; PMCID PMC8494649; 10.1038/s41586-021-03500-8
Adkins, Ricky S.; Aldridge, Andrew I.; et el. (2021) A
multimodal cell census and atlas of the mammalian primary motor
cortex ; Nature; Vol. 598; No. 7879; 86-102; 10.1038/s41586-021-03950-0
Chen, Peiwei and Aravin, Alexei A. (2021) Transposon-taming
piRNAs in the germline: Where do they come from? ; Molecular Cell;
Vol. 81; No. 19; 3884-3885; 10.1016/j.molcel.2021.09.017
Rothenberg, Ellen V. (2021) Logic
and lineage impacts on functional transcription factor deployment for
T-cell fate commitment ; Biophysical Journal; Vol. 120; No. 19;
4162-4181; 10.1016/j.bpj.2021.04.002
Tran, Ngoc-Han; Carter, Stephen D.; et el. (2021) The
stress-sensing domain of activated IRE1α forms helical filaments in
narrow ER membrane tubes ; Science; Vol. 374; No. 6563; 52-57; 10.1126/science.abh2474
Osorio‐Rodriguez, Daniela; Razo-Mejia, Manuel; et el. (2021) Sulfur
isotope fractionations constrain the biological cycling of
dimethylsulfoniopropionate in the upper ocean ; Limnology and
Oceanography; Vol. 66; No. 10; 3607-3618; 10.1002/lno.11901
Zhang, Bai-Hua; Zhou, Yuanping; et el. (2021) T
cell immunity independent HBV clearance and validation of a new HBV cure
strategy in HBV infected uPA/SCID chimeric mice ; Hepatology; Vol.
74; No. S1; 64A; 10.1002/hep.32187
Davidson, Cristin D.; Gibson, Alana L.; et el. (2021) Improved
systemic AAV gene therapy with a neurotrophic capsid in Niemann–Pick
disease type C1 mice ; Life Science Alliance; Vol. 4; No. 10; Art.
No. e202101040; PMCID PMC8380657; 10.26508/lsa.202101040
Bhat, Prashant; Honson, Drew; et el. (2021) Nuclear
compartmentalization as a mechanism of quantitative control of gene
expression ; Nature Reviews. Molecular Cell Biology; Vol. 22; No. 10;
653-670; 10.1038/s41580-021-00387-1
Booeshaghi, A. Sina; Kil, Yeokyoung; et el. (2021) Low-cost,
scalable, and automated fluid sampling for fluidics applications ;
HardwareX; Vol. 10; Art. No. e00201; 10.1016/j.ohx.2021.e00201
Martik, Megan L. and Bronner, Marianne E. (2021) Riding
the crest to get a head: neural crest evolution in vertebrates ;
Nature Reviews. Neuroscience; Vol. 22; No. 10; 616-626; 10.1038/s41583-021-00503-2
Breunig, Stephanie; Chapman, Alex; et el. (2021) Modification
of Insulin Lispro by Incorporation of Non-canonical Proline
Residues ; Protein Science; Vol. 30; No. S1; 89; 10.1002/pro.4191
Takei, Yodai; Zheng, Shiwei; et el. (2021) Single-cell
nuclear architecture across cell types in the mouse brain ; Science;
Vol. 374; No. 6567; 586-594; 10.1126/science.abj1966
Taylor, Dallas N.; Davidson, Samuel R.; et el. (2021) A
Cooperative DNA Catalyst ; Journal of the American Chemical Society;
Vol. 143; No. 38; 15567-15571; PMCID PMC8609974; 10.1021/jacs.1c07122
Jette, Claudia A.; Cohen, Alexander A.; et el. (2021) Broad
cross-reactivity across sarbecoviruses exhibited by a subset of COVID-19
donor-derived neutralizing antibodies ; Cell Reports; Vol. 36;
No. 13; Art. No. 109760; PMCID PMC8423902; 10.1016/j.celrep.2021.109760
Kahan, Anat; Greenbaum, Alon; et el. (2021) Light-guided
sectioning for precise in situ localization and tissue interface
analysis for brain-implanted optical fibers and GRIN lenses ; Cell
Reports; Vol. 36; No. 13; Art. No. 109744; PMCID PMC8552649; 10.1016/j.celrep.2021.109744
Zhu, Meng; Shahbazi, Marta; et el. (2021) Human
embryo polarization requires PLC signaling to mediate trophectoderm
specification ; eLife; Vol. 10; Art. No. e65068; 10.7554/eLife.65068
Belliveau, Nathan M.; Chure, Griffin; et el. (2021) Fundamental
limits on the rate of bacterial growth and their influence on proteomic
composition ; Cell Systems; Vol. 12; No. 9; 924-944; PMCID
PMC8460600; 10.1016/j.cels.2021.06.002
Sozen, Berna; Jorgensen, Victoria; et el. (2021) Reconstructing
aspects of human embryogenesis with pluripotent stem cells ; Nature
Communications; Vol. 12; Art. No. 5550; PMCID PMC8455697; 10.1038/s41467-021-25853-4
Watkins-Dulaney, Ella J.; Dunham, Noah P.; et el. (2021) Asymmetric
Alkylation of Ketones Catalyzed by Engineered TrpB ; Angewandte
Chemie International Edition; Vol. 60; No. 39; 21412-21417; PMCID
PMC8440449; 10.1002/anie.202106938
Wrobel, Chester J. J.; Yu, Jingfang; et el. (2021) Combinatorial
Assembly of Modular Glucosides via Carboxylesterases Regulates C.
elegans Starvation Survival ; Journal of the American Chemical
Society; Vol. 143; No. 36; 14676-14683; PMCID PMC8594405; 10.1021/jacs.1c05908
Ullah, Irfan; Prévost, Jérémie; et el. (2021) Live
imaging of SARS-CoV-2 infection in mice reveals that neutralizing
antibodies require Fc function for optimal efficacy ; Immunity; Vol.
54; No. 9; 2143-2158; PMCID PMC8372518; 10.1016/j.immuni.2021.08.015
Olson, Christine A.; Iñiguez, Alonso J.; et el. (2021) Alterations
in the gut microbiota contribute to cognitive impairment induced by the
ketogenic diet and hypoxia ; Cell Host and Microbe; Vol. 29; No. 9;
1378-1392; PMCID PMC8429275; 10.1016/j.chom.2021.07.004
Buarque de Macedo, Robert; Andò, Edward; et el. (2021) Unearthing
real-time 3D ant tunneling mechanics ; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 118; No. 36;
Art. No. e2102267118; PMCID PMC8433525; 10.1073/pnas.2102267118
Zhang, Xiaoyi; Gui, Lin; et el. (2021) Conserved
L464 in p97 D1–D2 linker is critical for p97 cofactor regulated ATPase
activity ; Biochemical Journal; Vol. 478; No. 17; 3185-3204; PMCID
PMC9041309; 10.1042/bcj20210288
Chen, Peiwei; Luo, Yicheng; et el. (2021) RDC
complex executes a dynamic piRNA program during Drosophila
spermatogenesis to safeguard male fertility ; PLoS Genetics; Vol. 17;
No. 9; Art. No. e1009591; PMCID PMC8412364; 10.1371/journal.pgen.1009591
Lee, Kyu Hyun; Ni, Yu-Li; et el. (2021) Electrode
pooling can boost the yield of extracellular recordings with switchable
silicon probes ; Nature Communications; Vol. 12; Art. No. 5245; 10.1038/s41467-021-25443-4
Ákos, Zsuzsa; Dunipace, Leslie; et el. (2021) NaNuTrap:
a technique for in vivo cell nucleus labelling using nanobodies ;
Development; Vol. 148; No. 18; Art. No. dev199822; 10.1242/dev.199822
Kaplan, Mohammed; Chreifi, Georges; et el. (2021) In
situ imaging of bacterial outer membrane projections and associated
protein complexes using electron cryo-tomography ; eLife; Vol. 10;
Art. No. e73099; 10.7554/eLife.73099
Yeung, Enoch; Kim, Jongmin; et el. (2021) Data-driven
network models for genetic circuits from time-series data with
incomplete measurements ; Journal of the Royal Society Interface;
Vol. 18; No. 182; Art. No. 20210413; 10.1098/rsif.2021.0413
Shehata, Mohammad; Cheng, Miao; et el. (2021) Team
Flow Is a Unique Brain State Associated with Enhanced Information
Integration and Interbrain Synchrony ; eNeuro; Vol. 8; No. 5;
ENEURO.0133-21.2021; PMCID PMC8513532; 10.1523/eneuro.0133-21.2021
Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2021) Protein
profiling in the habenula after chronic (–)-menthol exposure in
mice ; Journal of Neurochemistry; Vol. 158; No. 6; 1345-1358; PMCID
PMC8577691; 10.1111/jnc.15495
O’Toole, George A.; Crabbé, Aurélie; et el. (2021) Model
Systems to Study the Chronic, Polymicrobial Infections in Cystic
Fibrosis: Current Approaches and Exploring Future Directions ; mBio;
Vol. 12; No. 5; Art. No. mBio.01763-21; PMCID PMC8546538; 10.1128/mbio.01763-21
Oikonomou, Catherine M. and Jensen, Grant J. (2021) The
Atlas of Bacterial & Archaeal Cell Structure: an Interactive
Open-Access Microbiology Textbook ; Journal of Microbiology &
Biology Education; Vol. 22; No. 2; Art. No. e00128-21; PMCID PMC8442016;
10.1128/jmbe.00128-21
Piacentino, Michael L.; Hutchins, Erica J.; et el. (2021) Essential
function and targets of BMP signaling during midbrain neural crest
delamination ; Developmental Biology; Vol. 477; 251-261; 10.1016/j.ydbio.2021.06.003
McManus, John B.; Bernhards, Casey B.; et el. (2021) Rapid
Characterization of Genetic Parts with Cell-free Systems ; Journal of
Visualized Experiments; Vol. 174; Art. No. e62816; 10.3791/62816
Qu, Zijie; Schildknecht, Dominik; et el. (2021) Persistent
fluid flows defined by active matter boundaries ; Communications
Physics; Vol. 4; Art. No. 198; 10.1038/s42005-021-00703-3
Lin, Chujun; Keleş, Ümit; et el. (2021) Four
dimensions characterize attributions from faces using a representative
set of English trait words ; Nature Communications; Vol. 12; Art.
No. 5168; 10.1038/s41467-021-25500-y
Desai, Ravi V.; Chen, Xinyue; et el. (2021) A
DNA repair pathway can regulate transcriptional noise to promote cell
fate transitions ; Science; Vol. 373; No. 6557; Art. No. eabc6506;
PMCID PMC8667278; 10.1126/science.abc6506
Gong, Wuming; Granados, Alejandro A.; et el. (2021) Benchmarked
approaches for reconstruction of in vitro cell lineages and in silico
models of C. elegans and M. musculus developmental trees ; Cell
Systems; Vol. 12; No. 8; 810-826; 10.1016/j.cels.2021.05.008
Mackinlay, Kirsty M. L.; Weatherbee, Bailey A. T.; et el. (2021) An
in vitro stem cell model of human epiblast and yolk sac interaction ;
eLife; Vol. 10; Art. No. e63930; PMCID PMC8370770; 10.7554/elife.63930
Dar, Daniel; Dar, Nina; et el. (2021) Spatial
transcriptomics of planktonic and sessile bacterial populations at
single-cell resolution ; Science; Vol. 373; No. 6556; Art.
No. eabi4882; PMCID PMC8454218; 10.1126/science.abi4882
Muecksch, Frauke; Weisblum, Yiska; et el. (2021) Affinity
maturation of SARS-CoV-2 neutralizing antibodies confers potency,
breadth, and resilience to viral escape mutations ; Immunity; Vol.
54; No. 8; 1853-1868; PMCID PMC8323339; 10.1016/j.immuni.2021.07.008
West, Anthony P., Jr.; Wertheim, Joel O.; et el. (2021) Detection
and characterization of the SARS-CoV-2 lineage B.1.526 in New York ;
Nature Communications; Vol. 12; Art. No. 4886; PMCID PMC8352861; 10.1038/s41467-021-25168-4
Dillman, Adler R; Korff, Wyatt; et el. (2021) Steinernema
carpocapsae jumps with greater velocity and acceleration than previously
reported ; microPublication Biology; Art. No. 000435; PMCID
PMC8329732; 10.17912/micropub.biology.000435
Hosokawa, Hiroyuki; Koizumi, Maria; et el. (2021) Stage-specific
action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse
pro-T cells ; Journal of Experimental Medicine; Vol. 218; No. 8; Art.
No. e20202648; PMCID PMC8241539; 10.1084/jem.20202648
Hensley, Matthew K.; Bain, William G.; et el. (2021) Intractable
Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute
Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a
Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case
Study ; Clinical Infectious Diseases; Vol. 73; No. 3; e815-e821;
PMCID PMC7929077; 10.1093/cid/ciab072
Booeshaghi, A. Sina and Pachter, Lior (2021) Normalization
of single-cell RNA-seq counts by log(x+1)* or log(1+x)* ;
Bioinformatics; Vol. 37; No. 15; 2223-2224; PMCID PMC7989636; 10.1093/bioinformatics/btab085
Wittmann, Bruce J.; Johnston, Kadina E; et el. (2021) Advances
in machine learning for directed evolution ; Current Opinion in
Structural Biology; Vol. 69; 11-18; 10.1016/j.sbi.2021.01.008
Jiménez Otero, Fernanda; Chadwick, Grayson L.; et el. (2021) Evidence
of a Streamlined Extracellular Electron Transfer Pathway from Biofilm
Structure, Metabolic Stratification, and Long-Range Electron Transfer
Parameters ; Applied and Environmental Microbiology; Vol. 87; No. 17;
Art. No. AEM.00706-21; PMCID PMC8357294; 10.1128/aem.00706-21
Varuzhanyan, Grigor; Ladinsky, Mark S.; et el. (2021) Fis1
ablation in the male germline disrupts mitochondrial morphology and
mitophagy, and arrests spermatid maturation ; Development; Vol. 148;
No. 16; Art. No. dev199686; PMCID PMC8380467; 10.1242/dev.199686
Bjorkman, Pamela (2021) Neutralizing
antibodies against coronaviruses ; Microscopy and Microanalysis; Vol.
27; No. S1; 1112-1113; 10.1017/s1431927621004177
Wimsatt, Gregory; Saira, Olli-Pentti; et el. (2021) Harnessing
fluctuations in thermodynamic computing via time-reversal
symmetries ; Physical Review Research; Vol. 3; No. 3; Art.
No. 033115; 10.1103/physrevresearch.3.033115
Szymanski, Linda J.; Kellis, Spencer; et el. (2021) Neuropathological
effects of chronically implanted, intracortical microelectrodes in a
tetraplegic patient ; Journal of Neural Engineering; Vol. 18; No. 4;
Art. No. 0460b9; 10.1088/1741-2552/ac127e
Kishi, Yuriko and Parker, Joseph (2021) Cell
type innovation at the tips of the animal tree ; Current Opinion in
Genetics and Development; Vol. 69; 112-121; 10.1016/j.gde.2021.01.009
Schildknecht, Dominik and Thomson, Matt (2021) Phenomenological
model of motility by spatiotemporal modulation of active
interactions ; New Journal of Physics; Vol. 23; No. 8; Art.
No. 083001; 10.1088/1367-2630/ac1144
Garber, Arkadiy I.; Kupper, Maria; et el. (2021) The
Evolution of Interdependence in a Four-Way Mealybug Symbiosis ;
Genome Biology and Evolution; Vol. 13; No. 8; Art. No. evab123; PMCID
PMC8331144; 10.1093/gbe/evab123
Michels, Dana E.; Lomenick, Brett; et el. (2021) Amino
Acid Analog Induces Stress Response in Marine Synechococcus ; Applied
and Environmental Microbiology; Vol. 87; No. 15; Art. No. e00200-21; 10.1128/aem.00200-21
Nandi, Purbasha; Li, Shan; et el. (2021) Structural
and Functional Analysis of Disease-Linked p97 ATPase Mutant
Complexes ; International Journal of Molecular Sciences; Vol. 22;
No. 15; Art. No. 8079; PMCID PMC8347982; 10.3390/ijms22158079
Li, Yan; Chen, Pei-Ju; et el. (2021) Neural
mechanism of spatio-chromatic opponency in the Drosophila amacrine
neurons ; Current Biology; Vol. 31; No. 14; 3040-3052; 10.1016/j.cub.2021.04.068
Kliemann, Dorit; Adolphs, Ralph; et el. (2021) Reorganization
of the Social Brain in Individuals with Only One Intact Cerebral
Hemisphere ; Brain Sciences; Vol. 11; No. 8; Art. No. 965; PMCID
PMC8392565; 10.3390/brainsci11080965
Nagai, Jun; Bellafard, Arash; et el. (2021) Specific
and behaviorally consequential astrocyte G_q GPCR signaling attenuation
in vivo with iβARK ; Neuron; Vol. 109; No. 14; 2256-2274; PMCID
PMC8418870; 10.1016/j.neuron.2021.05.023
Grant, Stephen N. and Lester, Henry A. (2021) Regulation
of epithelial sodium channel activity by SARS-CoV-1 and SARS-CoV-2
proteins ; Biophysical Journal; Vol. 120; No. 14; 2805-2813; PMCID
PMC8238646; 10.1016/j.bpj.2021.06.005
Wani, Abubakar; Zhu, Jiang; et el. (2021) Neuronal
VCP loss of function recapitulates FTLD-TDP pathology ; Cell Reports;
Vol. 36; No. 3; Art. No. 109399; PMCID PMC8383344; 10.1016/j.celrep.2021.109399
Wu, Wei-Li; Adame, Mark D.; et el. (2021) Microbiota
regulate social behaviour via stress response neurons in the brain ;
Nature; Vol. 595; No. 7867; 409-414; PMCID PMC8346519; 10.1038/s41586-021-03669-y
Klink, P. Christiaan; Aubry, Jean-François; et el. (2021) Combining
brain perturbation and neuroimaging in non-human primates ;
NeuroImage; Vol. 235; Art. No. 118017; 10.1016/j.neuroimage.2021.118017
Chang, Le; Egger, Bernhard; et el. (2021) Explaining
face representation in the primate brain using different computational
models ; Current Biology; Vol. 31; No. 13; 2785-2795; PMCID
PMC8566016; 10.1016/j.cub.2021.04.014
Cohen, Sarah M.; Le, Henry H.; et el. (2021) A
Mutation of lips-6 in C. elegans ; microPublication Biology; Art.
No. 000419; PMCID PMC8271349; 10.17912/micropub.biology.000419
Greaney, Allison J.; Starr, Tyler N.; et el. (2021) Mapping
mutations to the SARS-CoV-2 RBD that escape binding by different classes
of antibodies ; Nature Communications; Vol. 12; Art. No. 4196; PMCID
PMC8263750; 10.1038/s41467-021-24435-8
Haugh, Kelsey A.; Ladinsky, Mark S.; et el. (2021) In
vivo imaging of retrovirus infection reveals a role for Siglec-1/CD169
in multiple routes of transmission ; eLife; Vol. 10; Art. No. e64179;
PMCID PMC8298093; 10.7554/eLife.64179
Zhang, Gang; Li, Shan; et el. (2021) AAA
ATPases as therapeutic targets: Structure, functions, and small-molecule
inhibitors ; European Journal of Medicinal Chemistry; Vol. 219; Art.
No. 113446; PMCID PMC8165034; 10.1016/j.ejmech.2021.113446
Rosenberg, Matthew; Zhang, Tony; et el. (2021) Mice
in a labyrinth show rapid learning, sudden insight, and efficient
exploration ; eLife; Vol. 10; Art. No. e66175; PMCID PMC8294850; 10.7554/eLife.66175
Pleiner, Tino; Hazu, Masami; et el. (2021) WNK1
is an assembly factor for the human ER membrane protein complex ;
Molecular Cell; Vol. 81; No. 13; 2693-2704; PMCID PMC8254792; 10.1016/j.molcel.2021.04.013
Huang, Xiawei; Hu, Hongmiao; et el. (2021) Binding
of guide piRNA triggers methylation of the unstructured N-terminal
region of Aub leading to assembly of the piRNA amplification
complex ; Nature Communications; Vol. 12; Art. No. 4061; 10.1038/s41467-021-24351-x
Bloom, Joshua S.; Sathe, Laila; et el. (2021) Massively
scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of
pooled and barcoded nasal and saliva samples ; Nature Biomedical
Engineering; Vol. 5; No. 7; 657-665; PMCID PMC7480060; 10.1038/s41551-021-00754-5
Arnold, Frances (2021) Innovation
by evolution: bringing new chemistry to life ; Acta Crystallographica
Section A; Vol. A77; No. Supplement; Art. No. a70; 10.1107/S0108767321099293
Melsted, Páll; Booeshaghi, A. Sina; et el. (2021) Modular,
efficient and constant-memory single-cell RNA-seq preprocessing ;
Nature Biotechnology; Vol. 39; No. 7; 813-818; 10.1038/s41587-021-00870-2
Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate
Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid
Oxidation by Citrobacter portucalensis MBL ; mBio; Vol. 12; No. 4;
Art. No. e02265-21; 10.1128/mBio.02265-21
Dukes, Daniel; Abrams, Kathryn; et el. (2021) The
rise of affectivism ; Nature Human Behaviour; Vol. 5; No. 7; 816-820;
PMCID PMC8319089; 10.1038/s41562-021-01130-8
Liu, Yang; Bernstein, Jeremy; et el. (2021) Learning
by Turning: Neural Architecture Aware Optimisation ; Proceedings of
Machine Learning Research; Vol. 139; 6748-6758; 10.48550/arXiv.2102.07227
Phillips, Alexandra A.; Speth, Daan R.; et el. (2021) Microbial
succession and dynamics in meromictic Mono Lake, California ;
Geobiology; Vol. 19; No. 4; 376-393; 10.1111/gbi.12437
Lisitskaya, L.; Esyunina, D.; et el. (2021) Analysis
of a putative nuclease associated with the Argonaute protein from
Rhodobacter sphaeroides ; FEBS Open Bio; Vol. 11; No. S1; 238; 10.1002/2211-5463.13205
Kaplan, Mohammed; Wang, Yuhang; et el. (2021) Programmed
Flagellar Ejection in Caulobacter crescentus Leaves PL-subcomplexes ;
Journal of Molecular Biology; Vol. 433; No. 13; Art. No. 167004; PMCID
PMC9843737; 10.1016/j.jmb.2021.167004
Yang, Xiaohong; Yang, Xiaoxiao; et el. (2021) A
GH89 human α-N-acetylglucosaminidase (hNAGLU) homologue from gut microbe
Bacteroides thetaiotaomicron capable of hydrolyzing heparosan
oligosaccharides ; AMB Express; Vol. 11; Art. No. 94; PMCID
PMC8225759; 10.1186/s13568-021-01253-1
Sarai, Nicholas S.; Levin, Benjamin J.; et el. (2021) Biocatalytic
Transformations of Silicon—the Other Group 14 Element ; ACS Central
Science; Vol. 7; No. 6; 944-953; PMCID PMC8227617; 10.1021/acscentsci.1c00182
Sender, Ron; Bar-On, Yinon M.; et el. (2021) The
total number and mass of SARS-CoV-2 virions ; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 118;
No. 25; Art. No. e2024815118; PMCID PMC8237675; 10.1073/pnas.2024815118
Marlow, Jeffrey J.; Hoer, Daniel; et el. (2021) Carbonate-hosted
microbial communities are prolific and pervasive methane oxidizers at
geologically diverse marine methane seep sites ; Proceedings of the
National Academy of Sciences; Vol. 118; No. 25; Art. No. e2006857118;
PMCID PMC8237665; 10.1073/pnas.2006857118
Molè, Matteo A.; Coorens, Tim H. H.; et el. (2021) A
single cell characterisation of human embryogenesis identifies
pluripotency transitions and putative anterior hypoblast centre ;
Nature Communications; Vol. 12; Art. No. 3679; 10.1038/s41467-021-23758-w
Phillips, Rob (2021) Schrödinger’s
What Is Life? at 75 ; Cell Systems; Vol. 12; No. 6; 465-476; 10.1016/j.cels.2021.05.013
Hoffmann, Magnus A. G.; Kieffer, Collin; et el. (2021) In
vitro characterization of engineered red blood cells as viral traps
against HIV-1 and SARS-CoV-2 ; Molecular Therapy - Methods and
Clinical Development; Vol. 21; 161-170; PMCID PMC7944778; 10.1016/j.omtm.2021.03.003
Scheid, Johannes F.; Barnes, Christopher O.; et el. (2021) B
cell genomics behind cross-neutralization of SARS-CoV-2 variants and
SARS-CoV ; Cell; Vol. 184; No. 12; 3205-3221; PMCID PMC8064835; 10.1016/j.cell.2021.04.032
Gustafsson, Johan; Robinson, Jonathan; et el. (2021) BUTTERFLY:
addressing the pooled amplification paradox with unique molecular
identifiers in single-cell RNA-seq ; Genome Biology; Vol. 22; Art.
No. 174; PMCID PMC8188791; 10.1186/s13059-021-02386-z
Vulovic, Ivan; Yao, Qing; et el. (2021) Generation
of ordered protein assemblies using rigid three-body fusion ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 23; Art. No. e2015037118; PMCID PMC8201882; 10.1073/pnas.2015037118
Chen, Peiwei; Kotov, Alexei A.; et el. (2021) piRNA-mediated
gene regulation and adaptation to sex-specific transposon expression in
D. melanogaster male germline ; Genes and Development; Vol. 35;
No. 11-12; 914-935; PMCID PMC8168559; 10.1101/gad.345041.120
Sozen, Berna; Cornwall-Scoones, Jake; et el. (2021) The
dynamics of morphogenesis in stem cell-based embryology: Novel insights
for symmetry breaking ; Developmental Biology; Vol. 474; 82-90; PMCID
PMC8259461; 10.1016/j.ydbio.2020.12.005
Solovieva, Tatiana and Bronner-Fraser, Marianne (2021) Schwann
cell precursors: Where they come from and where they go ; Cells &
Development; Vol. 166; Art. No. 203686; PMCID PMC8496487; 10.1016/j.cdev.2021.203686
Cheng, Kai-Wen; Wang, Feng; et el. (2021) Evaluation
of artificial signal peptides for secretion of two lysosomal enzymes in
CHO cells ; Biochemical Journal; Vol. 478; No. 12; 2309-2319; PMCID
PMC9074758; 10.1042/bcj20210015
Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2021) Unifying
synthetic embryology ; Developmental Biology; Vol. 474; 1-4; PMCID
PMC8257322; 10.1016/j.ydbio.2021.03.007
Liu, Zhen and Arnold, Frances H. (2021) New-to-nature
chemistry from old protein machinery: carbene and nitrene
transferases ; Current Opinion in Biotechnology; Vol. 69; 43-51;
PMCID PMC8225731; 10.1016/j.copbio.2020.12.005
Weatherbee, Bailey A. T.; Cui, Tongtong; et el. (2021) Modeling
human embryo development with embryonic and extra-embryonic stem
cells ; Developmental Biology; Vol. 474; 91-99; PMCID PMC8232073; 10.1016/j.ydbio.2020.12.010
Kaplan, Mohammed; Tocheva, Elitza I.; et el. (2021) Loss
of the Bacterial Flagellar Motor Switch Complex upon Cell Lysis ;
mBio; Vol. 12; No. 3; Art. No. mBio.00298-21; PMCID PMC8263016; 10.1128/mBio.00298-21
Chreifi, Georges; Chen, Songye; et el. (2021) Rapid
tilt-series method for cryo-electron tomography: Characterizing stage
behavior during FISE acquisition ; Journal of Structural Biology;
Vol. 213; No. 2; Art. No. 107716; PMCID PMC8217199; 10.1016/j.jsb.2021.107716
Tookmanian, Elise M.; Belin, Brittany J.; et el. (2021) The
role of hopanoids in fortifying rhizobia against a changing climate ;
Environmental Microbiology; Vol. 23; No. 6; 2906-2918; 10.1111/1462-2920.15594
Livanos, Alexandra E.; Jha, Divya; et el. (2021) Intestinal
Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients
With Gastrointestinal Symptoms ; Gastroenterology; Vol. 160; No. 7;
2435-2450; PMCID PMC7931673; 10.1053/j.gastro.2021.02.056
Jewett, Andrew I.; Stelter, David; et el. (2021) Moltemplate:
A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft
Condensed Matter Physics ; Journal of Molecular Biology; Vol. 433;
No. 11; Art. No. 166841; 10.1016/j.jmb.2021.166841
Smith, Sheena N.; Schubert, Rajib; et el. (2021) The
SHREAD gene therapy platform for paracrine delivery improves tumor
localization and intratumoral effects of a clinical antibody ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 21; Art. No. e2017925118; PMCID PMC8166199; 10.1073/pnas.2017925118
Mackelprang, Rebecca; Aurand, Emily R.; et el. (2021) Guiding
Ethical Principles in Engineering Biology Research ; ACS Synthetic
Biology; Vol. 10; No. 5; 907-910; 10.1021/acssynbio.1c00129
Hochrein, Lisa M.; Li, Heyun; et el. (2021) High-Performance
Allosteric Conditional Guide RNAs for Mammalian Cell-Selective
Regulation of CRISPR/Cas ; ACS Synthetic Biology; Vol. 10; No. 5;
964-971; 10.1021/acssynbio.1c00037
De Gasparo, Raoul; Pedotti, Mattia; et el. (2021) Bispecific
IgG neutralizes SARS-CoV-2 variants and prevents escape in mice ;
Nature; Vol. 593; No. 7859; 424-428; PMCID PMC8330819; 10.1038/s41586-021-03461-y
Middelkoop, Teije C.; Garcia-Baucells, Júlia; et el. (2021) CYK-1/Formin
activation in cortical RhoA signaling centers promotes organismal
left–right symmetry breaking ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 118; No. 20; Art.
No. e2021814118; PMCID PMC8157923; 10.1073/pnas.2021814118
Stevens, Leslie M.; Kim, Goheun; et el. (2021) Light-dependent
N-end rule-mediated disruption of protein function in Saccharomyces
cerevisiae and Drosophila melanogaster ; PLOS Genetics; Vol. 17;
No. 5; Art. No. e1009544; 10.1371/journal.pgen.1009544
Smith, Edward J.; Farshim, Pamela P.; et el. (2021) Use
of high-content imaging to quantify transduction of AAV-PHP viruses in
the brain following systemic delivery ; Brain Communications; Vol. 3;
No. 2; Art. No. fcab105; PMCID PMC8200048; 10.1093/braincomms/fcab105
Bloom, Jesse D.; Chan, Yujia Alina; et el. (2021) Investigate
the origins of COVID-19 ; Science; Vol. 372; No. 6543; 694; PMCID
PMC9520851; 10.1126/science.abj0016
Garcia-Borràs, Marc; Kan, S. B. Jennifer; et el. (2021) Origin
and Control of Chemoselectivity in Cytochrome c Catalyzed Carbene
Transfer into Si–H and N–H bonds ; Journal of the American Chemical
Society; Vol. 143; No. 18; 7114-7123; PMCID PMC9292473; 10.1021/jacs.1c02146
Cohen, Sarah M.; Sun, Jessica J.; et el. (2021) Transcriptional
Response to a Dauer-Inducing Ascaroside Cocktail in Late L1 in C.
elegans ; microPublication Biology; Vol. 2021; Art. No. 000397; PMCID
PMC8116936; 10.17912/micropub.biology.000397
He, Xiaojia; Chadwick, Grayson L.; et el. (2021) Controls
on Interspecies Electron Transport and Size Limitation of Anaerobically
Methane-Oxidizing Microbial Consortia ; mBio; Vol. 12; No. 3; Art.
No. e03620-20; 10.1128/mBio.03620-20
He, Xiaojia; Chadwick, Grayson; et el. (2021) Spatially
Resolved Electron Transport through Anode‐Respiring Geobacter
sulfurreducens Biofilms: Controls and Constraints ; ChemElectroChem;
Vol. 8; No. 10; 1747-1758; 10.1002/celc.202100111
Orietti, Lorenzo C.; Rosa, Viviane Souza; et el. (2021) Embryo
Size Regulates the Timing and Mechanism of Pluripotent Tissue
Morphogenesis ; Stem Cell Reports; Vol. 16; No. 5; 1182-1196; PMCID
PMC8185375; 10.1016/j.stemcr.2020.09.004
Guo, Jianying; Wang, Peizhe; et el. (2021) Machine
learning-assisted high-content analysis of pluripotent stem cell-derived
embryos in vitro ; Stem Cell Reports; Vol. 16; No. 5; 1331-1346;
PMCID PMC8185434; 10.1016/j.stemcr.2021.03.018
Graybuck, Lucas T.; Daigle, Tanya L.; et el. (2021) Enhancer
viruses for combinatorial cell-subclass-specific labeling ; Neuron;
Vol. 109; No. 9; 1449-1464; PMCID PMC8610077; 10.1016/j.neuron.2021.03.011
Norman, Sumner L.; Maresca, David; et el. (2021) Single-trial
decoding of movement intentions using functional ultrasound
neuroimaging ; Neuron; Vol. 109; No. 9; 1554-1566; PMCID PMC8105283;
10.1016/j.neuron.2021.03.003
Agudelo, Marianna; Palus, Martin; et el. (2021) Broad
and potent neutralizing human antibodies to tick-borne flaviviruses
protect mice from disease ; Journal of Experimental Medicine; Vol.
218; No. 5; Art. No. e20210236; PMCID PMC8040517; 10.1084/jem.20210236
Varuzhanyan, Grigor; Chen, Hsiuchen; et el. (2021) Mitochondrial
fission factor (Mff) is required for organization of the mitochondrial
sheath in spermatids ; Biochimica et Biophysica Acta - General
Subjects; Vol. 1865; No. 5; Art. No. 129845; PMCID PMC7904653; 10.1016/j.bbagen.2021.129845
Robertson, Wesley E.; Funke, Louise F. H.; et el. (2021) Creating
custom synthetic genomes in Escherichia coli with REXER and GENESIS ;
Nature Protocols; Vol. 16; No. 5; 2345-2380; 10.1038/s41596-020-00464-3
Peck, Ariana; Yao, Qing; et el. (2021) Challenges
in solving structures from radiation-damaged tomograms of protein
nanocrystals assessed by simulation ; Acta Crystallographica Section
D: Biological Crystallography; Vol. D77; No. 5; 572-586; PMCID
PMC8098477; 10.1107/S2059798321002369
Ashford, Oliver S.; Guan, Shuzhe; et el. (2021) A
chemosynthetic ecotone—“chemotone”—in the sediments surrounding deep-sea
methane seeps ; Limnology and Oceanography; Vol. 66; No. 5;
1687-1702; 10.1002/lno.11713
Dutka, Przemysław; Malounda, Dina; et el. (2021) Measuring
gas vesicle dimensions by electron microscopy ; Protein Science; Vol.
30; No. 5; 1081-1086; PMCID PMC8040859; 10.1002/pro.4056
Kim, Jane H.; Spero, Melanie; et el. (2021) Chlorate
And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And
Lead To Healing Of Chronic Wounds ; Wound Repair and Regeneration;
Vol. 29; No. 3; A44-A45; 10.1111/wrr.12921
Chen, Zibo and Elowitz, Michael B. (2021) Programmable
protein circuit design ; Cell; Vol. 184; No. 9; 2284-2301; PMCID
PMC8087657; 10.1016/j.cell.2021.03.007
Chen, Xinhong; Wolfe, Damien A.; et el. (2021) Endothelial-Tropic
AAVs for Genetic Access to Whole-Brain Vasculature in Wild-Type Mouse
Strains Following Non-Invasive Systemic Delivery ; Molecular Therapy;
Vol. 29; No. 4, S1; 25; 10.1016/j.ymthe.2021.04.019
Leitch, Katherine J.; Ponce, Francesca V.; et el. (2021) The
long-distance flight behavior of Drosophila supports an agent-based
model for wind-assisted dispersal in insects ; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 118;
No. 17; Art. No. e2013342118; PMCID PMC8092610; 10.1073/pnas.2013342118
Jang, Min Jee; Coughlin, Gerard M.; et el. (2021) Deep
Tropism Profiling of Barcoded AAV Capsid and Cargo Pools in Intact
Tissue Using High-Throughput Ultrasensitive Sequential FISH ;
Molecular Therapy; Vol. 29; No. 4, S1; 142; 10.1016/j.ymthe.2021.04.019
Hori, Acacia; Grebin, Anastasiya; et el. (2021) Targeted
Gene Therapy with Engineered Systemic AAVs for the Central and
Peripheral Nervous Systems Prevents Motor Coordination Phenotypes in a
Mouse Model of Friedreich’s Ataxia ; Molecular Therapy; Vol. 29;
No. 4, S1; 125; 10.1016/j.ymthe.2021.04.019
Borsos, Máté; Chen, Xinhong; et el. (2021) Simultaneous
Detection of AAV Genome, Transcript, and Protein Localization in Intact
Cells and Tissues at High Resolution ; Molecular Therapy; Vol. 29;
No. 4, S1; 142-143; 10.1016/j.ymthe.2021.04.019
Helseth, Ashley R.; Hernandez-Martinez, Ricardo; et el. (2021) Cholinergic
neurons constitutively engage the ISR for dopamine modulation and skill
learning in mice ; Science; Vol. 372; No. 6540; Art. No. eabe1931;
PMCID PMC8457366; 10.1126/science.abe1931
Wang, Zijun; Schmidt, Fabian; et el. (2021) mRNA
vaccine-elicited antibodies to SARS-CoV-2 and circulating variants ;
Nature; Vol. 592; No. 7855; 616-622; PMCID PMC7836122; 10.1038/s41586-021-03324-6
Kropocheva, Ekaterina; Kuzmenko, Anton; et el. (2021) A
programmable pAgo nuclease with universal guide and target specificity
from the mesophilic bacterium Kurthia massiliensis ; Nucleic Acids
Research; Vol. 49; No. 7; 4054-4065; PMCID PMC8053121; 10.1093/nar/gkab182
Sidwell, Tom and Rothenberg, Ellen V. (2021) Epigenetic
Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b ;
Frontiers in Immunology; Vol. 12; Art. No. 669498; PMCID PMC8079813; 10.3389/fimmu.2021.669498
Chow, Ke-Huan K.; Budde, Mark W.; et el. (2021) Imaging
cell lineage with a synthetic digital recording system ; Science;
Vol. 372; No. 6538; Art. No. eabb3099; 10.1126/science.abb3099
Lattao, Ramona; Rangone, Hélène; et el. (2021) Mauve/LYST
limits fusion of lysosome-related organelles and promotes centrosomal
recruitment of microtubule nucleating proteins ; Developmental Cell;
Vol. 56; No. 7; 1000-1013; PMCID PMC8024676; 10.1016/j.devcel.2021.02.019
Gandhi, Shashank; Li, Yuwei; et el. (2021) A
single-plasmid approach for genome editing coupled with long-term
lineage analysis in chick embryos ; Development; Vol. 148; No. 7;
Art. No. dev193565; PMCID PMC8077534; 10.1242/dev.193565
Morais, Livia H.; Schreiber, Henry L., IV; et el. (2021) The
gut microbiota–brain axis in behaviour and brain disorders ; Nature
Reviews Microbiology; Vol. 19; No. 4; 241-255; 10.1038/s41579-020-00460-0
So, Juhoon; Kim, Minwook; et el. (2021) Attenuating
the Epidermal Growth Factor Receptor–Extracellular Signal‐Regulated
Kinase–Sex‐Determining Region Y‐Box 9 Axis Promotes Liver Progenitor
Cell‐Mediated Liver Regeneration in Zebrafish ; Hepatology; Vol. 73;
No. 4; 1494-1508; PMCID PMC7769917; 10.1002/hep.31437
Shi, Junchao; Zhang, Yunfang; et el. (2021) PANDORA-seq
expands the repertoire of regulatory small RNAs by overcoming RNA
modifications ; Nature Cell Biology; Vol. 23; No. 4; 424-436; 10.1038/s41556-021-00652-7
Hlaváč, Peter; Parker, Joseph; et el. (2021) Diversification
of myrmecophilous Clavigeritae beetles (Coleoptera: Staphylinidae:
Pselaphinae) and their radiation in New Caledonia ; Systematic
Entomology; Vol. 46; No. 2; 422-452; 10.1111/syen.12469
Sacher, Wesley D.; Chen, Fu-Der; et el. (2021) Implantable
photonic neural probes for light-sheet fluorescence brain imaging ;
Neurophotonics; Vol. 8; No. 2; Art. No. 025003; PMCID PMC8059764; 10.1117/1.NPh.8.2.025003
Arnaboldi, Valerio; Cho, Jaehyoung; et el. (2021) Wormicloud:
a new text summarization tool based on word clouds to explore the C.
elegans literature ; Database : The Journal of Biological Databases
and Curation; Vol. 2021; Art. No. baab015; PMCID PMC8011436; 10.1093/database/baab015
Mich, John K.; Graybuck, Lucas T.; et el. (2021) Functional
enhancer elements drive subclass-selective expression from mouse to
primate neocortex ; Cell Reports; Vol. 34; No. 13; Art. No. 108754;
10.1016/j.celrep.2021.108754
Jette, Claudia A.; Barnes, Christopher O.; et el. (2021) Cryo-EM
structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1
adopt a CD4-bound open conformation ; Nature Communications; Vol. 12;
Art. No. 1950; PMCID PMC8007822; 10.1038/s41467-021-21816-x
Yang, Weibing; Cortijo, Sandra; et el. (2021) Molecular
mechanism of cytokinin-activated cell division in Arabidopsis ;
Science; Vol. 371; No. 6536; 1350-1355; PMCID PMC8166333; 10.1126/science.abe2305
Mageswaran, Shrawan Kumar; Yang, Wei Yuan; et el. (2021) A
cryo–electron tomography workflow reveals protrusion-mediated shedding
on injured plasma membrane ; Science Advances; Vol. 7; No. 13; Art.
No. eabc6345; PMCID PMC7997517; 10.1126/sciadv.abc6345
Tang, Weiyi; Li, Yuwei; et el. (2021) Clonal
analysis and dynamic imaging identify multipotency of individual Gallus
gallus caudal hindbrain neural crest cells toward cardiac and enteric
fates ; Nature Communications; Vol. 12; Art. No. 1894; PMCID
PMC7994390; 10.1038/s41467-021-22146-8
Gaebler, Christian; Wang, Zijun; et el. (2021) Evolution
of antibody immunity to SARS-CoV-2 ; Nature; Vol. 591; No. 7851;
639-644; PMCID PMC8221082; 10.1038/s41586-021-03207-w
Cho, Jounhong Ryan; Chen, Xinhong; et el. (2021) Dorsal
Raphe Dopamine Neurons Signal Motivational Salience Dependent on
Internal State, Expectation, and Behavioral Context ; Journal of
Neuroscience; Vol. 41; No. 12; 2645-2655; PMCID PMC8018733; 10.1523/JNEUROSCI.2690-20.2021
VanDrisse, Chelsey M.; Lipsh-Sokolik, Rosalie; et el. (2021) Computationally
designed pyocyanin demethylase acts synergistically with tobramycin to
kill recalcitrant Pseudomonas aeruginosa biofilms ; Proceedings of
the National Academy of Sciences of the United States of America; Vol.
118; No. 12; Art. No. e2022012118; PMCID PMC8000102; 10.1073/pnas.2022012118
Dunphy, William G. (2021) TopBP1
comes into focus ; Molecular Cell; Vol. 81; No. 6; 1126-1127; 10.1016/j.molcel.2021.02.027
Piddini, Eugenia; Shalek, Alex K.; et el. (2021) How
are methodological developments enabling insights into cell behavior in
cellular communities? ; Cell Systems; Vol. 12; No. 3; 207-209; 10.1016/j.cels.2021.02.005
Wang, Siwen; Yang, Shasha; et el. (2021) Removal
of Antibiotic Resistant Bacteria and Genes by UV-Assisted
Electrochemical Oxidation on Degenerative TiO₂ Nanotube Arrays ; ACS
ES&T Engineering; Vol. 1; No. 3; 612-622; 10.1021/acsestengg.1c00011
Fatalska, Agnieszka; Stepinac, Emma; et el. (2021) The
dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate
centriole duplication ; eLife; Vol. 10; Art. No. e57241; PMCID
PMC8009671; 10.7554/elife.57241
Meirelles, Lucas A.; Perry, Elena K.; et el. (2021) Bacterial
defenses against a natural antibiotic promote collateral resilience to
clinical antibiotics ; PLoS Biology; Vol. 19; No. 3; Art.
No. e3001093; 10.1371/journal.pbio.3001093
Bashford, Luke; Rosenthal, Isabelle; et el. (2021) The
Neurophysiological Representation of Imagined Somatosensory Percepts in
Human Cortex ; Journal of Neuroscience; Vol. 41; No. 10; 2177-2185;
PMCID PMC8018772; 10.1523/jneurosci.2460-20.2021
Molè, Matteo Amitaba; Weberling, Antonia; et el. (2021) Integrin
β1 coordinates survival and morphogenesis of the embryonic lineage upon
implantation and pluripotency transition ; Cell Reports; Vol. 34;
No. 10; Art. No. 108834; PMCID PMC7966855; 10.1016/j.celrep.2021.108834
Dries, Ruben; Zhu, Qian; et el. (2021) Giotto:
a toolbox for integrative analysis and visualization of spatial
expression data ; Genome Biology; Vol. 22; Art. No. 78; 10.1186/s13059-021-02286-2
Zhang, Gang; Li, Shan; et el. (2021) A
covalent p97/VCP ATPase inhibitor can overcome resistance to CB-5083 and
NMS-873 in colorectal cancer cells ; European Journal of Medicinal
Chemistry; Vol. 213; Art. No. 113148; PMCID PMC7954469; 10.1016/j.ejmech.2020.113148
McRose, Darcy L. and Newman, Dianne K. (2021) Redox-active
antibiotics enhance phosphorus bioavailability ; Science; Vol. 371;
No. 6533; 1033-1037; PMCID PMC8051141; 10.1126/science.abd1515
Cohen, Alexander A.; Yang, Zhi; et el. (2021) Construction,
characterization, and immunization of nanoparticles that display a
diverse array of influenza HA trimers ; PLoS ONE; Vol. 16; No. 3;
Art. No. e0247963; PMCID PMC7932532; 10.1371/journal.pone.0247963
Rocchi, Francesca; Oya, Hiroyuki; et el. (2021) Common
Fronto-temporal Effective Connectivity in Humans and Monkeys ;
Neuron; Vol. 109; No. 5; 852-868; PMCID PMC7927917; 10.1016/j.neuron.2020.12.026
Yang, Yang and Arnold, Frances H. (2021) Navigating
the Unnatural Reaction Space: Directed Evolution of Heme Proteins for
Selective Carbene and Nitrene Transfer ; Accounts of Chemical
Research; Vol. 54; No. 5; 1209-1225; PMCID PMC7931446; 10.1021/acs.accounts.0c00591
Chivukula, Srinivas; Zhang, Carey Y.; et el. (2021) Neural
encoding of actual and imagined touch within human posterior parietal
cortex ; eLife; Vol. 10; Art. No. e61646; PMCID PMC7924956; 10.7554/eLife.61646
Needham, Brittany D.; Adame, Mark D.; et el. (2021) Plasma
and Fecal Metabolite Profiles in Autism Spectrum Disorder ;
Biological Psychiatry; Vol. 89; No. 5; 451-462; PMCID PMC7867605; 10.1016/j.biopsych.2020.09.025
Bain, William G.; Peñaloza, Hernán F.; et el. (2021) Lower
Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an
Inflammatory Phenotype ; CHEST; Vol. 159; No. 3; 963-966; PMCID
PMC7671922; 10.1016/j.chest.2020.10.083
Rothenberg, Ellen V. (2021) Single-cell
insights into the hematopoietic generation of T-lymphocyte precursors in
mouse and human ; Experimental Hematology; Vol. 95; 1-12; PMCID
PMC8018899; 10.1016/j.exphem.2020.12.005
Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2021) How
transcription factors drive choice of the T cell fate ; Nature
Reviews. Immunology; Vol. 21; No. 3; 162-176; 10.1038/s41577-020-00426-6
Chai, C. M.; Wen, C.; et el. (2021) Discovery
of a highly-conserved behavioral role for an interneuron neuropeptide
receptor ; Integrative and Comparative Biology; Vol. 61; No. S1;
E124-E125; 10.1093/icb/icab001
Brovero, Savannah G.; Fortier, Julia C.; et el. (2021) Investigation
of Drosophila fruitless neurons that express Dpr/DIP cell adhesion
molecules ; eLife; Vol. 10; Art. No. e63101; 10.7554/eLife.63101
Refahi, Yassin; Zardilis, Argyris; et el. (2021) A
multiscale analysis of early flower development in Arabidopsis provides
an integrated view of molecular regulation and growth control ;
Developmental Cell; Vol. 56; No. 4; 540-556; PMCID PMC8519405; 10.1016/j.devcel.2021.01.019
Oberhofer, Georg; Ivy, Tobin; et el. (2021) Split
versions of Cleave and Rescue selfish genetic elements for measured self
limiting gene drive ; PLoS Genetics; Vol. 17; No. 2; Art.
No. e1009385; 10.1371/journal.pgen.1009385
Ashaber, Mária; Tomina, Yusuke; et el. (2021) Anatomy
and activity patterns in a multifunctional motor neuron and its
surrounding circuits ; eLife; Vol. 10; Art. No. e61881; 10.7554/eLife.61881
Vastola, John J.; Gorin, Gennady; et el. (2021) Learning
the Dynamics of Bursty Transcription and Splicing using Ultra-Fast
Parameter Inference and New Analytical Solutions of the Chemical Master
Equation ; Biophysical Journal; Vol. 120; No. 3; 135A; 10.1016/j.bpj.2020.11.1018
Gorin, Gennady and Pachter, Lior (2021) Analysis
of Length Biases in Single-Cell RNA Sequencing of Unspliced mRNA by
Markov Modeling ; Biophysical Journal; Vol. 120; No. 3; 81A; 10.1016/j.bpj.2020.11.706
Esswein, Shannon R. and Bjorkman, Pamela J. (2021) Structural
Basis for Germline Antibody Binding to Zika Virus Envelope Domain
III ; Biophysical Journal; Vol. 120; No. 3; 276A-277A; 10.1016/j.bpj.2020.11.1760
Galstyan, Vahe; Suresh, Pooja; et el. (2021) Understanding
the Mechanisms that Give Rise to the Mammalian Spindle’s Response to
Force using Theory and Microneedle Manipulation ; Biophysical
Journal; Vol. 120; No. 3; 347A; 10.1016/j.bpj.2020.11.2158
Srivastava, Vasudha; Hu, Jennifer L.; et el. (2021) Identifying
Enthalpic Barriers to Entropically-Driven Structural Disruption in
Breast Cancers ; Biophysical Journal; Vol. 120; No. 3; 196A; 10.1016/j.bpj.2020.11.1347
Cohen, Alexander A.; Gnanapragasam, Priyanthi N. P.; et el. (2021)
Mosaic
nanoparticles elicit cross-reactive immune responses to zoonotic
coronaviruses in mice ; Science; Vol. 371; No. 6530; 735-741; PMCID
PMC7928838; 10.1126/science.abf6840
Jensen, Grant (2021) Imaging
Biopolymers In Vivo Directly with Cryo-ET: Trim5 Nets and IRE-1
Helices ; Biophysical Journal; Vol. 120; No. 3, Supp. 1; 1a; 10.1016/j.bpj.2020.11.046
Takei, Yodai; Yun, Jina; et el. (2021) Integrated
spatial genomics reveals global architecture of single nuclei ;
Nature; Vol. 590; No. 7845; 344-350; PMCID PMC7878433; 10.1038/s41586-020-03126-2
Klionsky, Daniel J.; Abdel-Aziz, Amal Kamal; et el. (2021) Guidelines
for the use and interpretation of assays for monitoring autophagy (4th
edition) ; Autophagy; Vol. 17; No. 1; 1-382; 10.1080/15548627.2020.1797280
Amadei, Gianluca; Lau, Kasey Y. C.; et el. (2021) Inducible
Stem-Cell-Derived Embryos Capture Mouse Morphogenetic Events
In Vitro ; Developmental Cell; Vol. 56; No. 3; 366-382; PMCID
PMC7883308; 10.1016/j.devcel.2020.12.004
Singhal, Vipul; Tuza, Zoltan A.; et el. (2021) A
MATLAB toolbox for modeling genetic circuits in cell-free systems ;
Synthetic Biology; Vol. 6; No. 1; Art. No. ysab007; PMCID PMC8102020; 10.1093/synbio/ysab007
Hutchins, Erica J.; Piacentino, Michael L.; et el. (2021) Transcriptomic
Identification of Draxin-Responsive Targets During Cranial Neural Crest
EMT ; Frontiers in Physiology; Vol. 12; Art. No. 624037; PMCID
PMC7886793; 10.3389/fphys.2021.624037
Sozen, Berna; Demir, Necdet; et el. (2021) BMP
signalling is required for extra-embryonic ectoderm development during
pre-to-post-implantation transition of the mouse embryo ;
Developmental Biology; Vol. 470; 84-94; PMCID PMC8219371; 10.1016/j.ydbio.2020.11.005
Nguyen, Lam T.; Oikonomou, Catherine M.; et el. (2021) Simulations
of Proposed Mechanisms of FtsZ-Driven Cell Constriction ; Journal of
Bacteriology; Vol. 203; No. 3; Art. No. e00576-20; PMCID PMC7886793; 10.1128/JB.00576-20
Metcalfe, Kyle S.; Murali, Ranjani; et el. (2021) Experimentally-validated
correlation analysis reveals new anaerobic methane oxidation
partnerships with consortium-level heterogeneity in diazotrophy ;
ISME Journal; Vol. 15; No. 2; 377-396; PMCID PMC8027057; 10.1038/s41396-020-00757-1
Nicolas, William J.; Ghosal, Debnath; et el. (2021) Structure
of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton
by Electron Cryotomography ; Journal of Bacteriology; Vol. 203;
No. 3; Art. No. e00371-20; PMCID PMC7811197; 10.1128/JB.00371-20
Saif-ur-Rehman, Muhammad; Ali, Omair; et el. (2021) SpikeDeep-classifier:
a deep-learning based fully automatic offline spike sorting
algorithm ; Journal of Neural Engineering; Vol. 18; No. 1; Art.
No. 016009; 10.1088/1741-2552/abc8d4
Liao, Hsin-I; Kashino, Makio; et el. (2021) Attractiveness
in the Eyes: A Possibility of Positive Loop between Transient Pupil
Constriction and Facial Attraction ; Journal of Cognitive
Neuroscience; Vol. 33; No. 2; 315-340; 10.1162/jocn_a_01649
Niklasson, Camilla U.; Fredlund, Elina; et el. (2021) Hypoxia
inducible factor‐2α importance for migration, proliferation, and
self‐renewal of trunk neural crest cells ; Developmental Dynamics;
Vol. 250; No. 2; 191-236; 10.1002/dvdy.253
Hartmann, Felix J.; Mrdjen, Dunja; et el. (2021) Single-cell
metabolic profiling of human cytotoxic T cells ; Nature
Biotechnology; Vol. 39; No. 2; 186-197; 10.1038/s41587-020-0651-8
Shin, Boyoung; Hosokawa, Hiroyuki; et el. (2021) Runx1
and Runx3 drive progenitor to T-lineage transcriptome conversion in
mouse T cell commitment via dynamic genomic site switching ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 4; Art. No. e2019655118; PMCID PMC7848575; 10.1073/pnas.2019655118
Adashev, Vladimir E.; Kotov, Alexei A.; et el. (2021) Stellate
Genes and the piRNA Pathway in Speciation and Reproductive Isolation of
Drosophila melanogaster ; Frontiers in Genetics; Vol. 11; Art.
No. 610665; PMCID PMC7874207; 10.3389/fgene.2020.610665
Chiu, Hui; Hoopfer, Eric D.; et el. (2021) A
circuit logic for sexually shared and dimorphic aggressive behaviors in
Drosophila ; Cell; Vol. 184; No. 2; 507-520; PMCID PMC7856078; 10.1016/j.cell.2020.11.048
Weberling, Antonia and Zernicka-Goetz, Magdalena (2021) Trophectoderm
mechanics direct epiblast shape upon embryo implantation ; Cell
Reports; Vol. 34; No. 3; Art. No. 108655; PMCID PMC7816124; 10.1016/j.celrep.2020.108655
Morrison, Muir; Razo-Mejia, Manuel; et el. (2021) Reconciling
kinetic and thermodynamic models of bacterial transcription ; PLOS
Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID
PMC7845990; 10.1371/journal.pcbi.1008572
Wang, Ruohan; Mishra, Prashant; et el. (2021) Identification
of new OPA1 cleavage site reveals that short isoforms regulate
mitochondrial fusion ; Molecular Biology of the Cell; Vol. 32; No. 2;
157-168; PMCID PMC8120690; 10.1091/mbc.e20-09-0605
Sim, Min Sub; Skennerton, Connor T.; et el. (2021) Physiological,
genomic, and sulfur isotopic characterization of methanol metabolism by
Desulfovibrio carbinolicus ; PLoS ONE; Vol. 16; No. 1; Art.
No. e0245069; 10.1371/journal.pone.0245069
Wong, Wan-Rong; Maher, Shayda; et el. (2021) Conserved
missense variant in ALDH1A3 ortholog impairs fecundity in C.
elegans ; microPublication Biology; Art. No. 000357; 10.17912/micropub.biology.000357
Karigo, Tomomi; Kennedy, Ann; et el. (2021) Distinct
hypothalamic control of same- and opposite-sex mounting behaviour in
mice ; Nature; Vol. 589; No. 7841; 258-263; 10.1038/s41586-020-2995-0
Olariu, Victor; Yui, Mary A.; et el. (2021) Multi-scale
Dynamical Modeling of T Cell Development from an Early Thymic Progenitor
State to Lineage Commitment ; Cell Reports; Vol. 34; No. 2; Art.
No. 108622; PMCID PMC7943435; 10.1016/j.celrep.2020.108622
Yu, Timothy C.; Liu, Winnie L.; et el. (2021) Multiplexed
characterization of rationally designed promoter architectures
deconstructs combinatorial logic for IPTG-inducible systems ; Nature
Communications; Vol. 12; Art. No. 325; PMCID PMC7804116; 10.1038/s41467-020-20094-3
Shin, Chun-Shik; Meng, Shuxia; et el. (2021) LONP1
and mtHSP70 cooperate to promote mitochondrial protein folding ;
Nature Communications; Vol. 12; Art. No. 265; PMCID PMC7801493; 10.1038/s41467-020-20597-z
Carbon, Seth; Douglass, Eric; et el. (2021) Gene
Ontology resource: enriching a GOld mine ; Nucleic Acids Research;
Vol. 49; No. D1; D325-D334; PMCID PMC7779012; 10.1093/nar/gkaa1113
Watkins-Dulaney, Ella; Straathof, Sabine; et el. (2021) Tryptophan
Synthase: Biocatalyst Extraordinaire ; ChemBioChem; Vol. 22; No. 1;
5-16; PMCID PMC7935429; 10.1002/cbic.202000379
Kato, Mihoko; Kolotuev, Irina; et el. (2021) Extrasynaptic
acetylcholine signaling through a muscarinic receptor regulates cell
migration ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 118; No. 1; Art. No. e1904338118; PMCID
PMC7817160; 10.1073/pnas.1904338118
Kato, Mitsuo; Abdollahi, Maryam; et el. (2021) miR-379
deletion ameliorates features of diabetic kidney disease by enhancing
adaptive mitophagy via FIS1 ; Communications Biology; Vol. 4; Art.
No. 30; PMCID PMC7782535; 10.1038/s42003-020-01516-w
LaPelusa, Michael; Donoviel, Dorit; et el. (2021) Microbiome
for Mars: surveying microbiome connections to healthcare with
implications for long-duration human spaceflight, virtual workshop, July
13, 2020 ; Microbiome; Vol. 9; Art. No. 2; PMCID PMC7781430; 10.1186/s40168-020-00951-5
Wang, Feng; Moen, Derek R.; et el. (2021) Enzyme
Replacement Therapy for Mucopolysaccharidosis IIID using Recombinant
Human α-N-Acetylglucosamine-6-Sulfatase in Neonatal Mice ; Molecular
Pharmaceutics; Vol. 18; No. 1; 214-227; PMCID PMC8362844; 10.1021/acs.molpharmaceut.0c00831
Bárcena, Montserrat; Barnes, Christopher O.; et el. (2021) Structural
biology in the fight against COVID-19 ; Nature Structural &
Molecular Biology; Vol. 28; No. 1; 2-7; 10.1038/s41594-020-00544-8
Bannon, Dylan; Moen, Erick; et el. (2021) DeepCell
Kiosk: scaling deep learning–enabled cellular image analysis with
Kubernetes ; Nature Methods; Vol. 18; No. 1; 43-45; 10.1038/s41592-020-01023-0
Rothenberg, Ellen V. and Göttgens, Berthold (2021) How
haematopoiesis research became a fertile ground for regulatory network
biology as pioneered by Eric Davidson ; Current Opinion in
Hematology; Vol. 28; No. 1; 1-10; PMCID PMC7755131; 10.1097/moh.0000000000000628
Mickol, Rebecca L.; Louyakis, Artemis S.; et el. (2021) Draft
Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum
mesophilum Strain ECR ; Microbiology Resource Announcements; Vol. 10;
No. 1; Art. No. e01302-20; 10.1128/mra.01302-20
Irizarry, Jihyun and Stathopoulos, Angelike (2021) Dynamic
patterning by morphogens illuminated by cis-regulatory studies ;
Development; Vol. 148; No. 2; Art. No. dev196113; PMCID PMC7847269; 10.1242/dev.196113
Hay, Bruce A.; Oberhofer, Georg; et el. (2021) Engineering
the Composition and Fate of Wild Populations with Gene Drive ; Annual
Review of Entomology; Vol. 66; 407-434; 10.1146/annurev-ento-020117-043154
Galstyan, Vahe; Husain, Kabir; et el. (2020) Proofreading
through spatial gradients ; eLife; Vol. 9; Art. No. e60415; 10.7554/eLife.60415
Unger, Elizabeth K.; Keller, Jacob P.; et el. (2020) Directed
Evolution of a Selective and Sensitive Serotonin Sensor via Machine
Learning ; Cell; Vol. 183; No. 7; 1986-2002; PMCID PMC8025677; 10.1016/j.cell.2020.11.040
Lee, Daniel A.; Oikonomou, Grigorios; et el. (2020) Neuropeptide
VF neurons promote sleep via the serotonergic raphe ; eLife; Vol. 9;
Art. No. e54491; PMCID PMC7748413; 10.7554/eLife.54491
Lisitskaya, Lidia; Petushkov, Ivan; et el. (2020) Recognition
of double-stranded DNA by the Rhodobacter sphaeroides Argonaute
protein ; Biochemical and Biophysical Research Communications; Vol.
533; No. 4; 1484-1489; 10.1016/j.bbrc.2020.10.051
Parker, Joseph and Struhl, Gary (2020) Control
of Drosophila wing size by morphogen range and hormonal gating ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 50; 31935-31944; 10.1073/pnas.2018196117
Jafari, Matiar; Aflalo, Tyson; et el. (2020) The
human primary somatosensory cortex encodes imagined movement in the
absence of sensory information ; Communications Biology; Vol. 3;
No. 1; Art. No. 757; 10.1038/s42003-020-01484-1
Zhu, Meng; Cornwall-Scoones, Jake; et el. (2020) Developmental
clock and mechanism of de novo polarization of the mouse embryo ;
Science; Vol. 370; No. 6522; Art. No. eabd2703; PMCID PMC8210885; 10.1126/science.abd2703
Booeshaghi, A. Sina; Lubock, Nathan B.; et el. (2020) Reliable
and accurate diagnostics from highly multiplexed sequencing assays ;
Scientific Reports; Vol. 10; Art. No. 21759; PMCID PMC7730459; 10.1038/s41598-020-78942-7
Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Principles
of Self-Organization of the Mammalian Embryo ; Cell; Vol. 183; No. 6;
1467-1478; PMCID PMC8212876; 10.1016/j.cell.2020.11.003
Zhang, Xianjun; Carter, Stephen D.; et el. (2020) Visualizing
insulin vesicle neighborhoods in β cells by cryo-electron
tomography ; Science Advances; Vol. 6; No. 50; Art. No. eabc8258;
PMCID PMC7725471; 10.1126/sciadv.abc8258
Vu, Tri T. M.; Mitchell, Dylan C.; et el. (2020) The
Arg/N-degron pathway targets transcription factors and regulates
specific genes ; Proceedings of the National Academy of Sciences of
the United States of America; Vol. 117; No. 49; 31094-31104; PMCID
PMC7733807; 10.1073/pnas.2020124117
Linsky, Thomas W.; Vergara, Renan; et el. (2020) De
novo design of potent and resilient hACE2 decoys to neutralize
SARS-CoV-2 ; Science; Vol. 370; No. 6521; 1208-1214; PMCID
PMC7920261; 10.1126/science.abe0075
Pool, Allan-Hermann; Wang, Tongtong; et el. (2020) The
cellular basis of distinct thirst modalities ; Nature; Vol. 588;
No. 7836; 112-117; PMCID PMC7718410; 10.1038/s41586-020-2821-8
Karman, Zoltan; Rethi-Nagy, Zsuzsanna; et el. (2020) Novel
perspectives of target-binding by the evolutionarily conserved PP4
phosphatase ; Open Biology; Vol. 10; No. 12; Art. No. 200343; PMCID
PMC7776573; 10.1098/rsob.200343
Hung, Shao-Min; Wu, Daw-An; et el. (2020) Implicit
response incompatibility slowed down asymptomatic individuals with
Alzheimer’s disease pathology ; Alzheimer’s & Dementia; Vol. 16;
No. S4, pt 1; Art. No. e044884; 10.1002/alz.044884
Cabeen, Ryan P.; Glass, Laura; et el. (2020) The
connections of the insular VEN area in great apes: A
histologically-guided ex vivo diffusion tractography study ; Progress
in Neurobiology; Vol. 195; Art. No. 101941; PMCID PMC7806049; 10.1016/j.pneurobio.2020.101941
Tsao, Doris Y. (2020) Does
finding a face cell tell us anything much at all? ; Progress in
Neurobiology; Vol. 195; Art. No. 101925; 10.1016/j.pneurobio.2020.101925
Cai, L. (2020) Transcriptome-Scale
Super-Resolved Imaging in Tissues by RNA SeqFISH ; European Journal
of Human Genetics; Vol. 28; No. S1; 10; 10.1038/s41431-020-00740-6
Needham, Brittany D.; Kaddurah-Daouk, Rima; et el. (2020) Gut
microbial molecules in behavioural and neurodegenerative conditions ;
Nature Reviews Neuroscience; Vol. 21; No. 12; 717-731; 10.1038/s41583-020-00381-0
Garcez, Aguinaldo S.; Kaplan, Mohammed; et el. (2020) Effects
of antimicrobial photodynamic therapy on antibiotic-resistant
Escherichia coli ; Photodiagnosis and Photodynamic Therapy; Vol. 32;
Art. No. 102029; PMCID PMC7744317; 10.1016/j.pdpdt.2020.102029
Hesse, Janis K. and Tsao, Doris Y. (2020) The
macaque face patch system: a turtle’s underbelly for the brain ;
Nature Reviews. Neuroscience; Vol. 21; No. 12; 695-716; 10.1038/s41583-020-00393-w
Allman, John (2020) Charlie
and Joyce at the Intersection of Science and Art ; Progress in
Neurobiology; Vol. 195; Art. No. 101922; 10.1016/j.pneurobio.2020.101922
Svensson, Valentine; da Veiga Beltrame, Eduardo; et el. (2020) A
curated database reveals trends in single cell transcriptomics ;
Database: The Journal of Biological Databases and Curation; Vol. 2020;
Art. No. baaa073; PMCID PMC7698659; 10.1093/database/baaa073
Kuzmenko, Anton; Oguienko, Anastasiya; et el. (2020) DNA
targeting and interference by a bacterial Argonaute nuclease ;
Nature; Vol. 587; No. 7835; 632-637; 10.1038/s41586-020-2605-1
Dobreva, Tatyana; Brown, David; et el. (2020) Single
cell profiling of capillary blood enables out of clinic human immunity
studies ; Scientific Reports; Vol. 10; Art. No. 20540; PMCID
PMC7688970; 10.1038/s41598-020-77073-3
Pluchinsky, Adam J.; Wackelin, Daniel J.; et el. (2020) High
Throughput Screening with SAMDI Mass Spectrometry for Directed
Evolution ; Journal of the American Chemical Society; Vol. 142;
No. 47; 19804-19808; 10.1021/jacs.0c07828
Banerjee, Abhik K.; Blanco, Mario R.; et el. (2020) SARS-CoV-2
disrupts splicing, translation, and protein trafficking to suppress host
defenses ; Cell; Vol. 183; No. 5; 1325-1339; PMCID PMC7543886; 10.1016/j.cell.2020.10.004
Carter, Stephen D.; Mamede, João I.; et el. (2020) Correlated
cryogenic fluorescence microscopy and electron cryo-tomography shows
that exogenous TRIM5α can form hexagonal lattices or autophagy
aggregates in vivo ; Proceedings of the National Academy of Sciences
of the United States of America; Vol. 117; No. 47; 29702-29711; PMCID
PMC7703684; 10.1073/pnas.1920323117
Adachi, Yoshihiro; Kato, Takashi; et el. (2020) Drp1
Tubulates the ER in a GTPase-Independent Manner ; Molecular Cell;
Vol. 80; No. 4; 621-632; PMCID PMC7680448; 10.1016/j.molcel.2020.10.013
Mullin, Sean W.; Wanger, Greg; et el. (2020) Patterns
of in situ Mineral Colonization by Microorganisms in a ~60°C Deep
Continental Subsurface Aquifer ; Frontiers in Microbiology; Vol. 11;
Art. No. 536535; PMCID PMC7711152; 10.3389/fmicb.2020.536535
Holman, Elizabeth A.; Fang, Yuan-Sheng; et el. (2020) Autonomous
adaptive data acquisition for scanning hyperspectral imaging ;
Communications Biology; Vol. 3; No. 1; Art. No. 684; 10.1038/s42003-020-01385-3
Chen, Sisi; Rivaud, Paul; et el. (2020) Dissecting
heterogeneous cell populations across drug and disease conditions with
PopAlign ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 46; 28784-28794; PMCID
PMC7682438; 10.1073/pnas.2005990117
Bowren, Mark, Jr.; Adolphs, Ralph; et el. (2020) Multivariate
Lesion-Behavior Mapping of General Cognitive Ability and Its
Psychometric Constituents ; Journal of Neuroscience; Vol. 40; No. 46;
8924-8937; PMCID PMC7659456; 10.1523/jneurosci.1415-20.2020
Hesse, Janis Karan and Tsao, Doris Y. (2020) A
new no-report paradigm reveals that face cells encode both consciously
perceived and suppressed stimuli ; eLife; Vol. 9; Art. No. e58360;
PMCID PMC7676863; 10.7554/elife.58360
Luo, Yicheng; Fefelova, Elena; et el. (2020) Repression
of interrupted and intact rDNA by the SUMO pathway in Drosophila
melanogaster ; eLife; Vol. 2020; No. 9; Art. No. e52416; PMCID
PMC7676866; 10.7554/eLife.52416
Rix, Gordon; Watkins-Dulaney, Ella J.; et el. (2020) Scalable
continuous evolution for the generation of diverse enzyme variants
encompassing promiscuous activities ; Nature Communications; Vol. 11;
Art. No. 5644; PMCID PMC7648111; 10.1038/s41467-020-19539-6
Pandya-Jones, Amy; Markaki, Yolanda; et el. (2020) A
protein assembly mediates Xist localization and gene silencing ;
Nature; Vol. 587; No. 7832; 145-151; PMCID PMC7644664; 10.1038/s41586-020-2703-0
Mehrab, Zakaria; Mobin, Jaiaid; et el. (2020) A
faster implementation of association mapping from k-mers ;
Bio-protocol; Vol. 10; No. 21; Art. No. e3815; 10.21769/bioprotoc.3815
Li, Yuwei; Gonzalez, Walter G.; et el. (2020) Macropinocytosis-mediated
membrane recycling drives neural crest migration by delivering F-actin
to the lamellipodium ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 44; 27400-27411;
PMCID PMC7959501; 10.1073/pnas.2007229117
Stundl, Jan; Pospisilova, Anna; et el. (2020) Migratory
patterns and evolutionary plasticity of cranial neural crest cells in
ray-finned fishes ; Developmental Biology; Vol. 467; No. 1-2; 14-29;
10.1016/j.ydbio.2020.08.007
Fatalska, Agnieszka; Dzhindzhev, Nikola S.; et el. (2020) Interaction
interface in the C-terminal parts of centriole proteins Sas6 and
Ana2 ; Open Biology; Vol. 10; No. 11; Art. No. 200221; PMCID
PMC7729032; 10.1098/rsob.200221
Dubois, Julien; Eberhardt, Frederick; et el. (2020) Personality
beyond taxonomy ; Nature Human Behaviour; Vol. 4; No. 11; 1110-1117;
10.1038/s41562-020-00989-3
Grant, Stephen and Lester, Henry A. (2020) Proteins
for increased surface expression of the α6β4 nicotinic acetylcholine
receptor: Nothing but good news? ; Journal of Clinical Investigation;
Vol. 130; No. 11; 5685-5687; PMCID PMC7598034; 10.1172/jci143197
Kennedy, Ann; Kunwar, Prabhat S.; et el. (2020) Stimulus-specific
hypothalamic encoding of a persistent defensive state ; Nature; Vol.
586; No. 7831; 730-734; PMCID PMC7606611; 10.1038/s41586-020-2728-4
He, Yun; Shi, Junhui; et el. (2020) Label-free
imaging of lipid-rich biological tissues by mid-infrared photoacoustic
microscopy ; Journal of Biomedical Optics; Vol. 25; No. 10; Art.
No. 106506; 10.1117/1.jbo.25.10.106506
Aflalo, T.; Zhang, C. Y.; et el. (2020) A
shared neural substrate for action verbs and observed actions in human
posterior parietal cortex ; Science Advances; Vol. 6; No. 43; Art.
No. eabb3984; 10.1126/sciadv.abb3984
Wang, Zijun; Barnes, Christopher O.; et el. (2020) A
broadly neutralizing macaque monoclonal antibody against the HIV-1
V3-Glycan patch ; eLife; Vol. 9; Art. No. e61991; PMCID PMC7577740;
10.7554/eLife.61991
Fornace, Mark E.; Porubsky, Nicholas J.; et el. (2020) A
Unified Dynamic Programming Framework for the Analysis of Interacting
Nucleic Acid Strands: Enhanced Models, Scalability, and Speed ; ACS
Synthetic Biology; Vol. 9; No. 10; 2665-2678; 10.1021/acssynbio.9b00523
Le, Henry H.; Wrobel, Chester J. J.; et el. (2020) Modular
metabolite assembly in Caenorhabditis elegans depends on
carboxylesterases and formation of lysosome-related organelles ;
eLife; Vol. 2020; No. 9; Art. No. e61886; PMCID PMC7641594; 10.7554/eLife.61886
Dunham, Noah P. and Arnold, Frances H. (2020) Nature’s
Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent
Oxygenases ; ACS Catalysis; Vol. 10; No. 20; 12239-12255; PMCID
PMC7710332; 10.1021/acscatal.0c03606
Tang, Weiyi and Bronner, Marianne E. (2020) Neural
crest lineage analysis: from past to future trajectory ; Development;
Vol. 147; No. 20; Art. No. dev193193; PMCID PMC7595686; 10.1242/dev.193193
Vangala, Pranitha; Murphy, Rachel; et el. (2020) High-Resolution
Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen
Detection ; Molecular Cell; Vol. 80; No. 2; 359-373; PMCID
PMC7572724; 10.1016/j.molcel.2020.09.005
Badimon, Ana; Strasburger, Hayley J.; et el. (2020) Negative
feedback control of neuronal activity by microglia ; Nature; Vol.
586; No. 7829; 417-423; 10.1038/s41586-020-2777-8
Moreaux, Laurent C.; Yatsenko, Dimitri; et el. (2020) Integrated
Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit
Activity —at Depth and in Real Time ; Neuron; Vol. 108; No. 1; 66-92;
PMCID PMC8061790; 10.1016/j.neuron.2020.09.043
Stagkourakis, Stefanos; Spigolon, Giada; et el. (2020) Experience-dependent
plasticity in an innate social behavior is mediated by hypothalamic
LTP ; Proceedings of the National Academy of Sciences of the United
States of America; Vol. 117; No. 41; 25789-25799; PMCID PMC7568289; 10.1073/pnas.2011782117
Weaver, Sara J.; Ortega, Davi R.; et el. (2020) CryoEM
structure of the type IVa pilus secretin required for natural competence
in Vibrio cholerae ; Nature Communications; Vol. 11; Art. No. 5080;
PMCID PMC7545093; 10.1038/s41467-020-18866-y
Treuner-Lange, Anke; Chang, Yi-Wei; et el. (2020) PilY1
and minor pilins form a complex priming the type IVa pilus in Myxococcus
xanthus ; Nature Communications; Vol. 11; Art. No. 5054; PMCID
PMC7541494; 10.1038/s41467-020-18803-z
Dahlstrom, Kurt M.; McRose, Darcy L.; et el. (2020) Keystone
metabolites of crop rhizosphere microbiomes ; Current Biology; Vol.
30; No. 19; R1131-R1137; PMCID PMC8059773; 10.1016/j.cub.2020.08.005
Romero-Wolf, Maile; Shin, Boyoung; et el. (2020) Notch2
complements Notch1 to mediate inductive signaling that initiates early T
cell development ; Journal of Cell Biology; Vol. 219; No. 10; Art.
No. e202005093; PMCID PMC7659720; 10.1083/jcb.202005093
Lynch, Cian J.; Bernad, Raquel; et el. (2020) Global
hyperactivation of enhancers stabilizes human and mouse naive
pluripotency through inhibition of CDK8/19 Mediator kinases ; Nature
Cell Biology; Vol. 22; No. 10; 1223-1238; 10.1038/s41556-020-0573-1
Piacentino, Michael L.; Li, Yuwei; et el. (2020) Epithelial-to-mesenchymal
transition and different migration strategies as viewed from the neural
crest ; Current Opinion in Cell Biology; Vol. 66; 43-50; 10.1016/j.ceb.2020.05.001
Sun, Simo; Shinya, Ryoji; et el. (2020) Telomere-to-Telomere
Genome Assembly of Bursaphelenchus okinawaensis Strain SH1 ;
Microbiology Resource Announcements; Vol. 9; No. 43; Art. No. e01000-20;
PMCID PMC7585841; 10.1128/mra.01000-20
Court, Robert; Namiki, Shigehiro; et el. (2020) A
Systematic Nomenclature for the Drosophila Ventral Nerve Cord ;
Neuron; Vol. 107; No. 6; 1071-1079; PMCID PMC7611823; 10.1016/j.neuron.2020.08.005
Gandhi, Shashank; Hutchins, Erica J.; et el. (2020) Bimodal
function of chromatin remodeler Hmga1 in neural crest induction and
Wnt-dependent emigration ; eLife; Vol. 2020; No. 9; Art. No. e57779;
PMCID PMC7591248; 10.7554/elife.57779
Kumagai, Akiko and Dunphy, William G. (2020) Binding
of the Treslin-MTBP Complex to Specific Regions of the Human Genome
Promotes the Initiation of DNA Replication ; Cell Reports; Vol. 32;
No. 12; Art. No. 108178; PMCID PMC7523632; 10.1016/j.celrep.2020.108178
Parker, Joseph and Rabeling, Christian (2020) Evolution:
Shape-Shifting Social Parasites ; Current Biology; Vol. 30; No. 18;
R1049-R1051; 10.1016/j.cub.2020.07.010
Ireland, William T.; Beeler, Suzannah M.; et el. (2020) Deciphering
the regulatory genome of Escherichia coli, one hundred promoters at a
time ; eLife; Vol. 2020; No. 9; Art. No. e55308; PMCID PMC7567609; 10.7554/eLife.55308
Abbott, Larry F.; Bock, Davi D.; et el. (2020) The
Mind of a Mouse ; Cell; Vol. 182; No. 6; 1372-1376; 10.1016/j.cell.2020.08.010
Dar, Daniel; Thomashow, Linda S.; et el. (2020) Global
landscape of phenazine biosynthesis and biodegradation reveals
species-specific colonization patterns in agricultural soils and crop
microbiomes ; eLife; Vol. 2020; No. 9; Art. No. e59726; 10.7554/eLife.59726
Yun, Kyongsik; Bhattacharya, Joydeep; et el. (2020) Causally
Linking Neural Dominance to Perceptual Dominance in a Multisensory
Conflict ; Neuroreport; Vol. 31; No. 13; 991-998; 10.1097/WNR.0000000000001505
Panda, Pallavi; Kovacs, Levente; et el. (2020) Tissue
specific requirement of Drosophila Rcd4 for centriole duplication and
ciliogenesis ; Journal of Cell Biology; Vol. 219; No. 8; Art.
No. e201912154; PMCID PMC7401805; 10.1083/jcb.201912154
Li, Ya-tang; Turan, Zeynep; et el. (2020) Functional
Architecture of Motion Direction in the Mouse Superior Colliculus ;
Current Biology; Vol. 30; No. 17; 3304-3315; PMCID PMC8221388; 10.1016/j.cub.2020.06.023
Han, Han; Geng, Yuan; et el. (2020) Overlapping
and Distinct Roles of HAM Family Genes in Arabidopsis Shoot
Meristems ; Frontiers in Plant Science; Vol. 11; Art. No. 541968;
PMCID PMC7498855; 10.3389/fpls.2020.541968
Wang, Xun and Rothenberg, Ellen V. (2020) Illuminating
the core of adaptive immunity—how the regulatory genome controls Rag
chromatin dynamics ; Science Immunology; Vol. 5; No. 51; Art.
No. eabd6427; 10.1126/sciimmunol.abd6427
Bähr, Susanne; Brinkmann-Chen, Sabine; et el. (2020) Selective
Enzymatic Oxidation of Silanes to Silanols ; Angewandte Chemie
International Edition; Vol. 59; No. 36; 15507-15511; PMCID PMC7511438;
10.1002/anie.202002861
Wang, Xiao-Jing; Hu, Hailan; et el. (2020) Computational
neuroscience: a frontier of the 21st century ; National Science
Review; Vol. 7; No. 9; 1418-1422; 10.1093/nsr/nwaa129
Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2020) Starting
life in space ; National Science Review; Vol. 7; No. 9; 1447-1448; 10.1093/nsr/nwaa102
Baetica, Ania-Ariadna; Leong, Yoke Peng; et el. (2020) Guidelines
for designing the antithetic feedback motif ; Physical Biology; Vol.
17; No. 5; Art. No. 055002; 10.1088/1478-3975/ab8454
Cabeen, Ryan P.; Allman, John M.; et el. (2020) THC
Exposure is Reflected in the Microstructure of the Cerebral Cortex and
Amygdala of Young Adults ; Cerebral Cortex; Vol. 30; No. 9;
4949-4963; PMCID PMC7947183; 10.1093/cercor/bhaa087
Baiocchi, Tiffany; Anesko, Kyle; et el. (2020) Signaling
by AWC Olfactory Neurons Is Necessary for Caenorhabditis elegans’
Response to Prenol, an Odor Associated with Nematode-Infected
Insects ; Genetics; Vol. 216; No. 1; 145-157; PMCID PMC7463287; 10.1534/genetics.120.303280
Ninova, Maria and Fejes Tóth, Katalin (2020) New
players on the piRNA field ; Nature Structural & Molecular
Biology; Vol. 27; No. 9; 771-779; 10.1038/s41594-020-0484-7
Wu, Zachary; Yang, Kevin K.; et el. (2020) Signal
Peptides Generated by Attention-Based Neural Networks ; ACS Synthetic
Biology; Vol. 9; No. 8; 2154-2161; 10.1021/acssynbio.0c00219
Wojtowicz, Woj M.; Vielmetter, Jost; et el. (2020) A
Human IgSF Cell-Surface Interactome Reveals a Complex Network of
Protein-Protein Interactions ; Cell; Vol. 182; No. 4; 1027-1043;
PMCID PMC7440162; 10.1016/j.cell.2020.07.025
Barnes, Christopher O.; West, Anthony P., Jr.; et el. (2020) Structures
of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and
Recurrent Features of Antibodies ; Cell; Vol. 182; No. 4; 828-842;
PMCID PMC7311918; 10.1016/j.cell.2020.06.025
Robbiani, Davide F.; Gaebler, Christian; et el. (2020) Convergent
Antibody Responses to SARS-CoV-2 Infection in Convalescent
Individuals ; Nature; Vol. 584; No. 7821; 437-442; PMCID PMC7263513;
10.1038/s41586-020-2456-9
Saunders, Scott H.; Tse, Edmund C. M.; et el. (2020) Extracellular
DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in
Pseudomonas aeruginosa Biofilms ; Cell; Vol. 182; No. 4; 919-932;
PMCID PMC7457544; 10.1016/j.cell.2020.07.006
Stepanik, Vincent; Sun, Jingjing; et el. (2020) FGF
Pyramus Has a Transmembrane Domain and Cell-Autonomous Function in
Polarity ; Current Biology; Vol. 30; No. 16; 3141-3153; PMCID
PMC7748623; 10.1016/j.cub.2020.06.006
Khazaei, Tahmineh; Williams, Rory L.; et el. (2020) Metabolic
multistability and hysteresis in a model aerobe-anaerobe microbiome
community ; Science Advances; Vol. 6; No. 33; Art. No. eaba0353;
PMCID PMC7423363; 10.1126/sciadv.aba0353
Shahbazi, Marta N.; Wang, Tianren; et el. (2020) Developmental
potential of aneuploid human embryos cultured beyond implantation ;
Nature Communications; Vol. 11; Art. No. 3987; PMCID PMC7418029; 10.1038/s41467-020-17764-7
Gradinaru, Viviana (2020) Expanding
the brain researcher’s toolkit ; Science; Vol. 369; No. 6504; 637; 10.1126/science.abd2660
Tsypin, Lev M.; Saunders, Scott H.; et el. (2020) Draft
Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter
portucalensis Strain MBL ; Microbiology Resource Announcements; Vol.
9; No. 32; Art. No. e00695-20; PMCID PMC7409854; 10.1128/mra.00695-20
Thompson, W. H.; Nair, R.; et el. (2020) A
data resource from concurrent intracranial stimulation and functional
MRI of the human brain ; Scientific Data; Vol. 7; Art. No. 258; PMCID
PMC7406507; 10.1038/s41597-020-00595-y
Hoffmann, Magnus A. G.; Bar-On, Yotam; et el. (2020) Nanoparticles
presenting clusters of CD4 expose a universal vulnerability of HIV-1 by
mimicking target cells ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 31; 18719-18728;
PMCID PMC7414181; 10.1073/pnas.2010320117
Vu, Tri T. M. and Varshavsky, Alexander (2020) The
ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron
Pathway ; Biochemistry; Vol. 59; No. 30; 2796-2812; PMCID PMC7669821;
10.1021/acs.biochem.0c00514
Zhang, Yandong; Sohn, Changho; et el. (2020) Detecting
protein and post-translational modifications in single cells with
iDentification and qUantification sEparaTion (DUET) ; Communications
Biology; Vol. 3; Art. No. 420; 10.1038/s42003-020-01132-8
Fincker, Maeva; Huber, Julie A.; et el. (2020) Metabolic
strategies of marine subseafloor Chloroflexi inferred from genome
reconstructions ; Environmental Microbiology; Vol. 22; No. 8;
3188-3204; 10.1111/1462-2920.15061
Su, Yapeng; Li, Guideng; et el. (2020) Systems
biology for investigating drug resistance mechanism of melanoma ;
Cancer Research; Vol. 80; No. 16; Art. No. 6585; 10.1158/1538-7445.am2020-6585
Choi, Jaebin; Taal, Adriaan J.; et el. (2020) Fully
Integrated Time-Gated 3D Fluorescence Imager for Deep Neural
Imaging ; IEEE Transactions on Biomedical Circuits and Systems; Vol.
14; No. 4; 636-645; 10.1109/tbcas.2020.3008513
Gorin, Gennady and Pachter, Lior (2020) Special
function methods for bursty models of transcription ; Physical Review
E; Vol. 102; No. 2; Art. No. 022409; 10.1103/physreve.102.022409
Dubois, Julien; Oya, Hiroyuki; et el. (2020) Causal
Mapping of Emotion Networks in the Human Brain: Framework and Initial
Findings ; Neuropsychologia; Vol. 145; Art. No. 106571; PMCID
PMC5949245; 10.1016/j.neuropsychologia.2017.11.015
Weatherbee, Bailey A. T.; Glover, David M.; et el. (2020) Expression
of SARS-CoV-2 receptor ACE2 and the protease TMPRSS2 suggests
susceptibility of the human embryo in the first trimester ; Open
Biology; Vol. 10; No. 8; 200162; PMCID PMC7479935; 10.1098/rsob.200162
Razo-Mejia, Manuel; Marzen, Sarah; et el. (2020) First-principles
prediction of the information processing capacity of a simple genetic
circuit ; Physical Review E; Vol. 102; No. 2; Art. No. 022404; 10.1103/PhysRevE.102.022404
Walton, Sophie J.; Wang, Han; et el. (2020) Caenorhabditis
elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene
Expression ; Genetics; Vol. 215; No. 4; 1039-1054; PMCID PMC7404228;
10.1534/genetics.120.302923
Liu, Lu; Zhang, Yue; et el. (2020) Characterization
of the dimeric CMG/pre-initiation complex and its transition into DNA
replication forks ; Cellular and Molecular Life Sciences; Vol. 77;
No. 15; 3041-3058; PMCID PMC11104849; 10.1007/s00018-019-03333-9
Partridge, E. Christopher; Chhetri, Surya B.; et el. (2020) Occupancy
maps of 208 chromatin-associated proteins in one human cell type ;
Nature; Vol. 583; No. 7818; 720-728; 10.1038/s41586-020-2023-4
He, Peng; Williams, Brian A.; et el. (2020) The
changing mouse embryo transcriptome at whole tissue and single-cell
resolution ; Nature; Vol. 583; No. 7818; 760-767; 10.1038/s41586-020-2536-x
Pleiner, Tino; Pinton Tomaleri, Giovani; et el. (2020) Structural
basis for membrane insertion by the human ER membrane protein
complex ; Science; Vol. 369; No. 6502; 433-436; PMCID PMC7547852; 10.1126/science.abb5008
Koromila, Theodora; Gao, Fan; et el. (2020) Odd-paired
is a pioneer-like factor that coordinates with Zelda to control gene
expression in embryos ; eLife; Vol. 9; Art. No. e59610; PMCID
PMC7417190; 10.7554/eLife.59610
Ladinsky, Mark S.; Gnanapragasam, Priyanthi N. P.; et el. (2020) Electron
tomography visualization of HIV-1 fusion with target cells using fusion
inhibitors to trap the pre-hairpin intermediate ; eLife; Vol. 9; Art.
No. e58411; PMCID PMC7394545; 10.7554/eLife.58411
Lim, Daniel C.; Joukov, Vladimir; et el. (2020) Redox
priming promotes Aurora A activation during mitosis ; Science
Signaling; Vol. 13; No. 641; Art. No. eabb6707; PMCID PMC8514121; 10.1126/scisignal.abb6707
Durand-Smet, Pauline; Spelman, Tamsin A.; et el. (2020) Cytoskeletal
organization in isolated plant cells under geometry control ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 29; 17399-17408; PMCID PMC7382239; 10.1073/pnas.2003184117
Chen, Yu-Chuan; Navarrete, Marian S.; et el. (2020) N-myristoyltransferase-1
is necessary for lysosomal degradation and mTORC1 activation in cancer
cells ; Scientific Reports; Vol. 10; Art. No. 11952; 10.1038/s41598-020-68615-w
Patel, Abhilash; Murray, Richard M.; et el. (2020) Assessment
of Robustness to Temperature in a Negative Feedback Loop and a
Feedforward Loop ; ACS Synthetic Biology; Vol. 9; No. 7; 1581-1590;
10.1021/acssynbio.0c00023
Ordyan, Mariam; Bartol, Tom; et el. (2020) Interactions
between calmodulin and neurogranin govern the dynamics of CaMKII as a
leaky integrator ; PLoS Computational Biology; Vol. 16; No. 7; Art.
No. e1008015; 10.1371/journal.pcbi.1008015
Quintero-Cadena, Porfirio; Lenstra, Tineke L.; et el. (2020) RNA
Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional
Bursting ; Molecular Cell; Vol. 79; No. 2; 207-220; 10.1016/j.molcel.2020.05.030
Hirokawa, Soichi; Chure, Griffin; et el. (2020) Sequence-Dependent
Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination ;
Nucleic Acids Research; Vol. 48; No. 12; 6726-6739; PMCID PMC7337519; 10.1093/nar/gkaa418
Han, Yanting and Adolphs, Ralph (2020) Estimating
the heritability of psychological measures in the Human Connectome
Project dataset ; PLoS ONE; Vol. 15; No. 7; Art. No. e0235860; PMCID
PMC7347217; 10.1371/journal.pone.0235860
Wang, Juan; Nikonorova, Inna A.; et el. (2020) Release
and targeting of polycystin-2-carrying ciliary extracellular
vesicles ; Current Biology; Vol. 30; No. 13; R755-R756; PMCID
PMC7668157; 10.1016/j.cub.2020.05.079
Bao, Pinglei; She, Liang; et el. (2020) A
map of object space in primate inferotemporal cortex ; Nature; Vol.
583; No. 7814; 103-108; PMCID PMC8088388; 10.1038/s41586-020-2350-5
Wittmann, Bruce J.; Knight, Anders M.; et el. (2020) Diversity-Oriented
Enzymatic Synthesis of Cyclopropane Building Blocks ; ACS Catalysis;
Vol. 10; No. 13; 7112-7116; PMCID PMC7709968; 10.1021/acscatal.0c01888
Noor El-Nachef, Wael and Bronner, Marianne (2020) The
people behind the papers - Wael Noor El-Nachef and Marianne Bronner ;
Development; Vol. 147; No. 13; Art. No. dev194001; 10.1242/dev.194001
Irizarry, Jihyun; McGehee, James; et el. (2020) Twist-dependent
ratchet functioning downstream from Dorsal revealed using a
light-inducible degron ; Genes and Development; Vol. 34; No. 13-14;
965-972; PMCID PMC7328519; 10.1101/gad.338194.120
Varuzhanyan, Grigor and Chan, David C. (2020) Mitochondrial
dynamics during spermatogenesis ; Journal of Cell Science; Vol. 133;
No. 14; Art. No. jcs235937; PMCID PMC7375475; 10.1242/jcs.235937
El-Nachef, Wael Noor and Bronner, Marianne E. (2020) De
novo enteric neurogenesis in post-embryonic zebrafish from Schwann cell
precursors rather than resident cell types ; Development; Vol. 147;
No. 13; Art. No. dev186619; PMCID PMC7375481; 10.1242/dev.186619
Ramaker, Ryne C.; Hardigan, Andrew A.; et el. (2020) Dissecting
the regulatory activity and sequence content of loci with exceptional
numbers of transcription factor associations ; Genome Research; Vol.
30; No. 7; 939-950; PMCID PMC7397867; 10.1101/gr.260463.119
Paradiso, Sergio; Brown, Warren S.; et el. (2020) Integration
Between Cerebral Hemispheres Contributes to Defense Mechanisms ;
Frontiers in Psychology; Vol. 11; Art. No. 1534; PMCID PMC7359856; 10.3389/fpsyg.2020.01534
Aravin, Alexei A. (2020) Pachytene
piRNAs as beneficial regulators or a defense system gone rogue ;
Nature Genetics; Vol. 52; No. 7; 644-645; 10.1038/s41588-020-0656-8
Minxha, Juri; Adolphs, Ralph; et el. (2020) Flexible
recruitment of memory-based choice representations by human
medial-frontal cortex ; Science; Vol. 368; No. 6498; Art.
No. eaba3313; PMCID PMC7531893; 10.1126/science.aba3313
Dong, Cheng; Chen, Shun-Jia; et el. (2020) Recognition
of nonproline N-terminal residues by the Pro/N-degron pathway ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 25; 14158-14167; PMCID PMC7322002; 10.1073/pnas.2007085117
Houghton, J. L.; Jones, C.; et el. (2020) Resolving
micron-scale heterogeneity in porewater δ³⁴S_(H₂S) by combining films
for in-situ sulfide capture and secondary ion mass spectrometry ;
Marine Chemistry; Vol. 223; Art. No. 103810; 10.1016/j.marchem.2020.103810
Kishore, Ranjana; Arnaboldi, Valerio; et el. (2020) Automated
generation of gene summaries at the Alliance of Genome Resources ;
Database : The Journal of Biological Databases and Curation; Vol. 2020;
Art. No. baaa037; PMCID PMC7304461; 10.1093/database/baaa037
Singla, Shruti; Iwamoto-Stohl, Lisa K.; et el. (2020) Autophagy-mediated
apoptosis eliminates aneuploid cells in a mouse model of chromosome
mosaicism ; Nature Communications; Vol. 11; Art. No. 2958; PMCID
PMC7290028; 10.1038/s41467-020-16796-3
Kyprianou, Christos; Christodoulou, Neophytos; et el. (2020) Basement
membrane remodelling regulates mouse embryogenesis ; Nature; Vol.
582; No. 7811; 253-258; PMCID PMC7308173; 10.1038/s41586-020-2264-2
Jia, Zhi-Jun; Gao, Shilong; et el. (2020) Enzymatic
Primary Amination of Benzylic and Allylic C(sp³)–H Bonds ; Journal of
the American Chemical Society; Vol. 142; No. 23; 10279-10283; 10.1021/jacs.0c03428
Bai, Xiaofei; Bouffard, Jeff; et el. (2020) Caenorhabditis
elegans PIEZO Channel Coordinates Multiple Reproductive Tissues to
Govern Ovulation ; eLife; Vol. 9; Art. No. e53603; 10.7554/eLife.53603
Mao, Shunfu; Pachter, Lior; et el. (2020) RefShannon:
A genome-guided transcriptome assembler using sparse flow
decomposition ; PLoS ONE; Vol. 15; No. 6; Art. No. e0232946; PMCID
PMC7266320; 10.1371/journal.pone.0232946
Svensson, Valentine; Gayoso, Adam; et el. (2020) Interpretable
factor models of single-cell RNA-seq via variational autoencoders ;
Bioinformatics; Vol. 36; No. 11; 3418-3421; PMCID PMC7267837; 10.1093/bioinformatics/btaa169
Polonsky, Michal; Round, Krista; et el. (2020) Analysis
of luminal breast cancer tumor microenvironment using seqFISH ;
Cancer Epidemiology, Biomarkers and Prevention; Vol. 29; No. 6; Art.
No. B117; 10.1158/1538-7755.disp18-b117
Ciemniecki, John A. and Newman, Dianne K. (2020) The
potential for redox-active metabolites (RAMs) to enhance or unlock
anaerobic survival metabolisms in aerobes ; Journal of Bacteriology;
Vol. 202; No. 11; Art. No. e00797-19; PMCID PMC7221258; 10.1128/jb.00797-19
Sun, Jingjing; Macabenta, Frank; et el. (2020) Collective
Migrations of Drosophila Embryonic Trunk and Caudal Mesoderm-Derived
Muscle Precursor Cells ; Genetics; Vol. 215; No. 2; 297-322; PMCID
PMC7268997; 10.1534/genetics.120.303258
Yang, Jing; Antin, Parker; et el. (2020) Guidelines
and definitions for research on epithelial–mesenchymal transition ;
Nature Reviews. Molecular Cell Biology; Vol. 21; No. 6; 341-352; 10.1038/s41580-020-0237-9
Strehle, Mackenzie and Guttman, Mitchell (2020) Xist
drives spatial compartmentalization of DNA and protein to orchestrate
initiation and maintenance of X inactivation ; Current Opinion in
Cell Biology; Vol. 64; 139-147; 10.1016/j.ceb.2020.04.009
Chuk, Tim; Chan, Antoni B.; et el. (2020) Eye
movement analysis with switching hidden Markov models ; Behavior
Research Methods; Vol. 52; No. 3; 1026-1043; PMCID PMC8613150; 10.3758/s13428-019-01298-y
Cho, Jaehyoung; Gao, Sibyl; et el. (2020) Vennter
– An interactive analysis tool for WormBase interaction data using Venn
diagrams ; microPublication Biology; micropub.biology.000258; PMCID
PMC7251783; 10.17912/micropub.biology.000258
Barlow, Jacob T.; Bogatyrev, Said R.; et el. (2020) A
Quantitative Sequencing Framework for Absolute Abundance Measurements of
Mucosal and Lumenal Microbial Communities ; Nature Communications;
Vol. 11; Art. No. 2590; PMCID PMC7244552; 10.1038/s41467-020-16224-6
Gallego-Hernandez, A. L.; DePas, W. H.; et el. (2020) Upregulation
of virulence genes promotes Vibrio cholerae biofilm
hyperinfectivity ; Proceedings of the National Academy of Sciences of
the United States of America; Vol. 117; No. 20; 11010-11017; PMCID
PMC7245069; 10.1073/pnas.1916571117
Oh, Jang-Hyun; Hyun, Ju-Yeon; et el. (2020) Five
enzymes of the Arg/N-degron pathway form a targeting complex: The
concept of superchanneling ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 20; 10778-10788;
PMCID PMC7245096; 10.1073/pnas.2003043117
Campos, Tulio L.; Korhonen, Pasi K.; et el. (2020) Predicting
gene essentiality in Caenorhabditis elegans by feature engineering and
machine-learning ; Computational and Structural Biotechnology
Journal; Vol. 18; 1093-1102; 10.1016/j.csbj.2020.05.008
Zhou, Andrew Z.; Chen, Kai; et el. (2020) Enzymatic
Lactone-Carbene C‒H Insertion to Build Contiguous Chiral Centers ;
ACS Catalysis; Vol. 10; No. 10; 5393-5398; 10.1021/acscatal.0c01349
Su, Yapeng; Ko, Melissa E.; et el. (2020) Multi-omic
single-cell snapshots reveal multiple independent trajectories to drug
tolerance in a melanoma cell line ; Nature Communications; Vol. 11;
Art. No. 2345; PMCID PMC7214418; 10.1038/s41467-020-15956-9
Zhang, Ting; Hay, Bruce A.; et el. (2020) Generation,
Analyzing and in-vivo Drug Treatment of Drosophila Models with
IBMPFD ; Bio-protocol; Vol. 10; No. 10; Art. No. e3621; PMCID
PMC7842768; 10.21769/bioprotoc.3621
Laxhuber, Kathrin S.; Morrison, Muir J.; et el. (2020) Theoretical
investigation of a genetic switch for metabolic adaptation ; PLoS
ONE; Vol. 15; No. 5; Art. No. e0226453; PMCID PMC7205307; 10.1371/journal.pone.0226453
Bassi, Ivan; Luzzani, Francesca; et el. (2020) Prokineticin
receptor 2 affects GnRH3 neuron ontogeny but not fertility in
zebrafish ; Scientific Reports; Vol. 10; Art. No. 7632; PMCID
PMC7229164; 10.1038/s41598-020-64077-2
Esswein, Shannon R.; Gristick, Harry B.; et el. (2020) Structural
basis for Zika envelope domain III recognition by a germline version of
a recurrent neutralizing antibody ; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 117; No. 18;
9865-9875; PMCID PMC7211955; 10.1073/pnas.1919269117
Ly, Sarah; Lee, Daniel A.; et el. (2020) Evolutionarily
Conserved Regulation of Sleep by the Protein Translational Regulator
PERK ; Current Biology; Vol. 30; No. 9; 1639-1648; PMCID PMC8788386;
10.1016/j.cub.2020.02.030
Gandhi, Shashank; Ezin, Max; et el. (2020) Reprogramming
Axial Level Identity to Rescue Neural-Crest-Related Congenital Heart
Defects ; Developmental Cell; Vol. 53; No. 3; 300-315; PMCID
PMC7255058; 10.1016/j.devcel.2020.04.005
Yu, Ziqing; Lyu, Weiyuan; et el. (2020) Self-partitioning
SlipChip for slip-induced droplet formation and human papillomavirus
viral load quantification with digital LAMP ; Biosensors and
Bioelectronics; Vol. 155; Art. No. 112107; 10.1016/j.bios.2020.112107
Clamons, Samuel; Qian, Lulu; et el. (2020) Programming
and simulating chemical reaction networks on a surface ; Journal of
the Royal Society Interface; Vol. 17; No. 166; Art. No. 20190790; PMCID
PMC7276541; 10.1098/rsif.2019.0790
Schattgen, Stefan A.; Crawford, Jeremy C.; et el. (2020) Intestinal
intraepithelial lymphocyte repertoires are imprinted clonal structures
selected for MHC reactivity ; Journal of Immunology; Vol. 204;
No. S1; Art. No. 84.4
Spolski, Rosanne; Li, Peng; et el. (2020) Functional
dissection of the Il2ra superenhancer reveals developmentally regulated
and cell type specific elements ; Journal of Immunology; Vol. 204;
No. S1; Art. No. 78.16
Leu, Andy O.; McIlroy, Simon J.; et el. (2020) Lateral
Gene Transfer Drives Metabolic Flexibility in the Anaerobic
Methane-Oxidizing Archaeal Family Methanoperedenaceae ; mBio; Vol.
11; No. 3; Art. No. e01325-20; PMCID PMC7327174; 10.1128/mBio.01325-20
Donaldson, Gregory P.; Chou, Wen-Chi; et el. (2020) Spatially
distinct physiology of Bacteroides fragilis within the proximal colon of
gnotobiotic mice ; Nature Microbiology; Vol. 5; No. 5; 746-756; 10.1038/s41564-020-0683-3
Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Multiplexed
Cre-dependent selection yields systemic AAVs for targeting distinct
brain cell types ; Nature Methods; Vol. 17; No. 5; 541-550; PMCID
PMC7219404; 10.1038/s41592-020-0799-7
Seo, Jai Woong; Ingham, Elizabeth S.; et el. (2020) Positron
emission tomography imaging of novel AAV capsids maps rapid brain
accumulation ; Nature Communications; Vol. 11; Art. No. 2102; PMCID
PMC7193641; 10.1038/s41467-020-15818-4
Kandul, Nikolay P.; Liu, Junru; et el. (2020) A
drug-inducible sex-separation technique for insects ; Nature
Communications; Vol. 11; Art. No. 2106; PMCID PMC7193620; 10.1038/s41467-020-16020-2
Hung, Shao-Min; Wu, Daw-An; et el. (2020) Task-induced
attention load guides and gates unconscious semantic interference ;
Nature Communications; Vol. 11; Art. No. 2088; PMCID PMC7190740; 10.1038/s41467-020-15439-x
Jang, Min Jee; Coughlin, Gerard M.; et el. (2020) Method
for High-Throughput, In Situ Characterization of AAV Variant Pools in
Intact Tissue Using Ultrasensitive Sequential FISH ; Molecular
Therapy; Vol. 28; No. 4; 78-79; 10.1016/j.ymthe.2020.04.019
Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2020) Targeting
the Rodent Peripheral Nervous System Efficiently and with Greater
Specificity through Intravenous Delivery of AAV Capsids Evolved by
Multiplexed-CREATE ; Molecular Therapy; Vol. 28; No. 4; 252-253; 10.1016/j.ymthe.2020.04.019
Padia, Umesh; Brown, David; et el. (2020) Cloud-based
Software for NGS Data Management and Analysis for Directed Evolution of
Peptide-Based Delivery Vectors ; Molecular Therapy; Vol. 28; No. 4;
434-435; 10.1016/j.ymthe.2020.04.019
Li, Shirley; Kujawski, Maciej; et el. (2020) Use
of Click-Chemistry to Make Bivalent Antibodies for Redirection of T
Cells: Proof of Concept in an In Vitro HIV Model ; Molecular Therapy;
Vol. 28; No. 4; 369; 10.1016/j.ymthe.2020.04.019
Brown, David; Altermatt, Michael; et el. (2020) A
Computational and Experimental Platform for Detecting Full Transcriptome
Cell Type Tropism of Lowly Expressed Barcoded and Pooled AAV Variants
via Single-Cell RNA Sequencing ; Molecular Therapy; Vol. 28; No. 4;
80-81; 10.1016/j.ymthe.2020.04.019
Hori, Acacia; Robinson, J. Elliott; et el. (2020) Recombinant
AAVs Target Custom Frataxin Therapeutic Cassettes to Tissues of
Pathophysiologic Relevance in Friedreich’s Ataxia ; Molecular
Therapy; Vol. 28; No. 4; 86-87; 10.1016/j.ymthe.2020.04.019
Mich, John K.; Gore, Bryan B.; et el. (2020) Building
a Toolbox of Compact Enhancers for Cell Type-Specific Gene Expression
from AAVs in the Primate Brain ; Molecular Therapy; Vol. 28; No. 4;
70; 10.1016/j.ymthe.2020.04.019
Goertsen, David; Flytzanis, Nicholas C.; et el. (2020) Transduction
Profiles of Engineered Adeno-Associated Viral Capsids in Mouse and
Marmoset ; Molecular Therapy; Vol. 28; No. 4; 269-270; 10.1016/j.ymthe.2020.04.019
Altermatt, Michael; Brown, David; et el. (2020) In-Depth
Parallel Profiling of Tissue and Cell-Type Tropism of AAV Variants by
Single-Cell RNA Sequencing ; Molecular Therapy; Vol. 28; No. 4;
399-400; 10.1016/j.ymthe.2020.04.019
Ding, Xiaozhe and Gradinaru, Viviana (2020) Structure-Guided
Rational Design of Adeno-Associated Viral Capsids with Expanded
Sizes ; Molecular Therapy; Vol. 28; No. 4; 226-227; 10.1016/j.ymthe.2020.04.019
Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Evolution
and Investigation of Engineered AAV Capsids Exhibiting Enhanced
Transduction of the Central Nervous System with or without Murine Strain
Specificity ; Molecular Therapy; Vol. 28; No. 4; 11-12; 10.1016/j.ymthe.2020.04.019
Ortega, Davi R.; Yang, Wen; et el. (2020) Repurposing
a chemosensory macromolecular machine ; Nature Communications; Vol.
11; Art. No. 2041; PMCID PMC7184735; 10.1038/s41467-020-15736-5
Oberhofer, Georg; Ivy, Tobin; et el. (2020) Gene
drive and resilience through renewal with next generation Cleave and
Rescue selfish genetic elements ; Proceedings of the National Academy
of Sciences of the United States of America; Vol. 117; No. 16;
9013-9021; PMCID PMC7183144; 10.1073/pnas.1921698117
Kaplan, Mohammed; Sweredoski, Michael J.; et el. (2020) Bacterial
flagellar motor PL-ring disassembly subcomplexes are widespread and
ancient ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 16; 8941-8947; PMCID PMC7183148;
10.1073/pnas.1916935117
Wang, Feng; Li, Shan; et el. (2020) Allosteric
p97 inhibitors can overcome resistance to ATP-competitive p97 inhibitors
for potential anti-cancer therapy ; ChemMedChem; Vol. 15; No. 8;
685-694; PMCID PMC9049325; 10.1002/cmdc.201900722
Rolando, Justin C.; Jue, Erik; et el. (2020) Real-time
kinetics and high-resolution melt curves in single-molecule digital LAMP
to differentiate and study specific and non-specific amplification ;
Nucleic Acids Research; Vol. 48; No. 7; Art. No. e42; PMCID PMC7144905;
10.1093/nar/gkaa099
Rauch, Jennifer N.; Luna, Gabriel; et el. (2020) LRP1
is a master regulator of tau uptake and spread ; Nature; Vol. 580;
No. 7803; 381-385; 10.1038/s41586-020-2156-5
Chen, Kai and Arnold, Frances H. (2020) Engineering
cytochrome P450s for enantioselective cyclopropenation of internal
alkynes ; Journal of the American Chemical Society; Vol. 142; No. 15;
6891-6895; 10.1021/jacs.0c01313
Lee, Kyu Hyung; Tran, Alvita; et el. (2020) The
sifting of visual information in the superior colliculus ; eLife;
Vol. 9; Art. No. e50678; 10.7554/elife.50678
Van Rompay, Koen K. A.; Coffey, Lark L.; et el. (2020) A
Combination of Two Human Monoclonal Antibodies Limits Fetal Damage by
Zika Virus in Macaques ; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 14; 7981-7989;
PMCID PMC7149495; 10.1073/pnas.2000414117
Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Living
a Sweet Life: Glucose Instructs Cell Fate in the Mouse Embryo ;
Developmental Cell; Vol. 53; No. 1; 1-2; 10.1016/j.devcel.2020.03.012
Goffredi, Shana K.; Tilic, Ekin; et el. (2020) Methanotrophic
bacterial symbionts fuel dense populations of deep-sea feather duster
worms (Sabellida, Annelida) and extend the spatial influence of methane
seepage ; Science Advances; Vol. 6; No. 14; Art. No. eaay8562; 10.1126/sciadv.aay8562
Carter, Stephen D.; Hampton, Cheri M.; et el. (2020) Ribosome-associated
vesicles: A dynamic subcompartment of the endoplasmic reticulum in
secretory cells ; Science Advances; Vol. 6; No. 14; Art.
No. eaay9572; PMCID PMC7112762; 10.1126/sciadv.aay9572
Lin, Chujun; Keleş, Ümit; et el. (2020) No
strong evidence that social network index is associated with gray matter
volume from a data-driven investigation ; Cortex; Vol. 125; 307-317;
PMCID PMC7774327; 10.1016/j.cortex.2020.01.021
Pu, Haoran; Lim, Jeffrey; et el. (2020) Optimal
artifact suppression in simultaneous electrocorticography stimulation
and recording for bi-directional brain-computer interface
applications ; Journal of Neural Engineering; Vol. 17; No. 2; Art.
No. 026038; 10.1088/1741-2552/ab82ac
Yao, Shenqin; Yuan, Peng; et el. (2020) RecV
recombinase system for in vivo targeted optogenomic modifications of
single cells or cell populations ; Nature Methods; Vol. 17; No. 4;
422-429; PMCID PMC7135964; 10.1038/s41592-020-0774-3
Leu, Andy O.; Cai, Chen; et el. (2020) Anaerobic
methane oxidation coupled to manganese reduction by members of the
Methanoperedenaceae ; ISME Journal; Vol. 14; No. 4; 1030-1041; PMCID
PMC7082337; 10.1038/s41396-020-0590-x
Bar-On, Yinon M.; Flamholz, Avi; et el. (2020) SARS-CoV-2
(COVID-19) by the numbers ; eLife; Vol. 9; Art. No. e57309; PMCID
PMC7224694; 10.7554/elife.57309
Schoepp, Nathan G.; Liaw, Eric J.; et el. (2020) Differential
DNA accessibility to polymerase enables 30-minute phenotypic β-lactam
antibiotic susceptibility testing of carbapenem-resistant
Enterobacteriaceae ; PLoS Biology; Vol. 18; No. 3; Art. No. 3000652;
PMCID PMC7081982; 10.1371/journal.pbio.3000652
Savela, Emily S.; Schoepp, Nathan G.; et el. (2020) Surfactant-enhanced
DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic
susceptibility testing of Neisseria gonorrhoeae ; PLoS Biology; Vol.
18; No. 3; Art. No. 3000651; PMCID PMC7081974; 10.1371/journal.pbio.3000651
Arnaboldi, Valerio; Raciti, Daniela; et el. (2020) Text
mining meets community curation: a newly designed curation platform to
improve author experience and participation at WormBase ; Database :
The Journal of Biological Databases and Curation; Vol. 2020; Art.
No. baaa006; PMCID PMC7078066; 10.1093/database/baaa006
Inglis, Alison J.; Page, Katharine R.; et el. (2020) Differential
modes of orphan subunit recognition for the WRB/CAML complex ; Cell
Reports; Vol. 30; No. 11; 3691-3698; PMCID PMC7147533; 10.1016/j.celrep.2020.02.084
Quinn, Robert A.; Melnik, Alexey V.; et el. (2020) Global
chemical effects of the microbiome include new bile-acid
conjugations ; Nature; Vol. 579; No. 7797; 123-129; 10.1038/s41586-020-2047-9
Flyak, Andrew I.; Ruiz, Stormy E.; et el. (2020) An
ultralong CDRH2 in HCV neutralizing antibody demonstrates structural
plasticity of antibodies against E2 glycoprotein ; eLife; Vol. 9;
Art. No. e53169; PMCID PMC7064334; 10.7554/elife.53169
Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Nonequilibrium
thermodynamics of erasure with superconducting flux logic ; Physical
Review Research; Vol. 2; No. 1; Art. No. 013249; 10.1103/PhysRevResearch.2.013249
El-Nachef, Wael and Bronner, Marianne (2020) De
novo neurogenesis in the post-embryonic zebrafish enteric nervous system
from Schwann cell precursors rather than resident cell types ;
Neurogastroenterology and Motility; Vol. 32; No. S1; Art. No. 29; 10.1111/nmo.13817
Wagner, J. M. and Parker, J. (2020) Chemical
Cues Underly an Interspecies Symbiosis by Triggering a Modular
Social-Behavioral Program ; Integrative and Comparative Biology; Vol.
60; No. S1; E244; 10.1093/icb/icaa006
Kishi, Y.; Bruckner, A.; et el. (2020) Hox-logic
of Rove Beetle Chemical Weaponry ; Integrative and Comparative
Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
Naragon, T. H.; Brückner, A. K.; et el. (2020) Cuticular
hydrocarbons and the integration of myrmecophile rove beetles into ant
colonies ; Integrative and Comparative Biology; Vol. 60; No. S1;
E170; 10.1093/icb/icaa006
Behbahani, A. H.; Rak, A. K.; et el. (2020) Flies
Remember Multiple Food Locations in the Absence of External Cues ;
Integrative and Comparative Biology; Vol. 60; No. S1; E15; 10.1093/icb/icaa006
Kitchen, S. A.; Bruckner, A.; et el. (2020) Genomic
insights into gland development of rove beetles ; Integrative and
Comparative Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
Yousefelahiyeh, M.; Miller, D. R.; et el. (2020) Dalotia
coriaria as a genetic model system of animal symbiosis ; Integrative
and Comparative Biology; Vol. 60; No. S1; E452; 10.1093/icb/icaa007
Mehrotra, Pihu; Tseropoulos, Georgios; et el. (2020) Adult
tissue-derived neural crest‐like stem cells: Sources, regulatory
networks, and translational potential: Concise review ; Stem Cells
Translational Medicine; Vol. 9; No. 3; 328-341; 10.1002/sctm.19-0173
Zhang, Carey Y.; Aflalo, Tyson; et el. (2020) Preservation
of partially mixed selectivity in human posterior parietal cortex across
changes in task context ; eNeuro; Vol. 7; No. 2; Art.
No. 0222-19.2019; PMCID PMC7070450; 10.1523/eneuro.0222-19.2019
Challis, Collin; Hori, Acacia; et el. (2020) Gut-seeded
α-synuclein fibrils promote gut dysfunction and brain pathology
specifically in aged mice ; Nature Neuroscience; Vol. 23; No. 3;
327-336; PMCID PMC7065967; 10.1038/s41593-020-0589-7
Chen, Kai and Arnold, Frances H. (2020) Engineering
new catalytic activities in enzymes ; Nature Catalysis; Vol. 3;
No. 3; 203-213; 10.1038/s41929-019-0385-5
Brueckner, A. and Parker, J. (2020) Single
Cell Assembly of a Chemical Key Innovation in a Rove Beetle ;
Integrative and Comparative Biology; Vol. 60; No. S1; E25; 10.1093/icb/icaa006
Haas, Kalina T.; Wightman, Raymond; et el. (2020) Pectin
homogalacturonan nanofilament expansion drives morphogenesis in plant
epidermal cells ; Science; Vol. 367; No. 6481; 1003-1007; PMCID
PMC7932746; 10.1126/science.aaz5103
Basta, David W.; Angeles-Albores, David; et el. (2020) Heat-shock
proteases promote survival of Pseudomonas aeruginosa during growth
arrest ; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 8; 4358-4367; PMCID PMC7049150;
10.1073/pnas.1912082117
Milham, Michael; Petkov, Christopher I.; et el. (2020) Accelerating
the Evolution of Nonhuman Primate Neuroimaging ; Neuron; Vol. 105;
No. 4; 600-603; PMCID PMC7610430; 10.1016/j.neuron.2019.12.023
Gorin, Gennady; Svensson, Valentine; et el. (2020) RNA
velocity and protein acceleration from single-cell multiomics
experiments ; Genome Biology; Vol. 21; Art. No. 39; PMCID PMC7029606;
10.1186/s13059-020-1945-3
Olina, Anna; Kuzmenko, Anton; et el. (2020) Genome-wide
DNA sampling by Ago nuclease from the cyanobacterium Synechococcus
elongatus ; RNA Biology; Vol. 17; No. 5; 677-688; PMCID PMC7237159;
10.1080/15476286.2020.1724716
Bogatyrev, Said R.; Rolando, Justin C.; et el. (2020) Self-reinoculation
with fecal flora changes microbiota density and composition leading to
an altered bile-acid profile in the mouse small intestine ;
Microbiome; Vol. 8; Art. No. 19; PMCID PMC7017497; 10.1186/s40168-020-0785-4
Sampson, Timothy R.; Challis, Collin; et el. (2020) A
gut bacterial amyloid promotes α-synuclein aggregation and motor
impairment in mice ; eLife; Vol. 9; Art. No. e53111; PMCID
PMC7012599; 10.7554/elife.53111
Grant, Stephen; Muthusamy, Anand K.; et el. (2020) Antagonists
Pharmacologically Chaperone Opioid Receptors ; Biophysical Journal;
Vol. 118; No. 3; 27a; 10.1016/j.bpj.2019.11.328
Salmon, Gabe and Phillips, Rob (2020) Modeling
Microbial Interactions across Nutritional Environments using Maximum
Entropy ; Biophysical Journal; Vol. 118; No. 3; 347a; 10.1016/j.bpj.2019.11.2004
McCarty, Nicholas S.; Razo-Mejia, Manuel; et el. (2020) Genetic
Barcodes Enable Quantitative Mapping of Operator Mutants to Gene
Expression ; Biophysical Journal; Vol. 118; No. 3; 611a; 10.1016/j.bpj.2019.11.3298
Metskas, Lauren Ann; Ho, Samuel; et el. (2020) The
Effect of Cryo Temperature on Commonly used Fluorophores ;
Biophysical Journal; Vol. 118; No. 3; 150a-151a; 10.1016/j.bpj.2019.11.942
Galstyan, Vahe; Husain, Kabir; et el. (2020) Kinetic
Proofreading using Substrate Gradients and Enzyme Diffusion ;
Biophysical Journal; Vol. 118; No. 3; 573a-574a; 10.1016/j.bpj.2019.11.3118
Banks, Rachel; Lee, Heun Jin; et el. (2020) Bridging
Kinesin Properties with System-scale Characteristics of
Microtubule-Motor Assemblies ; Biophysical Journal; Vol. 118; No. 3;
176a-177a; 10.1016/j.bpj.2019.11.1081
Phillips, Rob (2020) Schrodinger’s
“What is Life” At 75: The Physical Aspects of the Living Cell
Revisited ; Biophysical Journal; Vol. 118; No. 3; 2a; 10.1016/j.bpj.2019.11.204
Weaver, Sara J.; Sazinsky, Matthew H.; et el. (2020) CryoEM
Structure of the Vibrio cholerae Type IV Pilus Secretin PilQ ;
Biophysical Journal; Vol. 118; No. 3; 12a; 10.1016/j.bpj.2019.11.247
Chure, Griffin and Phillips, Rob (2020) The
Molecular Biophysics of Adaptation ; Biophysical Journal; Vol. 118;
No. 3; 545a; 10.1016/j.bpj.2019.11.2983
Schommers, Philipp; Gruell, Henning; et el. (2020) Restriction
of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody ;
Cell; Vol. 180; No. 3; 471-489; PMCID PMC7042716; 10.1016/j.cell.2020.01.010
Ninova, Maria; Chen, Yung-Chia Ariel; et el. (2020) Su(var)2-10
and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin
Silencing ; Molecular Cell; Vol. 77; No. 3; 556-570; PMCID
PMC7007863; 10.1016/j.molcel.2019.11.012
Ninova, Maria; Godneeva, Baira; et el. (2020) The
SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression
via Establishing H3K9 Trimethylation and Negative Feedback
Regulation ; Molecular Cell; Vol. 77; No. 3; 571-585; PMCID
PMC7007874; 10.1016/j.molcel.2019.09.033
Jue, Erik; Witters, Daan; et el. (2020) Two-phase
wash to solve the ubiquitous contaminant-carryover problem in commercial
nucleic-acid extraction kits ; Scientific Reports; Vol. 10; Art.
No. 1940; PMCID PMC7004994; 10.1038/s41598-020-58586-3
Chen, Shun-Jia; Melnykov, Artem; et el. (2020) Evolution
of Substrates and Components of the Pro/N-Degron Pathway ;
Biochemistry; Vol. 59; No. 4; 582-593; PMCID PMC7286083; 10.1021/acs.biochem.9b00953
Brückner, Adrian and Parker, Joseph (2020) Molecular
evolution of gland cell types and chemical interactions in animals ;
Journal of Experimental Biology; Vol. 223; No. Suppl 1; Art. No. 223; 10.1242/jeb.211938
Frankiw, Luke; Mann, Mati; et el. (2020) Alternative
Splicing Coupled with Transcript Degradation Modulates OAS1g Antiviral
Activity ; RNA; Vol. 26; No. 2; 126-136; PMCID PMC6961538; 10.1261/rna.073825.119
Ueda, Hiroki R.; Ertürk, Ali; et el. (2020) Tissue
clearing and its applications in neuroscience ; Nature Reviews.
Neuroscience; Vol. 21; No. 2; 61-79; PMCID PMC8121164; 10.1038/s41583-019-0250-1
Glover, David M. (2020) Open
Biology in a new decade ; Open Biology; Vol. 10; No. 2; Art.
No. 200025; PMCID PMC7058933; 10.1098/rsob.200025
Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Building
an apical domain in the early mouse embryo: Lessons, challenges and
perspectives ; Current Opinion in Cell Biology; Vol. 62; 144-149; 10.1016/j.ceb.2019.11.005
Bjorkman, Pamela J. (2020) Can
we use structural knowledge to design a protective vaccine against
HIV-1? ; HLA; Vol. 95; No. 2; 95-103; 10.1111/tan.13759
Dickinson, Michael H.; Vosshall, Leslie B.; et el. (2020) Genome
editing in non-model organisms opens new horizons for comparative
physiology ; Journal of Experimental Biology; Vol. 223; No. Suppl 1;
1; 10.1242/jeb.221119
Jung, Yonil; Kennedy, Ann; et el. (2020) Neurons
that Function within an Integrator to Promote a Persistent Behavioral
State in Drosophila ; Neuron; Vol. 105; No. 2; 322-333; PMCID
PMC6981076; 10.1016/j.neuron.2019.10.028
Su, Yu-Lin; Wang, Xiuli; et el. (2020) Myeloid
Cell-Targeted miR-146a Mimic Inhibits NF-kB-Driven Inflammation and
Leukemia Progression in Vivo ; Blood; Vol. 135; No. 3; 167-180; PMCID
PMC6966933; 10.1182/blood.2019002045
Mastro, Tara L.; Preza, Anthony; et el. (2020) A
sex difference in the response of the rodent postsynaptic density to
synGAP haploinsufficiency ; eLife; Vol. 9; Art. No. e52656; PMCID
PMC6994236; 10.7554/elife.52656
Watkins, Ella J.; Almhjell, Patrick J.; et el. (2020) Direct
enzymatic synthesis of a deep-blue fluorescent noncanonical amino acid
from azulene and serine ; ChemBioChem; Vol. 21; No. 1-2; 80-83; PMCID
PMC6980211; 10.1002/cbic.201900497
Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Modification
of electron-phonon coupling by micromachining and suspension ;
Journal of Applied Physics; Vol. 127; No. 2; Art. No. 024307; 10.1063/1.5132948
Zheng, Li; Meng, Yuan; et el. (2020) Multiple
roles of DNA2 nuclease/helicase in DNA metabolism, genome stability and
human diseases ; Nucleic Acids Research; Vol. 48; No. 1; 16-35; PMCID
PMC6943134; 10.1093/nar/gkz1101
Augustine, Vineet; Lee, Sangjun; et el. (2020) Neural
Control and Modulation of Thirst, Sodium Appetite, and Hunger ; Cell;
Vol. 180; No. 1; 25-32; PMCID PMC7406138; 10.1016/j.cell.2019.11.040
Agapite, Julie; Albou, Laurent-Philippe; et el. (2020) Alliance
of Genome Resources Portal: unified model organism research
platform ; Nucleic Acids Research; Vol. 48; No. D1; D650-D658; PMCID
PMC6943066; 10.1093/nar/gkz813
Harris, Todd W.; Arnaboldi, Valerio; et el. (2020) WormBase:
a modern Model Organism Information Resource ; Nucleic Acids
Research; Vol. 48; No. D1; D762-D767; PMCID PMC7145598; 10.1093/nar/gkz920
Hosokawa, Hiroyuki; Romero-Wolf, Maile; et el. (2020) Cell
type–specific actions of Bcl11b in early T-lineage and group 2 innate
lymphoid cells ; Journal of Experimental Medicine; Vol. 217; No. 1;
Art. No. e20190972; PMCID PMC7037248; 10.1084/jem.20190972
Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2020) Brain
Region-Specific nAChR and Associated Protein Abundance Alterations
Following Chronic Nicotine and/or Menthol Exposure ; Journal of
Proteome Research; Vol. 19; No. 1; 36-48; PMCID PMC7289315; 10.1021/acs.jproteome.9b00286
Przepiorski, Aneta; Sander, Veronika; et el. (2018) A Simple
Bioreactor-Based Method to Generate Kidney Organoids from Pluripotent
Stem Cells ; Stem Cell Reports; Vol. 11; No. 2; 470-484; 10.1016/j.stemcr.2018.06.018
Bergkessel, Megan; Basta, David W.; et el. (2016) The
physiology of growth arrest: uniting molecular and environmental
microbiology ; Nature Reviews Microbiology; Vol. 14; No. 9; 549-562;
PMCID PMC10069271; 10.1038/nrmicro.2016.107
Liu, Cambrian Y.; Xiao, Cheng; et el. (2012) Electrophysiological
characterization of Grueneberg ganglion olfactory neurons: spontaneous
firing, sodium conductance, and hyperpolarization-activated
currents ; Journal of Neurophysiology; Vol. 108; No. 5; 1318-1334; 10.1152/jn.00907.2011
Dickinson, Mary E.; Selleck, Mark A. J.; et el. (1995) Dorsalization
of the neural tube by the non-neural ectoderm ; Development; Vol.
121; No. 7; 2099-2106
Flytzanis, Constantin N.; McMahon, Andrew P.; et el. (1985) Persistence
and Integration of Cloned DNA in Postembryonic Sea Urchins ;
Developmental Biology; Vol. 108; No. 2; 431-442; 10.1016/0012-1606(85)90046-6
McMahon, Andrew P.; Flytzanis, Constantin N.; et el. (1985) Introduction
of Cloned DNA into Sea Urchin Egg Cytoplasm: Replication and Persistence
during Embryogenesis ; Developmental Biology; Vol. 108; No. 2;
420-430; 10.1016/0012-1606(85)90045-4
McMahon, A. P.; Novak, T. J.; et el. (1984) Inducible
expression of a cloned heat shock fusion gene in sea urchin embryos ;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 81; No. 23; 7490-7494; PMCID PMC392172
