Division of Biology and Biological Engineering (BBE)

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Articles from CaltechAUTHORS

Hill, Andrew J.; Eliopoulos, Olivia; et al. (2026) Melatonin promotes sleep by suppressing responses to visual stimuli via MT1 receptors; Current Biology; Vol. 36; No. 9; 1-15; 10.1016/j.cub.2026.03.059
Griffiths, Jessica A.; Nirmalkar, Khemlal; et al. (2026) The gut microbiome shapes social behaviour across animal species; Nature Reviews Microbiology; Vol. 24; 328-343; 10.1038/s41579-025-01262-y
Fornace, Mark E.; Huang, Jining; et al. (2026) NUPACK: Computational Nucleic Acid Analysis and Design; ACS Synthetic Biology; Vol. 15; No. 4; 1426-1441; 10.1021/acssynbio.5c00817
Guo, Yongzhao; Utter, Daniel R.; et al. (2026) Carbon monoxide oxidation expands the known metabolic capacity in anaerobic methanotrophic consortia; Nature Communications; Vol. 17; No. 1; 3461; PMCID PMC13079720; 10.1038/s41467-026-71433-9
Moiseyenko, Anastasiya; Antonello, Giacomo; et al. (2026) Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice; npj Parkinson’s Disease; Vol. 12; No. 1; 94; PMCID PMC13077053; 10.1038/s41531-026-01287-x
Ciemniecki, John A.; Glasser, Nathaniel R.; et al. (2026) mGem: Facilitated fermentation—an underappreciated mode of energy conservation; mBio; Vol. 17; No. 4; e02494-25; PMCID PMC13059778; 10.1128/mbio.02494-25
Wexler, Helen E.; Dunitz, Madison I.; et al. (2026) Algal Biomaterials From Recycled Wastewater Biomass; Journal of Polymer Science; Vol. 64; No. 7; 1583-1595; 10.1002/pol.20250915
Cheng, Yi-Ting and Mazmanian, Sarkis K. (2026) Gut microbes affect cognition during ageing; Nature; Vol. 652; No. 8109; 304-305; 10.1038/d41586-026-00492-1
Shan, Xiaoyu; Cao, Karen; et al. (2026) Drought drives elevated antibiotic resistance across soils; Nature Microbiology; Vol. 11; 867-876; 10.1038/s41564-026-02274-x
Alvarez-Sanchez, Maria; Martinez-Hernandez, Francisco; et al. (2026) Illuminating the newly produced viruses within the virosphere with bioorthogonal noncanonical amino acid tagging and single-virus genomic sequencing technologies; ISME Communications; Vol. 6; No. 1; ycag048; 10.1093/ismeco/ycag048
Kuwabara, Jill T.; Beilinson, Vera; et al. (2026) SypC, a symbiont outer membrane vesicle protein, impacts the development of the squid–vibrio partnership; Proceedings of the National Academy of Sciences; Vol. 123; No. 11; e2524648123; PMCID PMC12994190; 10.1073/pnas.2524648123
Hao, Kai; Liu, Yunzheng; et al. (2026) Genetic recording and in situ readout of single-cell signaling memory; Nature Chemical Biology; 10.1038/s41589-026-02168-3
MacKrell, Elliot J.; Lomenick, Brett; et al. (2026) Global analysis of protein degradation reveals instability of diverse regulators in Escherichia coli; Proceedings of the National Academy of Sciences; Vol. 123; No. 10; e2515265123; 10.1073/pnas.2515265123
Alvarez-Sanchez, Maria; Martinez-Hernandez, Francisco; et al. (2026) Illuminating the newly produced viruses within the virosphere with BONCAT and single virus genomic sequencing technologies; ISME Communications; ycag048; 10.1093/ismeco/ycag048
Moiseyenko, Anastasiya; Antonello, Giacomo; et al. (2026) Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice; npj Parkinson’s Disease; 10.1038/s41531-026-01287-x
Liang, Mingshu; Zernicka-Goetz, Magdalena; et al. (2026) Using deep learning to predict the sex of human embryos; Open Biology; Vol. 16; No. 3; 250419; 10.1098/rsob.250419
Vassallo, Reid; Ling, Bill; et al. (2026) A Modular Method for Rapidly Prototyping Targeted Gas Vesicle Protein Nanoparticles; Bioconjugate Chemistry; Vol. 37; No. 2; 225-232; 10.1021/acs.bioconjchem.5c00387
Zernicka-Goetz, Magdalena (2026) John Gurdon 1933–2025; Nature Biotechnology; Vol. 44; 181–182; 10.1038/s41587-026-03015-5
Jorgensen, Victoria; Bao, Min; et al. (2026) Efficient stem cell-derived mouse embryo models for environmental studies; Developmental Cell; Vol. 61; No. 1; 193-207.e6; 10.1016/j.devcel.2025.08.004
Lambert, Théophile; Tavakoli, Amin; et al. (2026) Sequence-based generative AI design of versatile tryptophan synthases; Nature Communications; Vol. 17; No. 1; 1680; PMCID PMC12909874; 10.1038/s41467-026-68384-6
Zhu, Qin; Jiang, Zuzhi; et al. (2026) Revealing a coherent cell-state landscape across single-cell datasets with CONCORD; Nature Biotechnology; 10.1038/s41587-025-02950-z
de Castro Fonseca, Matheus; Zanetti, Letizia; et al. (2026) The gut microbiome, systemic inflammation, and autoimmunity in Parkinson’s disease; Lancet Neurology; Vol. 25; No. 1; 103-114; 10.1016/S1474-4422(25)00382-5
Olson, Blade A.; Huey-Tubman, Kathryn E.; et al. (2025) Recruiting ESCRT to single-chain heterotrimer peptide MHCI releases antigen-presenting vesicles that stimulate T cells selectively; Proceedings of the National Academy of Sciences; Vol. 122; No. 51; e2501046122; PMCID PMC12745732; 10.1073/pnas.2501046122
Lamba, Adiyant; Zhu, Meng; et al. (2025) Asynchronous mouse embryo polarization leads to heterogeneity in cell fate specification; eLife; Vol. 13; RP101140; 10.7554/elife.101140
Iwamoto-Stohl, Lisa K.; Petelski, Aleksandra A.; et al. (2025) Fertilization triggers early proteomic symmetry breaking in mammalian embryos; Cell; 10.1016/j.cell.2025.11.006
Nair, Aditya; Vinograd, Amit; et al. (2025) The neural computation of affective internal states in the hypothalamus: A dynamical systems perspective; Neuron; Vol. 113; No. 23; 3887-3907; 10.1016/j.neuron.2025.11.003
Rosenberg, Yuval; Wiedenhofer, Dominik; et al. (2025) Human biomass movement exceeds the biomass movement of all land animals combined; Nature Ecology & Evolution; Vol. 16; 8338; 10.1038/s41559-025-02863-9
Jung, Taesung; Zeng, Nanyu; et al. (2025) A wireless subdural-contained brain–computer interface with 65,536 electrodes and 1,024 channels; Nature Electronics; Vol. 8; No. 12; 1272-1288; 10.1038/s41928-025-01509-9
Chitayat, Liyam; Collison, W. Nate; et al. (2025) Extended phenotypes: a new generation; Trends in Genetics; Vol. 41; No. 12; 1035-1045; 10.1016/j.tig.2025.10.004
Stundl, Jan and Bronner, Marianne E. (2025) Tempting fate: Neural crest induction along the body axis; Cells & Development; Vol. 184; 204000; 10.1016/j.cdev.2025.204000
Christiaen, Lionel (2025) The tunicate Ciona; Nature Methods; Vol. 22; No. 12; 2467-2469; 10.1038/s41592-025-02936-4
Wei, Xiao; Salvador-Martinez, Irepan; et al. (2025) Role of CEBPa in trophectoderm competence installment; Science Advances; Vol. 11; No. 48; eady1693; PMCID PMC12662221; 10.1126/sciadv.ady1693
Altshuller, Maria; He, Xu; et al. (2025) The Fanconi anemia pathway repairs colibactin-induced DNA interstrand cross-links; Nature Communications; Vol. 16; No. 1; 10563; PMCID PMC12657977; 10.1038/s41467-025-65606-1
Liu, Ann; Farooq, Abdullah S.; et al. (2025) Thermally Controlled State Switches for Engineered Macrophages; ACS Synthetic Biology; Vol. 14; No. 11; 4304-4313; PMCID PMC12645579; 10.1021/acssynbio.5c00395
Felce, Catherine; Liorsdóttir, Steinunn; et al. (2025) Analogies between the virial theorem and the Price equation; Physical Review E; Vol. 112; No. 5; 54139; 10.1103/r8bd-lhm3
Shalvarjian, Katie E.; Chadwick, Grayson L.; et al. (2025) Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage; Proceedings of the National Academy of Sciences; Vol. 122; No. 45; e2517473122; PMCID PMC12626013; 10.1073/pnas.2517473122
Phillips, Rob (2025) Approximating the living; Seminars in Cell and Developmental Biology; Vol. 175; 103646; 10.1016/j.semcdb.2025.103646
Morais, Livia H.; Stiles, Linsey; et al. (2025) The gut microbiome promotes mitochondrial respiration in the brain of a Parkinson’s disease mouse model; npj Parkinson’s Disease; Vol. 11; 301; PMCID PMC12537952; 10.1038/s41531-025-01142-5
Larsson, Elin M.; Wang, Olivia Y.; et al. (2025) A DNA Part Library for Reliable Engineering of the Emerging Model Nematode Symbiotic Bacterium Xenorhabdus griffiniae HGB2511; ACS Synthetic Biology; Vol. 14; No. 10; 4122-4126; 10.1021/acssynbio.5c00414
Sanchez-Vasquez, Estefania; Bronner, Marianne E; et al. (2025) HIF1A-mediated pathways promote euploid cell survival in chromosomally mosaic embryos; eLife; Vol. 13; RP101912; 10.7554/elife.101912
Squyres, Georgia R. and Newman, Dianne K. (2025) Single-cell lysis patterns morphogenesis of eDNA in the matrix of Pseudomonas aeruginosa biofilms; Proceedings of the National Academy of Sciences; Vol. 122; No. 41; e2514210122; PMCID PMC12541396; 10.1073/pnas.2514210122
Yang, Fan; Liu, Shichen; et al. (2025) Geometry-dependent defect merging induces bifurcated dynamics in active networks; Physical Review Research; Vol. 7; No. 4; L042006; 10.1103/m8cb-gf1q
Wu, Qianying; Hong, Qianhui; et al. (2025) Variability and stability of autistic traits in the general population: A systematic comparison between online and in-lab samples; Personality Neuroscience; Vol. 8; e5; PMCID PMC12516608; 10.1017/pen.2025.10001
Schrunk, Erik; Lee, Sunho; et al. (2025) Sono-uncaging for Spatiotemporal Control of Chemical Reactivity; Journal of the American Chemical Society; Vol. 147; No. 39; 35422-35430; 10.1021/jacs.5c09181
Wang, Tongtong; Tufenkjian, Avedis; et al. (2025) Molecular and functional diversity of the autonomic nervous system; Nature Reviews Neuroscience; Vol. 26; No. 10; 607-622; 10.1038/s41583-025-00941-2
Grohganz, Madleen; Leyhr, Jake; et al. (2025) Investigating the Morphogenesis and Replacement of Lamprey Toothlets Using Synchrotron Imaging; Journal of Morphology; Vol. 286; No. 10; e70094; PMCID PMC12541293; 10.1002/jmor.70094
Bostick, John W.; Connerly, T. Jaymie; et al. (2025) Genotype and microbiome shape immunity in a sex-specific manner in mouse models of Alzheimer’s disease; Brain, Behavior, and Immunity; Vol. 129; 1014-1027; PMCID PMC12490345; 10.1016/j.bbi.2025.07.028
Soto-Moreno, Edgar J.; Ali, Nourhan N.; et al. (2025) Spindle-localized F-actin regulates polar MTOC organization and the fidelity of meiotic spindle formation; Nature Communications; Vol. 16; No. 1; 8323; 10.1038/s41467-025-63586-w
Mayr, Magdalena J.; Parra, Sergio A.; et al. (2025) Distinct microbial communities within and on seep carbonates support long-term anaerobic oxidation of methane and divergent pMMO diversity; The ISME Journal; Vol. 19; No. 1; wraf153; PMCID PMC12422003; 10.1093/ismejo/wraf153
Rosencrans, William M.; Lee, Ryan W.; et al. (2025) Putative PINK1/Parkin activators lower the threshold for mitophagy by sensitizing cells to mitochondrial stress; Science Advances; Vol. 11; No. 35; ady0240; PMCID PMC12383277; 10.1126/sciadv.ady0240
Buss, Marjorie T.; Zhu, Lian; et al. (2025) Probiotic acoustic biosensors for noninvasive imaging of gut inflammation; Nature Communications; Vol. 16; No. 1; 7931; PMCID PMC12379287; 10.1038/s41467-025-62569-1
Shao, Xiecheng; Chung, Ryan S.; et al. (2025) Directional hand movement can be classified from insular cortex SEEG signals using recurrent neural networks and high-gamma band features; Scientific Reports; Vol. 15; No. 1; 29993; PMCID PMC12357955; 10.1038/s41598-025-14805-3
Rich, Joseph; Le, Jonathan; et al. (2025) Image Imputation with conditional generative adversarial networks captures clinically relevant imaging features on computed tomography; PLOS Digital Health; Vol. 4; No. 8; e0000970; PMCID PMC12349720; 10.1371/journal.pdig.0000970
Aimet, Stefan; Tajik, Mohammadamin; et al. (2025) Experimentally probing Landauer’s principle in the quantum many-body regime; Nature Physics; Vol. 21; 1326-1331; 10.1038/s41567-025-02930-9
Tijerina, Jamie C.; Martinez‐Hernandez, Francisco; et al. (2025) Preparation of Cuvette-Based Sorters for Sorting Submicron Microbial Cells and Viruses from Environmental and Biological Samples; Current Protocols; Vol. 5; No. 8; e70176; 10.1002/cpz1.70176
Zhou, Yixuan D.; Komnick, Macy R.; et al. (2025) Inducible, but not constitutive, pancreatic REG/Reg isoforms are regulated by intestinal microbiota and pancreatic diseases; Mucosal Immunology; Vol. 18; No. 4; 918–936; 10.1016/j.mucimm.2025.05.003
Cheng, Shun-Yang; Koppitch, Kari; et al. (2025) Nfkb1 Removal from Proximal Tubule Cells Improves Renal Tubular Outcomes Following Ischemia Reperfusion Injury; Kidney360; Vol. 6; No. 8; 1292-1304; PMCID PMC12407146; 10.34067/kid.0000000868
DeCastro, Jonalyn; Mehta-Doshi, Ami; et al. (2025) Red Blood Cell-Derived Exosomes as Mediators of Age-Related Neurodegeneration; Rejuvenation Research; Vol. 28; No. 4; 184 - 194; PMCID PMC12315997; 10.1089/rej.2025.0013
Edwards, Rhodri T M; Antoshechkin, Igor; et al. (2025) First transcriptome analysis of the winter tick (Dermacentor albipictus) reveals sex-specific expression patterns and potential targets for genetic control; G3: Genes, Genomes, Genetics; 10.1093/g3journal/jkaf116
Chiu, Hui; Robie, Alice A; et al. (2025) Cell type-specific contributions to a persistent aggressive internal state in female Drosophila; eLife; Vol. 12; RP88598; 10.7554/elife.88598
Green, Neal; LaPorte, Matthew G.; et al. (2025) Antitumor Efficacy of 1,2,4-Triazole-Based VCP/p97 Allosteric Inhibitors; Journal of Medicinal Chemistry; Vol. 68; No. 14; 14465−14494; 10.1021/acs.jmedchem.5c00507
Yang, Tristan; Certano, Amanda; et al. (2025) Genome resource announcement of a Leptodophora sp. fungus isolated from roots of broadleaf plants in Wisconsin, USA; Microbiology Resource Announcements; e00936-24; 10.1128/mra.00936-24
Chen, Dong-Yuan; Claussen, Nikolas H.; et al. (2025) Basement membrane perforations guide anterior–posterior axis formation; Nature Communications; Vol. 16; No. 1; 6763; PMCID PMC12284222; 10.1038/s41467-025-61441-6
Martinez-Garcia, Manuel; Lluesma-Gomez, Monica; et al. (2025) Targeted genomic analysis of a predominant uncultured marine pelagiphage-host model via microfluidics and semipermeable capsule technology; ISME Communications; Vol. 5; No. 1; ycaf123; PMCID PMC12404659; 10.1093/ismeco/ycaf123
Hu, Wenqi; Sancho-Serra, Carmen; et al. (2025) Atlas of amnion development during the first trimester of human pregnancy; Nature Cell Biology; Vol. 27; 1175–1185; 10.1038/s41556-025-01696-9
Lashgari, Elnaz; Chen, Emma; et al. (2025) A systematic review of flotation-restricted environmental stimulation therapy (REST); BMC Complementary Medicine and Therapies; Vol. 25; No. 1; 230; PMCID PMC12224670; 10.1186/s12906-025-04973-0
Ge, Xiaoqian; Wekselblatt, Joseph B.; et al. (2025) In Vivo Cytosolic Delivery of Biomolecules into Neurons for Super‐Resolution Imaging and Genome Modification; Advanced Science; Vol. 12; No. 25; 2501033; PMCID PMC12224921; 10.1002/advs.202501033
Nowicki, Theodore S.; Deen, Nataly Naser Al; et al. (2025) Human cancer-targeted immunity via transgenic hematopoietic stem cell progeny; Nature Communications; Vol. 16; No. 1; 5599; PMCID PMC12219382; 10.1038/s41467-025-60816-z
Das, Alakananda; Qiu, Yanping; et al. (2025) PLAA/UFD-3 regulates P-bodies through its intrinsic disordered domain; Proceedings of the National Academy of Sciences; Vol. 122; No. 26; e2427250122; PMCID PMC12232612; 10.1073/pnas.2427250122
Esfahani, Somayeh G.; Alcalde, Reinaldo E.; et al. (2025) Modeling the Migration and Growth of Shewanella Oneidensis MR‐1 in a Diffusion‐Dominated Microfluidic Gradient Chamber Under the Influence of an Antibiotic Concentration Gradient; Biotechnology and Bioengineering; Vol. 122; No. 7; 1840-1855; 10.1002/bit.28991
Trautmann, Eric M.; Hesse, Janis K.; et al. (2025) Large-scale high-density brain-wide neural recording in nonhuman primates; Nature Neuroscience; Vol. 28; No. 7; 1562-1575; PMCID PMC12229894; 10.1038/s41593-025-01976-5
Dhillon-Richardson, Rekha M.; Haugan, Alexandra K.; et al. (2025) Reactivation of an embryonic cardiac neural crest transcriptional profile during zebrafish heart regeneration; Proceedings of the National Academy of Sciences; Vol. 122; No. 25; e2423697122; PMCID PMC12207451; 10.1073/pnas.2423697122
Woods, Philip H.; Speth, Daan R.; et al. (2025) Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea; Science Advances; Vol. 11; No. 25; eadq5232; PMCID PMC12180501; 10.1126/sciadv.adq5232
Hirokawa, Soichi; Lee, Heun Jin; et al. (2025) Motor-driven microtubule diffusion in a photobleached dynamical coordinate system; Proceedings of the National Academy of Sciences; Vol. 122; No. 24; e2417020122; PMCID PMC12184364; 10.1073/pnas.2417020122
Smith, Steph; Bongrand, Clotilde; et al. (2025) Application of hsp60 amplicon sequencing to characterize microbial communities associated with juvenile and adult Euprymna scolopes squid; ISME Communications; Vol. 5; No. 1; ycaf085; PMCID PMC12166977; 10.1093/ismeco/ycaf085
Pawan, S.J.; Rich, Joseph Matthew; et al. (2025) Deep learning-based detection and segmentation of osseous metastatic prostate cancer lesions on computed tomography; European Journal of Radiology Artificial Intelligence; Vol. 2; 100005; 10.1016/j.ejrai.2025.100005
Zhang, Yameng and Oka, Yuki (2025) Body fluid regulation; Current Opinion in Neurobiology; Vol. 92; 103017; 10.1016/j.conb.2025.103017
Dunipace, Leslie; McGehee, James M; et al. (2025) The proximal enhancer of the snail gene mediates negative autoregulatory feedback in Drosophila melanogaster; Genetics; Vol. 230; No. 2; iyaf058; PMCID PMC12135202; 10.1093/genetics/iyaf058
Liao, Irene T.; Gong, Yan; et al. (2025) The developmental basis of floral nectary diversity and evolution; New Phytologist; Vol. 246; No. 6; 2462-2477; 10.1111/nph.70141
Eitel, Eryn M.; Utter, Daniel R.; et al. (2025) CABO-16S—a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples; NAR Genomics and Bioinformatics; Vol. 7; No. 2; lqaf061; PMCID PMC12086536; 10.1093/nargab/lqaf061
Catanzaro, Nicholas J.; Wu, Ziyan; et al. (2025) ACE2 from Pipistrellus abramus bats is a receptor for HKU5 coronaviruses; Nature Communications; Vol. 16; No. 1; 4932; PMCID PMC12119886; 10.1038/s41467-025-60286-3
Dam, Kim-Marie A.; Gristick, Harry B.; et al. (2025) Mapping essential somatic hypermutations in a CD4-binding site bNAb informs HIV-1 vaccine design; Cell Reports; Vol. 44; No. 5; 115713; PMCID PMC12117015; 10.1016/j.celrep.2025.115713
Fan, Chengcheng; Keeffe, Jennifer R.; et al. (2025) Cross-reactive sarbecovirus antibodies induced by mosaic RBD nanoparticles; Proceedings of the National Academy of Sciences; Vol. 122; No. 21; e2501637122; PMCID PMC12130868; 10.1073/pnas.2501637122
Barnes‐Horowitz, Nora M.; Perez, Omar D.; et al. (2025) Low occasion setter salience results in learning conditional stimulus partial reinforcement instead of occasion setting; Journal of the Experimental Analysis of Behavior; Vol. 123; No. 3; 497 - 513; 10.1002/jeab.70014
Takei, Yodai; Yang, Yujing; et al. (2025) Spatial multi-omics reveals cell-type-specific nuclear compartments; Nature; Vol. 641; 1037–1047; 10.1038/s41586-025-08838-x
Tumuluru, Sravya; Godfrey, James K.; et al. (2025) Integrative genomic analysis of DLBCL identifies immune environments associated with bispecific antibody response; Blood; Vol. 145; No. 21; 2460-2472; 10.1182/blood.2024025355
Choe, Mangyu; Einav, Tal; et al. (2025) Glycolysis model shows that allostery maintains high ATP and limits accumulation of intermediates; Biophysical Journal; Vol. 124; No. 10; 1562-1586; 10.1016/j.bpj.2025.03.037
Zhang, Yan; Deveikis, Matas; et al. (2025) Optimizing Protein Production in the One-Pot PURE System: Insights into Reaction Composition and Expression Efficiency; ACS Synthetic Biology; Vol. 14; No. 5; 1496-1508; 10.1021/acssynbio.4c00779
Hu, Chelsea Y.; McManus, John; et al. (2025) A Portable Arsenic Sensor Integrating Bacillus megaterium with CMOS Technology; ACS Synthetic Biology; Vol. 14; No. 5; 1615-1624; PMCID PMC12090344; 10.1021/acssynbio.4c00895
Bjånes, David A.; Kellis, Spencer; et al. (2025) Quantifying physical degradation alongside recording and stimulation performance of 980 intracortical microelectrodes chronically implanted in three humans for 956-2130 days; Acta Biomaterialia; Vol. 198; 188-206; PMCID PMC12282554; 10.1016/j.actbio.2025.02.030
Yamashita, Shun-ichi; Arai, Ritsuko; et al. (2025) The mitophagy receptors BNIP3 and NIX mediate tight attachment and expansion of the isolation membrane to mitochondria; Journal of Cell Biology; Vol. 224; No. 7; e202408166; 10.1083/jcb.202408166
Youssef, Noor; Gurev, Sarah; et al. (2025) Computationally designed proteins mimic antibody immune evasion in viral evolution; Immunity; 10.1016/j.immuni.2025.04.015
Otjacques, Eve; Jatico, Brandon; et al. (2025) Climate-Driven Warming Disrupts the Symbiosis of Bobtail Squid Euprymna scolopes and the Luminous Bacterium Vibrio fischeri; Global Change Biology; Vol. 31; No. 5; e70243; 10.1111/gcb.70243
Zhu, Mingyuan; Hsu, Che-Wei; et al. (2025) Single-cell transcriptomics reveal how root tissues adapt to soil stress; Nature; 10.1038/s41586-025-08941-z
Kubinski, Hannah C.; Despres, Hannah W.; et al. (2025) Variant mutation G215C in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation; PLOS Biology; Vol. 23; No. 4; e3003115; 10.1371/journal.pbio.3003115
Rodak, Nathan Y.; Tan, Chieh-Hsiang; et al. (2025) A small-scale bacterial-based liquid Culture Method for Steinernema hermaphroditum; microPublication Biology; PMCID PMC12082344; 10.17912/micropub.biology.001549
Luebbert, Laura; Sullivan, Delaney K.; et al. (2025) Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changes; Nature Biotechnology; 10.1038/s41587-025-02614-y
Hay, Bruce A. (2025) Applications and status of gene drive in plants; PLOS Biology; Vol. 23; No. 4; e3003148; 10.1371/journal.pbio.3003148
Gompper, Gerhard; Stone, Howard A; et al. (2025) The 2025 motile active matter roadmap; Journal of Physics: Condensed Matter; Vol. 37; No. 14; 143501; PMCID PMC11836640; 10.1088/1361-648x/adac98
Bartol, Thomas M.; Ordyan, Mariam; et al. (2025) A spatial model of autophosphorylation of CaMKII predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping; Frontiers in Synaptic Neuroscience; Vol. 17; 1547948; 10.3389/fnsyn.2025.1547948
Wu, Qianying; Nakauchi, Shigeki; et al. (2025) A hierarchical trait and state model for decoding dyadic social interactions; Scientific Reports; Vol. 15; No. 1; 11399; 10.1038/s41598-025-95916-9
Zeisler, Zachary R.; Love, Marques; et al. (2025) Consistent hierarchies of single-neuron timescales in mice, macaques and humans; The Journal of Neuroscience; Vol. 45; No. 19; e2155242025; 10.1523/jneurosci.2155-24.2025
Akella, Prithvi; Ahmadi, Mohamadreza; et al. (2025) Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications; IEEE Transactions on Automatic Control; Vol. 70; No. 4; 2180 - 2195
Edens, Brittany M.; Lin, Jason; et al. (2025) Ancient emergence of neuronal heterogeneity in the enteric nervous system of jawless vertebrates; Developmental Biology; Vol. 520; 117-124; 10.1016/j.ydbio.2024.12.020
Brückner, Adrian; Vögeli, Bastian; et al. (2025) Exozymes for Biomanufacturing: Toward Clarity and Precision in the Cell-Free Space; GEN Biotechnology; Vol. 4; No. 2; 66-78; 10.1089/genbio.2025.0008
Kulkarni, Prakash; Porter, Lauren; et al. (2025) Evolving concepts of the protein universe; iScience; Vol. 28; No. 3; 112012; PMCID PMC11926713; 10.1016/j.isci.2025.112012
Coughlin, Gerard M.; Borsos, Máté; et al. (2025) Spatial genomics of AAV vectors reveals mechanism of transcriptional crosstalk that enables targeted delivery of large genetic cargo; Nature Biotechnology; Vol. 43; 10.1038/s41587-025-02565-4
Pollak, Daniel J.; Vahaba, Daniel M.; et al. (2025) Parsing social context in auditory forebrain of male zebra finches; PLOS ONE; Vol. 20; No. 3; e0314795; 10.1371/journal.pone.0314795
Suryawinata, Nadia and Mazmanian, Sarkis K. (2025) Does Gut Microbiome Composition Influence the Efficacy of Psychiatric Drugs?; European Medical Journal; Vol. 10; No. 1; 40-46; 10.33590/emj/cseb2440
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