Division of Biology and Biological Engineering (BBE)

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Articles from CaltechAUTHORS

Edens, Brittany M.; Lin, Jason; et al. (2025) Ancient emergence of neuronal heterogeneity in the enteric nervous system of jawless vertebrates; Developmental Biology; Vol. 520; 117-124; 10.1016/j.ydbio.2024.12.020
Akella, Prithvi; Ahmadi, Mohamadreza; et al. (2025) Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications; IEEE Transactions on Automatic Control; Vol. 70; No. 4; 2180 - 2195
Coughlin, Gerard M.; Borsos, Máté; et al. (2025) Spatial genomics of AAV vectors reveals mechanism of transcriptional crosstalk that enables targeted delivery of large genetic cargo; Nature Biotechnology; Vol. 43; 10.1038/s41587-025-02565-4
Pollak, Daniel J.; Vahaba, Daniel M.; et al. (2025) Parsing social context in auditory forebrain of male zebra finches; PLOS ONE; Vol. 20; No. 3; e0314795; 10.1371/journal.pone.0314795
Suryawinata, Nadia and Mazmanian, Sarkis K. (2025) Does Gut Microbiome Composition Influence the Efficacy of Psychiatric Drugs?; European Medical Journal; Vol. 10; No. 1; 40-46; 10.33590/emj/cseb2440
Uslan, Travis; Quan, Baiyi; et al. (2025) In-Depth Comparison of Reagent-Based Digestion Methods and Two Commercially Available Kits for Bottom-Up Proteomics; ACS Omega; 10.1021/acsomega.4c11585
Wang, Zitong Jerry; Farooq, Abdullah S.; et al. (2025) Identifying perturbations that boost T-cell infiltration into tumours via counterfactual learning of their spatial proteomic profiles; Nature Biomedical Engineering; 10.1038/s41551-025-01357-0
Readhead, Carol; Mahler, Simon; et al. (2025) Automated non-invasive laser speckle imaging of the chick heart rate and extraembryonic blood vessels and their response to nifedipine and amlodipine drugs; Developmental Biology; Vol. 519; 46-54; 10.1016/j.ydbio.2024.12.005
Askary, Amjad; Chen, Wei; et al. (2025) The lives of cells, recorded; Nature Reviews Genetics; Vol. 26; 203–222; 10.1038/s41576-024-00788-w
Urzúa Lehuedé, Tomás; Berdion Gabarain, Victoria; et al. (2025) Two antagonistic gene regulatory networks drive Arabidopsis root hair growth at low temperature linked to a low‐nutrient environment; New Phytologist; 10.1111/nph.20406
Swartwood, Brea (2025) Stability analysis of traveling wave fronts in a model for tumor growth; Nonlinear Analysis: Real World Applications; Vol. 81; 104176; 10.1016/j.nonrwa.2024.104176
Mall, Raghvendra; Kaushik, Rahul; et al. (2025) Benchmarking protein language models for protein crystallization; Scientific Reports; Vol. 15; No. 1; 2381; 10.1038/s41598-025-86519-5
Yang, Jason; Lal, Ravi G.; et al. (2025) Active learning-assisted directed evolution; Nature Communications; Vol. 16; No. 1; 714; 10.1038/s41467-025-55987-8
Yang, Xi; Yan, An; et al. (2025) Single cell derived multicellular meristem: insights into male-to-hermaphrodite conversion and de novo meristem formation in ceratopteris; Development; 10.1242/dev.204411
Chen, Peiwei; Pan, Katherine C.; et al. (2025) Escalation of genome defense capacity enables control of an expanding meiotic driver; Proceedings of the National Academy of Sciences; Vol. 122; No. 2; e2418541122; 10.1073/pnas.2418541122
Jeske, Melanie; Garcia, Jason; et al. (2025) Developing an intervention tool for diversity, equity and inclusion (DEI) in laboratory settings; Science as Culture; Vol. 34; No. 1; 73–88; 10.1080/09505431.2024.2442907
Sastry, Karteekeya; Aborahama, Yousuf; et al. (2025) Transcranial photoacoustic tomography de-aberrated using boundary elements; IEEE Transactions on Medical Imaging; 1-1; 10.1109/tmi.2025.3526000
Kuintzle, Rachael; Santat, Leah A; et al. (2025) Diversity in Notch ligand-receptor signaling interactions; eLife; Vol. 12; 10.7554/elife.91422
Lin, Chujun; Keles, Umit; et al. (2025) How trait impressions of faces shape subsequent mental state inferences; Nature Human Behaviour; Vol. 9; 208–226; 10.1038/s41562-024-02059-4
Merk, Liana N.; Shur, Andrey S.; et al. (2024) Diagnostic and Therapeutic Microbial Circuit with Application to Intestinal Inflammation; ACS Synthetic Biology; Vol. 13; No. 12; 3885–3896; 10.1021/acssynbio.3c00668
Sánchez-Guardado, Luis; Razavi, Peyman Callejas; et al. (2024) Projection neurons are necessary for the maintenance of the mouse olfactory circuit; eLife; Vol. 13; 10.7554/elife.90296
Sakai, Alexandra; Singh, Gagandeep; et al. (2024) Inhibition of SARS-CoV-2 growth in the lungs of mice by a peptide-conjugated morpholino oligomer targeting viral RNA; Moleclar Therapy - Nucleic Acids; Vol. 35; No. 4; 102331; 10.1016/j.omtn.2024.102331
Haghi, Benyamin; Aflalo, Tyson; et al. (2024) Enhanced control of a brain–computer interface by tetraplegic participants via neural-network-mediated feature extraction; Nature Biomedical Engineering; 10.1038/s41551-024-01297-1
Cao, Runnan; Dubois, Julien; et al. (2024) Domain-specific representation of social inference by neurons in the human amygdala and hippocampus; Science Advances; Vol. 10; No. 49; 10.1126/sciadv.ado6166
DeLaitsch, Andrew T.; Keeffe, Jennifer R.; et al. (2024) Neutralizing antibodies elicited in macaques recognize V3 residues on altered conformations of HIV-1 Env trimer; npj Vaccines; Vol. 9; No. 1; 240; 10.1038/s41541-024-01038-0
Felce, Catherine; Gorin, Gennady; et al. (2024) Biophysical model for joint analysis of chromatin and RNA sequencing data; Physical Review E; Vol. 110; No. 6; 064405; 10.1103/physreve.110.064405
Squyres, Georgia R and Newman, Dianne (2024) Biofilms as more than the sum of their parts: lessons from developmental biology; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
Jing, Zeyu and Meister, Markus (2024) A Fast Algorithm for All-Pairs-Shortest-Paths Suitable for Neural Networks; Neural Computation; Vol. 36; No. 12; 2710-2733; 10.1162/neco_a_01716
Castillo-Ramírez, Luis A.; Herget, Ulrich; et al. (2024) Early-life challenge enhances cortisol regulation in zebrafish larvae; Biology Open; Vol. 13; No. 12; 10.1242/bio.061684
Srivastava, Aruesha; Nair, Aryana; et al. (2024) Structures of Trichomonas vaginalis macrophage migratory inhibitory factor; Acta Crystallographica. Section F; Vol. 80; No. 12; 341-347; 10.1107/s2053230x24011105
Nayak, Rohit; Duan, Mengtong; et al. (2024) Harmonic imaging for nonlinear detection of acoustic biomolecules; APL Bioengineering; Vol. 8; No. 4; 046110; 10.1063/5.0214306
Watanabe, Kiichi; Chiu, Hui; et al. (2024) Whole-brain in situ mapping of neuronal activation in Drosophila during social behaviors and optogenetic stimulation; eLife; Vol. 12; 10.7554/elife.92380
Ciemniecki, John A.; Ho, Chia-Lun; et al. (2024) Mechanistic study of a low-power bacterial maintenance state using high-throughput electrochemistry; Cell; Vol. 187; No. 24; 6882-6895.e8; 10.1016/j.cell.2024.09.042
Wang, Tongtong; Teng, Bochuan; et al. (2024) Organ-specific sympathetic innervation defines visceral functions; Nature; 10.1038/s41586-024-08269-0
Jaeger, Eliza C.B.; Vijatovic, David; et al. (2024) Adeno-associated viral tools to trace neural development and connectivity across amphibians; Developmental Cell; 10.1016/j.devcel.2024.10.025
Perez, Andrew A.; Goronzy, Isabel N.; et al. (2024) ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements; Nature Genetics; Vol. 56; 2827–2841; 10.1038/s41588-024-02000-5
Feng, Shu; Xie, Na; et al. (2024) Cryptic phosphoribosylase activity of NAMPT restricts the virion incorporation of viral proteins; Nature Metabolism; Vol. 6; 2300–2318; 10.1038/s42255-024-01162-0
Amit, Ido; Ardlie, Kristin; et al. (2024) The commitment of the human cell atlas to humanity; Nature Communications; Vol. 15; No. 1; 10019; 10.1038/s41467-024-54306-x
Kirby, Emily; Bernier, Alexander; et al. (2024) Data sharing ethics toolkit: The Human Cell Atlas; Nature Communications; Vol. 15; No. 1; 9901; 10.1038/s41467-024-54300-3
Kapasiawala, Manisha and Murray, Richard M. (2024) Metabolic Perturbations to an Escherichia coli-based Cell-Free System Reveal a Trade-off between Transcription and Translation; ACS Synthetic Biology; Vol. 13; No. 12; 3976–3990; 10.1021/acssynbio.4c00361
Ladinsky, Mark S.; Zhu, Li; et al. (2024) Electron tomography visualization of HIV-1 virions trapped by fusion inhibitors to host cells in infected tissues; Journal of Virology; Vol. 98; No. 11; e01432-24; PMCID PMC11575291; 10.1128/jvi.01432-24
Santorelli, Marco; Bhamidipati, Pranav S.; et al. (2024) Control of spatio-temporal patterning via cell growth in a multicellular synthetic gene circuit; Nature Communications; Vol. 15; 9867; 10.1038/s41467-024-53078-8
Zhao, Bingqian; He, Xiaolong; et al. (2024) Multi-touch microcapsules/silicone-polyacrylate hybrid hydrogels with precise self-healing ability and their self-powered sensing applications in emergency rescue; Chemical Engineering Journal; Vol. 500; 157149; 10.1016/j.cej.2024.157149
Horak, Richard D.; Ciemniecki, John A.; et al. (2024) Bioenergetic suppression by redox-active metabolites promotes antibiotic tolerance in Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences; Vol. 121; No. 46; e2406555121; 10.1073/pnas.2406555121
Tamborini, Alessio and Gharib, Morteza (Mory) (2024) Listening to heart sounds through the pressure waveform; Scientific Reports; Vol. 14; No. 1; 26824; 10.1038/s41598-024-78554-5
Sun, Jiaqiu Vince; Jing, Zeyu; et al. (2024) Perceptual tri-stability, measured and fitted as emergent from a model for bistable alternations; Hearing Research; Vol. 453; 109123; 10.1016/j.heares.2024.109123
Morais, Livia H.; Boktor, Joseph C.; et al. (2024) α-synuclein overexpression and the microbiome shape the gut and brain metabolome in mice; npj Parkinson’s Disease; Vol. 10; No. 1; 208; 10.1038/s41531-024-00816-w
Sader, John E.; Gomez, Alfredo; et al. (2024) Data-driven fingerprint nanoelectromechanical mass spectrometry; Nature Communications; Vol. 15; No. 1; 8800; 10.1038/s41467-024-51733-8
Hadas, Ron; Rubinstein, Hernan; et al. (2024) Temporal BMP4 effects on mouse embryonic and extraembryonic development; Nature; Vol. 634; 652–661; 10.1038/s41586-024-07937-5
Shin, Boyoung; Chang, Samantha J.; et al. (2024) Transcriptional network dynamics in early T cell development; Journal of Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
Zhang, Mark G.; Seyedolmohadesin, Maedeh; et al. (2024) Sensory integration of food and population density during the diapause exit decision involves insulin-like signaling in Caenorhabditis elegans; Proceedings of the National Academy of Sciences; Vol. 121; No. 40; e2405391121; 10.1073/pnas.2405391121
Lu, Chenyue; Pankaj, Amaya; et al. (2024) HCC spatial transcriptomic profiling reveals significant and potentially targetable cancer-endothelial interactions; Hepatology Communications; Vol. 8; No. 10; e0533; 10.1097/hc9.0000000000000533
Huang, Buwei; Abedi, Mohamad; et al. (2024) Designed endocytosis-inducing proteins degrade targets and amplify signals; Nature; No. 8031; 10.1038/s41586-024-07948-2
Varshavsky, Alexander (2024) N-degron pathways; Proceedings of the National Academy of Sciences; Vol. 121; No. 39; e2408697121; 10.1073/pnas.2408697121
Agrawal, Parul; Knudsen, Maria L.; et al. (2024) Short CDRL1 in intermediate VRC01-like mAbs is not sufficient to overcome key glycan barriers on HIV-1 Env; Journal of Virology; 10.1128/jvi.00744-24
Polonsky, Michal; Gerhardt, Louisa M. S.; et al. (2024) Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease; Nature Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
Coppinger, Macey; Liu, Yang; et al. (2024) Transient infection of Euprymna scolopes with an engineered D-alanine auxotroph of Vibrio fischeri; Applied and Environmental Microbiology; e01298-24; 10.1128/aem.01298-24
Iton, Zachery W. B.; Irving-Singh, Zion; et al. (2024) Modular MPS₃-Based Frameworks for Superionic Conduction of Monovalent and Multivalent Ions; Journal of the American Chemical Society; Vol. 146; No. 35; 24398–24414; 10.1021/jacs.4c06263
Flamholz, Avi I.; Goldford, Joshua E.; et al. (2024) Annotation-free prediction of microbial dioxygen utilization; mSystems; e00763-24; 10.1128/msystems.00763-24
Bugacov, Helena; Der, Balint; et al. (2024) Dose-dependent responses to canonical Wnt transcriptional complexes in the regulation of mammalian nephron progenitors; Development; Vol. 151; No. 18; dev202279; 10.1242/dev.202279
Der, Balint; Bugacov, Helena; et al. (2024) Cadherin Adhesion Complexes Direct Cell Aggregation in the Epithelial Transition of Wnt-Induced Nephron Progenitor Cells; Development; Vol. 151; No. 18; dev202303; 10.1242/dev.202303
Niu, Xubo; Melendez, Delmy L.; et al. (2024) A conserved transcription factor regulatory program promotes tendon fate; Developmental Cell; Vol. 59; 1-18; 10.1016/j.devcel.2024.08.006
Zhang, Oumeng; Alcalde, Reinaldo E.; et al. (2024) Investigating 3D microbial community dynamics of the rhizosphere using quantitative phase and fluorescence microscopy; Proceedings of the National Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
Kim, Sunghyun; Koppitch, Kari; et al. (2024) Comparative single-cell analyses identify shared and divergent features of human and mouse kidney development; Developmental Cell; 10.1016/j.devcel.2024.07.013
Dong, Zhenyu; Mahler, Simon; et al. (2024) Non-invasive laser speckle contrast imaging (LSCI) of extra-embryonic blood vessels in intact avian eggs at early developmental stages; Biomedical Optics Express; Vol. 15; No. 8; 4605-4624; 10.1364/boe.530366
Garibyan, Mher; Hoffman, Tyler; et al. (2024) Engineering programmable material-to-cell pathways via synthetic notch receptors to spatially control differentiation in multicellular constructs; Nature Communications; Vol. 15; 5891; PMCID PMC11246427; 10.1038/s41467-024-50126-1
Kitchen, Sheila A.; Naragon, Thomas H.; et al. (2024) The genomic and cellular basis of biosynthetic innovation in rove beetles; Cell; Vol. 187; No. 14; 1-22; 10.1016/j.cell.2024.05.012
Treidel, Lisa A.; Deem, Kevin D.; et al. (2024) Insect Flight: State of the Field and Future Directions; Integrative And Comparative Biology; icae106; 10.1093/icb/icae106
Hanley, Deirdre; Li, Zi-Qi; et al. (2024) Stereospecific Enzymatic Conversion of Boronic Acids to Amines; Journal of the American Chemical Society; 10.1021/jacs.4c04190
Tseropoulos, Georgios; Mehrotra, Pihu; et al. (2024) Immobilized NRG1 Accelerates Neural Crest like Cell Differentiation Toward Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ Nuclear Translocation; Advanced Science; 2402607; 10.1002/advs.202402607
Yin, Siyuan; Cao, Ruizhi; et al. (2024) Can deep neural networks work with amplitude and phase input of defocused images?; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
Zhang, Oumeng; Dahlquist, Nic; et al. (2024) Long-term imaging of three-dimensional hyphal development using the ePetri dish; Biomedical Optics Express; Vol. 15; No. 7; 4292-4299; 10.1364/boe.530483
Lamorie-Foote, Krista; Kramer, Daniel R.; et al. (2024) Primary somatosensory cortex organization for engineering artificial somatosensation; Neuroscience Research; Vol. 204; 1-13; 10.1016/j.neures.2024.01.005
Azevedo, Anthony; Lesser, Ellen; et al. (2024) Connectomic reconstruction of a female Drosophila ventral nerve cord; Nature; 10.1038/s41586-024-07389-x
Lesser, Ellen; Azevedo, Anthony W.; et al. (2024) Synaptic architecture of leg and wing premotor control networks in Drosophila; Nature; 10.1038/s41586-024-07600-z
Cervantes Rincón, Tomás; Kapoor, Tania; et al. (2024) Human antibodies in Mexico and Brazil neutralizing tick-borne flaviviruses; Cell Reports; Vol. 43; No. 6; 114298; 10.1016/j.celrep.2024.114298
Han, Yanting and Adolphs, Ralph (2024) A shared structure for emotion experiences from narratives, videos and everyday life; iScience; 110378; 10.1016/j.isci.2024.110378
Sperling, Alexis L.; Fabian, Daniel K.; et al. (2024) Protocol for preparing Drosophila genomic DNA to create chromosome-level de novo genome assemblies; STAR Protocols; Vol. 5; No. 2; 102974; PMCID PMC11002874; 10.1016/j.xpro.2024.102974
Tan, Chieh-Hsiang; Wang, Ting-Yu; et al. (2024) Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
Wang, Renée Z.; Lonergan, Zachery R.; et al. (2024) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; e2319960121; 10.1073/pnas.2319960121
Oberhofer, Georg; Johnson, Michelle L.; et al. (2024) Cleave and Rescue gamete killers create conditions for gene drive in plants; Nature Plants; 10.1038/s41477-024-01701-3
Malet, Karim; Faure, Emmanuel; et al. (2024) Intracellular Pseudomonas aeruginosa within the Airway Epithelium of Cystic Fibrosis Lung Tissues; American Journal of Respiratory and Critical Care Medicine; Vol. 209; No. 12; 1453-1462; 10.1164/rccm.202308-1451oc
Sullivan, Delaney K. and Pachter, Lior (2024) Flexible parsing, interpretation, and editing of technical sequences with splitcode; Bioinformatics; Vol. 40; No. 6; btae331; PMCID PMC11193061; 10.1093/bioinformatics/btae331
Zernicka-Goetz, Magdalena and Hyun, Insoo (2024) Embryo models need consistent ethical oversight; Nature; Vol. 630; No. 8016; 305; 10.1038/d41586-024-01728-8
Dorff, Tanya B.; Blanchard, M. Suzette; et al. (2024) PSCA-CAR T cell therapy in metastatic castration-resistant prostate cancer: a phase 1 trial; Nature Medicine; 10.1038/s41591-024-02979-8
Pardo-Palacios, Francisco J.; Wang, Dingjie; et al. (2024) Systematic assessment of long-read RNA-seq methods for transcript identification and quantification; Nature Methods; 10.1038/s41592-024-02298-3
Huang, Biao; Zeng, Zipeng; et al. (2024) Long-term expandable mouse and human-induced nephron progenitor cells enable kidney organoid maturation and modeling of plasticity and disease; Cell Stem Cell; Vol. 31; No. 6; 921-939.e17; 10.1016/j.stem.2024.04.002
Huycke, Tyler R.; Häkkinen, Teemu J.; et al. (2024) Patterning and folding of intestinal villi by active mesenchymal dewetting; Cell; Vol. 187; No. 12; 3072-3089.e20; 10.1016/j.cell.2024.04.039
Pang, Marion; Jones, Jeff J.; et al. (2024) Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples; Journal of Proteome Research; 10.1021/acs.jproteome.4c00062
Cao, Ruizhi; Shen, Cheng; et al. (2024) High-resolution, large field-of-view label-free imaging via aberration-corrected, closed-form complex field reconstruction; Nature Communications; Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
Yang, Liu; Lawhorn, Susannah; et al. (2024) Bacterial growth dynamics in a rhythmic symbiosis; Molecular Biology of the Cell; Vol. 35; No. 6; ar79; 10.1091/mbc.e24-01-0044
Kim, Jane H.; Dong, Julianna; et al. (2024) Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity; Antioxidants; Vol. 13; No. 6; 655; PMCID PMC11200925; 10.3390/antiox13060655
Rangone, Hélène; Bond, Laura; et al. (2024) Greatwall-Endos-PP2A/B55ᵀʷᶦⁿˢ network regulates translation and stability of maternal transcripts in the Drosophila oocyte-to-embryo transition; Open Biology; Vol. 14; No. 6; 240065; 10.1098/rsob.240065
Lo, Yu-Li; Li, Ching-Yao; et al. (2024) Exploring in vivo combinatorial chemo-immunotherapy: Addressing p97 suppression and immune reinvigoration in pancreatic cancer with tumor microenvironment-responsive nanoformulation; Biomedicine & Pharmacotherapy; Vol. 175; 116660; 10.1016/j.biopha.2024.116660
Sierra, Noemie; Olsman, Noah; et al. (2024) A novel approach to comparative RNA-Seq does not support a conserved set of orthologs underlying animal regeneration; Genome Biology and Evolution; Vol. 16; No. 6; evae120; PMCID PMC11214158; 10.1093/gbe/evae120
Rabut, Claire; Norman, Sumner L.; et al. (2024) Functional ultrasound imaging of human brain activity through an acoustically transparent cranial window; Science Translational Medicine; Vol. 16; No. 749; eadj3143; 10.1126/scitranslmed.adj3143
Panda, Pallavi; Ladinsky, Mark S.; et al. (2024) 9-fold symmetry is not essential for centriole elongation and formation of new centriole-like structures; Nature Communications; Vol. 15; 4467; PMCID PMC11127918; 10.1038/s41467-024-48831-y
Zhu, Meng; Meglicki, Maciej; et al. (2024) Tead4 and Tfap2c generate bipotency and a bistable switch in totipotent embryos to promote robust lineage diversification; Nature Structural & Molecular Biology; 10.1038/s41594-024-01311-9
Junyent, Sergi; Meglicki, Maciej; et al. (2024) The first two blastomeres contribute unequally to the human embryo; Cell; Vol. 187; No. 11; 2838-2854.e17; 10.1016/j.cell.2024.04.029
Xia, Shiyu; Lu, Andrew C.; et al. (2024) Synthetic protein circuits for programmable control of mammalian cell death; Cell; Vol. 187; No. 11; 2785-2800.e16; PMCID PMC11127782; 10.1016/j.cell.2024.03.031
Neumann, Adam P.; Sage, Eric; et al. (2024) A Hybrid Orbitrap‐Nanoelectromechanical Systems Approach to Analysis of Individual, Intact Proteins in Real Time; Angewandte Chemie International Edition; e202317064; 10.1002/anie.202317064
Bou Daher, Firas; Serra, Leo; et al. (2024) Xyloglucan deficiency leads to a reduction in turgor pressure and changes in cell wall properties, affecting early seedling establishment; Current Biology; Vol. 34; No. 10; 2094-2106.e6; PMCID PMC11111339; 10.1016/j.cub.2024.04.016
Castellaneta, Andrea; Losito, Ilario; et al. (2024) Lipidomics reveals the reshaping of the mitochondrial phospholipid profile in cells lacking OPA1 and Mitofusins; Journal of Lipid Research; 100563; 10.1016/j.jlr.2024.100563
Sun, Jingjing; Durmaz, Ayse Damla; et al. (2024) Two sequential gene expression programs bridged by cell division support long-distance collective cell migration; Development; Vol. 151; No. 10; dev202262; PMCID PMC11165717; 10.1242/dev.202262
Laubscher, Emily; Wang, Xuefei (Julie); et al. (2024) Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning; Cell Systems; Vol. 15; No. 5; 475-482.e6; 10.1016/j.cels.2024.04.006
Bosch, Thomas C. G.; Wigley, Mark; et al. (2024) The potential importance of the built-environment microbiome and its impact on human health; Proceedings of the National Academy of Sciences; Vol. 121; No. 20; e2313971121; PMCID PMC11098107; 10.1073/pnas.2313971121
She, Liang; Benna, Marcus K.; et al. (2024) Temporal multiplexing of perception and memory codes in IT cortex; Nature; Vol. 629; No. 8013; 861-868
Almhjell, Patrick J.; Johnston, Kadina E.; et al. (2024) The β-subunit of tryptophan synthase is a latent tyrosine synthase; Nature Chemical Biology; 10.1038/s41589-024-01619-z
Wandelt, Sarah K.; Bjånes, David A.; et al. (2024) Representation of internal speech by single neurons in human supramarginal gyrus; Nature Human Behaviour; 10.1038/s41562-024-01867-y
Bhat, Prashant; Chow, Amy; et al. (2024) Genome organization around nuclear speckles drives mRNA splicing efficiency; Nature; 10.1038/s41586-024-07429-6
Hills, Rory A.; Tan, Tiong Kit; et al. (2024) Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses; Nature Nanotechnology; 10.1038/s41565-024-01655-9
Bosch, Thomas C. G.; Blaser, Martin J.; et al. (2024) A new lexicon in the age of microbiome research; Philosophical Transactions of the Royal Society B: Biological Sciences; Vol. 379; No. 1901; 20230060; PMCID PMC10945402; 10.1098/rstb.2023.0060
Yamashita, Shun-ichi; Sugiura, Yuki; et al. (2024) Mitophagy mediated by BNIP3 and NIX protects against ferroptosis by downregulating mitochondrial reactive oxygen species; Cell Death & Differentiation; Vol. 31; No. 5; 651-661; PMCID PMC11094013; 10.1038/s41418-024-01280-y
Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical limits of energy extraction in active fluids; Physical Review Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
Sternberg, Paul W.; Van Auken, Kimberly; et al. (2024) WormBase 2024: status and transitioning to Alliance infrastructure; Genetics; Vol. 227; No. 1; iyae050; PMCID PMC11075546; 10.1093/genetics/iyae050
Sato, Nanami; Rosa, Viviane S.; et al. (2024) Basal delamination during mouse gastrulation primes pluripotent cells for differentiation; Developmental Cell; Vol. 59; No. 10; 1252-1268.e13; 10.1016/j.devcel.2024.03.008
Wright, Adam; Wilkinson, Mark D.; et al. (2024) FAIR Header Reference genome: a TRUSTworthy standard; Briefings in Bioinformatics; Vol. 25; No. 3; bbae122; PMCID PMC10981671; 10.1093/bib/bbae122
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St-Jacques, B.; Dassule, H.R.; et al. (1998) Sonic hedgehog signaling is essential for hair development; Current Biology; Vol. 8; No. 19; 1058-1069; 10.1016/s0960-9822(98)70443-9
Yang, Yingzi; Guillot, Pascale; et al. (1998) Evidence that preaxial polydactyly in the Doublefoot mutant is due to ectopic Indian Hedgehog signaling; Development; Vol. 125; No. 16; 3123-3132; 10.1242/dev.125.16.3123
Rowitch, David H.; Echelard, Yann; et al. (1998) Identification of an evolutionarily conserved 110 base-pair cis-acting regulatory sequence that governs Wnt-1 expression in the murine neural plate; Development; Vol. 125; No. 14; 2735-2746; 10.1242/dev.125.14.2735
Danielian, Paul S.; Echelard, Yann; et al. (1997) A 5.5-kb Enhancer Is both Necessary and Sufficient for Regulation of Wnt-1Transcription in Vivo; Developmental Biology; Vol. 192; No. 2; 300-309; 10.1006/dbio.1997.8762
Tabin, Clifford J. and McMahon, Andrew P. (1997) Recent advances in hedgehog signalling; Trends in Cell Biology; Vol. 7; No. 11; 442-446; 10.1016/s0962-8924(97)01159-8
Lee, Scott M. K.; Danielian, Paul S.; et al. (1997) Evidence that FGF8 signalling from the midbrain-hindbrain junction regulates growth and polarity in the developing midbrain; Development; Vol. 124; No. 5; 959-969; 10.1242/dev.124.5.959
Yoshikawa, Yoshiaki; Fujimori, Toshihiko; et al. (1997) Evidence That Absence of Wnt-3a Signaling Promotes Neuralization Instead of Paraxial Mesoderm Development in the Mouse; Developmental Biology; Vol. 183; No. 2; 234-242; 10.1006/dbio.1997.8502
Hammerschmidt, Matthias; Brook, Adam; et al. (1997) The world according to bedgebog; Trends in Genetics; Vol. 13; No. 1; 14-21; 10.1016/s0168-9525(96)10051-2
van Bokhoven, H.; Kissing, J.; et al. (1997) Assignment of WNT7B to human chromosome band 22q13 by in situ hybridization; Cytogenetic and Genome Research; Vol. 77; No. 3-4; 288-289; 10.1159/000134600
Kispert, Andreas; Vainio, Seppo; et al. (1996) Proteoglycans are required for maintenance of Wnt-11 expression in the ureter tips; Development; Vol. 122; No. 11; 3627-3637; 10.1242/dev.122.11.3627
Serbedzija, George Nicolaus; Dickinson, Mary; et al. (1996) Cell death in the CNS of the Wnt-1 mutant mouse; Journal of Neurobiology; Vol. 31; No. 3; 275-282; 10.1002/(SICI)1097-4695(199611)31:3%3C275::AID-NEU1%3E3.0.CO;2-7
Hammerschmidt, M; Serbedzija, G N; et al. (1996) Genetic analysis of dorsoventral pattern formation in the zebrafish: requirement of a BMP-like ventralizing activity and its dorsal repressor.; Genes and Development; Vol. 10; No. 19; 2452-2461; 10.1101/gad.10.19.2452
St-Jacques, Benoit and McMahon, Andrew P (1996) Early mouse development: lessons from gene targeting; Current Opinion in Genetics and Development; Vol. 6; No. 4; 439-444; 10.1016/s0959-437x(96)80065-7
Zhang, Jian; Hagopian-Donaldson, Stephanie; et al. (1996) Neural tube, skeletal and body wall defects in mice lacking transcription factor AP-2; Nature; Vol. 381; No. 6579; 238-241; 10.1038/381238a0
Hammerschmidt, M; Bitgood, M J; et al. (1996) Protein kinase A is a common negative regulator of Hedgehog signaling in the vertebrate embryo; Genes and Development; Vol. 10; No. 6; 647-658; 10.1101/gad.10.6.647
Münsterberg, A E; Kitajewski, J; et al. (1995) Combinatorial signaling by Sonic hedgehog and Wnt family members induces myogenic bHLH gene expression in the somite; Genes and Development; Vol. 9; No. 23; 2911-2922; 10.1101/gad.9.23.2911
Burrus, Laura W. and McMahon, Andrew P. (1995) Biochemical Analysis of Murine Wnt Proteins Reveals both Shared and Distinct Properties; Experimental Cell Research; Vol. 220; No. 2; 363-373; 10.1006/excr.1995.1327
Hollyday, Margaret; McMahon, Jill A.; et al. (1995) Wnt expression patterns in chick embryo nervous system; Mechanisms of Development; Vol. 52; No. 1; 9-25; 10.1016/0925-4773(95)00385-e
Dickinson, Mary E.; Selleck, Mark A. J.; et al. (1995) Dorsalization of the neural tube by the non-neural ectoderm; Development; Vol. 121; No. 7; 2099-2106
Bumcrot, David A. and McMahon, Andrew P. (1995) Somite Differentiation: Sonic signals somites; Current Biology; Vol. 5; No. 6; 612-614; 10.1016/s0960-9822(95)00123-0
Shimamura, Kenji; Hirano, Shinji; et al. (1994) Wnt-1-dependent regulation of local E-cadherin and αN-catenin expression in the embryonic mouse brain; Development; Vol. 120; No. 8; 2225-2234; 10.1242/dev.120.8.2225
Smolich, B D; McMahon, J A; et al. (1993) Wnt family proteins are secreted and associated with the cell surface.; Molecular Biology of the Cell; Vol. 4; No. 12; 1267-1275; 10.1091/mbc.4.12.1267
Parr, Brian A.; Shea, Martin J.; et al. (1993) Mouse Wnt genes exhibit discrete domains of expression in the early embryonic CNS and limb buds; Development; Vol. 119; No. 1; 247-261; 10.1242/dev.119.1.247
McMahon, Andrew P. (1993) Cell signalling in induction and anterior-posterior patterning of the vertebrate central nervous system; Current Opinion in Neurobiology; Vol. 3; No. 1; 4-7; 10.1016/0959-4388(93)90027-v
McMahon, A.P.; Joyner, A.L.; et al. (1992) The midbrain-hindbrain phenotype of Wnt-1−Wnt-1− mice results from stepwise deletion of engrailed-expressing cells by 9.5 days postcoitum; Cell; Vol. 69; No. 4; 581-595; 10.1016/0092-8674(92)90222-x
McMahon, Andrew P.; Champion, Janet E.; et al. (1990) Developmental expression of the putative transcription factor Egr-1 suggests that Egr-1 and c-fos are coregulated in some tissues; Development; Vol. 108; No. 2; 281-287; 10.1242/dev.108.2.281
McMahon, Jill A. and McMahon, Andrew P. (1989) Nucleotide sequence, chromosomal localization and developmental expression of the mouse int-1-related gene; Development; Vol. 107; No. 3; 643-650; 10.1242/dev.107.3.643
Wilkinson, D. G.; Peters, G.; et al. (1988) Expression of the FGF-related proto-oncogene int-2 during gastrulation and neurulation in the mouse.; The EMBO Journal; Vol. 7; No. 3; 691-695; 10.1002/j.1460-2075.1988.tb02864.x
McMahon, Andrew P. and Moon, Randall T. (1987) Structure and evolution of a non-erythroid spectrin, human α-fodrin; Biochemical Society Transactions; Vol. 15; No. 5; 804-807; 10.1042/bst0150804
Moon, Randall T. and McMahon, Andrew P. (1987) Composition and expression of spectrin‐based membrane skeletons in non‐erythroid cells; BioEssays; Vol. 7; No. 4; 159-164; 10.1002/bies.950070405
Wilkinson, David G.; Bailes, Juliet A.; et al. (1987) Expression of the proto-oncogene int-1 is restricted to specific neural cells in the developing mouse embryo; Cell; Vol. 50; No. 1; 79-88; 10.1016/0092-8674(87)90664-7
McMahon, Andrew P.; Giebelhaus, Dawn H.; et al. (1987) cDNA cloning, sequencing and chromosome mapping of a non-erythroid spectrin, human α-fodrin; Differentiation; Vol. 34; No. 1; 68-78; 10.1111/j.1432-0436.1987.tb00052.x
Flytzanis, Constantin N.; McMahon, Andrew P.; et al. (1985) Persistence and Integration of Cloned DNA in Postembryonic Sea Urchins; Developmental Biology; Vol. 108; No. 2; 431-442; 10.1016/0012-1606(85)90046-6
McMahon, Andrew P.; Flytzanis, Constantin N.; et al. (1985) Introduction of Cloned DNA into Sea Urchin Egg Cytoplasm: Replication and Persistence during Embryogenesis; Developmental Biology; Vol. 108; No. 2; 420-430; 10.1016/0012-1606(85)90045-4
McMahon, A. P.; Novak, T. J.; et al. (1984) Inducible expression of a cloned heat shock fusion gene in sea urchin embryos; Proceedings of the National Academy of Sciences of the United States of America; Vol. 81; No. 23; 7490-7494; PMCID PMC392172
McMahon, A. P.; Novak, T. J.; et al. (1984) Inducible expression of a cloned heat shock fusion gene in sea urchin embryos.; Proceedings of the National Academy of Sciences; Vol. 81; No. 23; 7490-7494; 10.1073/pnas.81.23.7490
McMahon, A.; Fosten, M.; et al. (1983) X-chromosome inactivation mosaicism in the three germ layers and the germ line of the mouse embryo; Journal of Embryology and Experimental Morphology; Vol. 74; 207-220