Division of Biology and Biological Engineering

Articles from CaltechAUTHORS

• Swartwood, Brea (2025) Stability analysis of traveling wave fronts in a model for tumor growth; Nonlinear Analysis: Real World Applications; Vol. 81; 104176; 10.1016/j.nonrwa.2024.104176
• Squyres, Georgia R and Newman, Dianne (2024) Biofilms as more than the sum of their parts: lessons from developmental biology; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
• Shin, Boyoung; Chang, Samantha J.; et el. (2024) Transcriptional network dynamics in early T cell development; Journal of Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
• Varshavsky, Alexander (2024) N-degron pathways; Proceedings of the National Academy of Sciences; Vol. 121; No. 39; e2408697121; 10.1073/pnas.2408697121
• Agrawal, Parul; Knudsen, Maria L.; et el. (2024) Short CDRL1 in intermediate VRC01-like mAbs is not sufficient to overcome key glycan barriers on HIV-1 Env; Journal of Virology; 10.1128/jvi.00744-24
• Polonsky, Michal; Gerhardt, Louisa M. S.; et el. (2024) Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease; Nature Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
• Coppinger, Macey; Liu, Yang; et el. (2024) Transient infection of Euprymna scolopes with an engineered D-alanine auxotroph of Vibrio fischeri; Applied and Environmental Microbiology; e01298-24; 10.1128/aem.01298-24
• Flamholz, Avi I.; Goldford, Joshua E.; et el. (2024) Annotation-free prediction of microbial dioxygen utilization; mSystems; e00763-24; 10.1128/msystems.00763-24
• Der, Balint; Bugacov, Helena; et el. (2024) Cadherin Adhesion Complexes Direct Cell Aggregation in the Epithelial Transition of Wnt-Induced Nephron Progenitor Cells; Development; Vol. 151; No. 18; dev202303; 10.1242/dev.202303
• Zhang, Oumeng; Alcalde, Reinaldo E.; et el. (2024) Investigating 3D microbial community dynamics of the rhizosphere using quantitative phase and fluorescence microscopy; Proceedings of the National Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
• Kim, Sunghyun; Koppitch, Kari; et el. (2024) Comparative single-cell analyses identify shared and divergent features of human and mouse kidney development; Developmental Cell; 10.1016/j.devcel.2024.07.013
• Dong, Zhenyu; Mahler, Simon; et el. (2024) Non-invasive laser speckle contrast imaging (LSCI) of extra-embryonic blood vessels in intact avian eggs at early developmental stages; Biomedical Optics Express; Vol. 15; No. 8; 4605-4624; 10.1364/boe.530366
• Garibyan, Mher; Hoffman, Tyler; et el. (2024) Engineering programmable material-to-cell pathways via synthetic notch receptors to spatially control differentiation in multicellular constructs; Nature Communications; Vol. 15; 5891; PMCID PMC11246427; 10.1038/s41467-024-50126-1
• Kitchen, Sheila A.; Naragon, Thomas H.; et el. (2024) The genomic and cellular basis of biosynthetic innovation in rove beetles; Cell; Vol. 187; No. 14; 1-22; 10.1016/j.cell.2024.05.012
• Treidel, Lisa A.; Deem, Kevin D.; et el. (2024) Insect Flight: State of the Field and Future Directions; Integrative And Comparative Biology; icae106; 10.1093/icb/icae106
• Hanley, Deirdre; Li, Zi-Qi; et el. (2024) Stereospecific Enzymatic Conversion of Boronic Acids to Amines; Journal of the American Chemical Society; 10.1021/jacs.4c04190
• Yin, Siyuan; Cao, Ruizhi; et el. (2024) Can deep neural networks work with amplitude and phase input of defocused images?; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
• Tseropoulos, Georgios; Mehrotra, Pihu; et el. (2024) Immobilized NRG1 Accelerates Neural Crest like Cell Differentiation Toward Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ Nuclear Translocation; Advanced Science; 2402607; 10.1002/advs.202402607
• Zhang, Oumeng; Dahlquist, Nic; et el. (2024) Long-term imaging of three-dimensional hyphal development using the ePetri dish; Biomedical Optics Express; Vol. 15; No. 7; 4292-4299; 10.1364/boe.530483
• Lamorie-Foote, Krista; Kramer, Daniel R.; et el. (2024) Primary somatosensory cortex organization for engineering artificial somatosensation; Neuroscience Research; Vol. 204; 1-13; 10.1016/j.neures.2024.01.005
• Azevedo, Anthony; Lesser, Ellen; et el. (2024) Connectomic reconstruction of a female Drosophila ventral nerve cord; Nature; 10.1038/s41586-024-07389-x
• Lesser, Ellen; Azevedo, Anthony W.; et el. (2024) Synaptic architecture of leg and wing premotor control networks in Drosophila; Nature; 10.1038/s41586-024-07600-z
• Cervantes Rincón, Tomás; Kapoor, Tania; et el. (2024) Human antibodies in Mexico and Brazil neutralizing tick-borne flaviviruses; Cell Reports; Vol. 43; No. 6; 114298; 10.1016/j.celrep.2024.114298
• Han, Yanting and Adolphs, Ralph (2024) A shared structure for emotion experiences from narratives, videos and everyday life; iScience; 110378; 10.1016/j.isci.2024.110378
• Sperling, Alexis L.; Fabian, Daniel K.; et el. (2024) Protocol for preparing Drosophila genomic DNA to create chromosome-level de novo genome assemblies; STAR Protocols; Vol. 5; No. 2; 102974; PMCID PMC11002874; 10.1016/j.xpro.2024.102974
• Tan, Chieh-Hsiang; Wang, Ting-Yu; et el. (2024) Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
• Wang, Renée Z.; Lonergan, Zachery R.; et el. (2024) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; e2319960121; 10.1073/pnas.2319960121
• Oberhofer, Georg; Johnson, Michelle L.; et el. (2024) Cleave and Rescue gamete killers create conditions for gene drive in plants; Nature Plants; 10.1038/s41477-024-01701-3
• Sullivan, Delaney K. and Pachter, Lior (2024) Flexible parsing, interpretation, and editing of technical sequences with splitcode; Bioinformatics; Vol. 40; No. 6; btae331; PMCID PMC11193061; 10.1093/bioinformatics/btae331
• Zernicka-Goetz, Magdalena and Hyun, Insoo (2024) Embryo models need consistent ethical oversight; Nature; Vol. 630; No. 8016; 305; 10.1038/d41586-024-01728-8
• Dorff, Tanya B.; Blanchard, M. Suzette; et el. (2024) PSCA-CAR T cell therapy in metastatic castration-resistant prostate cancer: a phase 1 trial; Nature Medicine; 10.1038/s41591-024-02979-8
• Pardo-Palacios, Francisco J.; Wang, Dingjie; et el. (2024) Systematic assessment of long-read RNA-seq methods for transcript identification and quantification; Nature Methods; 10.1038/s41592-024-02298-3
• Huycke, Tyler R.; Häkkinen, Teemu J.; et el. (2024) Patterning and folding of intestinal villi by active mesenchymal dewetting; Cell; Vol. 187; No. 12; 3072-3089.e20; 10.1016/j.cell.2024.04.039
• Pang, Marion; Jones, Jeff J.; et el. (2024) Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples; Journal of Proteome Research; 10.1021/acs.jproteome.4c00062
• Cao, Ruizhi; Shen, Cheng; et el. (2024) High-resolution, large field-of-view label-free imaging via aberration-corrected, closed-form complex field reconstruction; Nature Communications; Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
• Lo, Yu-Li; Li, Ching-Yao; et el. (2024) Exploring in vivo combinatorial chemo-immunotherapy: Addressing p97 suppression and immune reinvigoration in pancreatic cancer with tumor microenvironment-responsive nanoformulation; Biomedicine & Pharmacotherapy; Vol. 175; 116660; 10.1016/j.biopha.2024.116660
• Kim, Jane H.; Dong, Julianna; et el. (2024) Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity; Antioxidants; Vol. 13; No. 6; 655; PMCID PMC11200925; 10.3390/antiox13060655
• Sierra, Noemie; Olsman, Noah; et el. (2024) A novel approach to comparative RNA-Seq does not support a conserved set of orthologs underlying animal regeneration; Genome Biology and Evolution; Vol. 16; No. 6; evae120; PMCID PMC11214158; 10.1093/gbe/evae120
• Yang, Liu; Lawhorn, Susannah; et el. (2024) Bacterial growth dynamics in a rhythmic symbiosis; Molecular Biology of the Cell; Vol. 35; No. 6; ar79; 10.1091/mbc.e24-01-0044
• Rangone, Hélène; Bond, Laura; et el. (2024) Greatwall-Endos-PP2A/B55ᵀʷᶦⁿˢ network regulates translation and stability of maternal transcripts in the Drosophila oocyte-to-embryo transition; Open Biology; Vol. 14; No. 6; 240065; 10.1098/rsob.240065
• Rabut, Claire; Norman, Sumner L.; et el. (2024) Functional ultrasound imaging of human brain activity through an acoustically transparent cranial window; Science Translational Medicine; Vol. 16; No. 749; eadj3143; 10.1126/scitranslmed.adj3143
• Panda, Pallavi; Ladinsky, Mark S.; et el. (2024) 9-fold symmetry is not essential for centriole elongation and formation of new centriole-like structures; Nature Communications; Vol. 15; 4467; PMCID PMC11127918; 10.1038/s41467-024-48831-y
• Zhu, Meng; Meglicki, Maciej; et el. (2024) Tead4 and Tfap2c generate bipotency and a bistable switch in totipotent embryos to promote robust lineage diversification; Nature Structural & Molecular Biology; 10.1038/s41594-024-01311-9
• Junyent, Sergi; Meglicki, Maciej; et el. (2024) The first two blastomeres contribute unequally to the human embryo; Cell; Vol. 187; No. 11; 2838-2854.e17; 10.1016/j.cell.2024.04.029
• Xia, Shiyu; Lu, Andrew C.; et el. (2024) Synthetic protein circuits for programmable control of mammalian cell death; Cell; Vol. 187; No. 11; 2785-2800.e16; PMCID PMC11127782; 10.1016/j.cell.2024.03.031
• Neumann, Adam P.; Sage, Eric; et el. (2024) A Hybrid Orbitrap‐Nanoelectromechanical Systems Approach to Analysis of Individual, Intact Proteins in Real Time; Angewandte Chemie International Edition; e202317064; 10.1002/anie.202317064
• Bou Daher, Firas; Serra, Leo; et el. (2024) Xyloglucan deficiency leads to a reduction in turgor pressure and changes in cell wall properties, affecting early seedling establishment; Current Biology; Vol. 34; No. 10; 2094-2106.e6; PMCID PMC11111339; 10.1016/j.cub.2024.04.016
• Castellaneta, Andrea; Losito, Ilario; et el. (2024) Lipidomics reveals the reshaping of the mitochondrial phospholipid profile in cells lacking OPA1 and Mitofusins; Journal of Lipid Research; 100563; 10.1016/j.jlr.2024.100563
• Laubscher, Emily; Wang, Xuefei (Julie); et el. (2024) Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning; Cell Systems; Vol. 15; No. 5; 475-482.e6; 10.1016/j.cels.2024.04.006
• Sun, Jingjing; Durmaz, Ayse Damla; et el. (2024) Two sequential gene expression programs bridged by cell division support long-distance collective cell migration; Development; Vol. 151; No. 10; dev202262; PMCID PMC11165717; 10.1242/dev.202262
• She, Liang; Benna, Marcus K.; et el. (2024) Temporal multiplexing of perception and memory codes in IT cortex; Nature; Vol. 629; No. 8013; 861-868
• Bosch, Thomas C. G.; Wigley, Mark; et el. (2024) The potential importance of the built-environment microbiome and its impact on human health; Proceedings of the National Academy of Sciences; Vol. 121; No. 20; e2313971121; PMCID PMC11098107; 10.1073/pnas.2313971121
• Almhjell, Patrick J.; Johnston, Kadina E.; et el. (2024) The β-subunit of tryptophan synthase is a latent tyrosine synthase; Nature Chemical Biology; 10.1038/s41589-024-01619-z
• Wandelt, Sarah K.; Bjånes, David A.; et el. (2024) Representation of internal speech by single neurons in human supramarginal gyrus; Nature Human Behaviour; 10.1038/s41562-024-01867-y
• Bhat, Prashant; Chow, Amy; et el. (2024) Genome organization around nuclear speckles drives mRNA splicing efficiency; Nature; 10.1038/s41586-024-07429-6
• Hills, Rory A.; Tan, Tiong Kit; et el. (2024) Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses; Nature Nanotechnology; 10.1038/s41565-024-01655-9
• Bosch, Thomas C. G.; Blaser, Martin J.; et el. (2024) A new lexicon in the age of microbiome research; Philosophical Transactions of the Royal Society B: Biological Sciences; Vol. 379; No. 1901; 20230060; PMCID PMC10945402; 10.1098/rstb.2023.0060
• Yamashita, Shun-ichi; Sugiura, Yuki; et el. (2024) Mitophagy mediated by BNIP3 and NIX protects against ferroptosis by downregulating mitochondrial reactive oxygen species; Cell Death & Differentiation; Vol. 31; No. 5; 651-661; PMCID PMC11094013; 10.1038/s41418-024-01280-y
• Aghilinejad, Arian and Gharib, Morteza (2024) Assessing pressure wave components for aortic stiffness monitoring through spectral regression learning; European Heart Journal Open; Vol. 4; No. 3; oeae040; PMCID PMC11165314; 10.1093/ehjopen/oeae040
• Wright, Adam; Wilkinson, Mark D.; et el. (2024) FAIR Header Reference genome: a TRUSTworthy standard; Briefings in Bioinformatics; Vol. 25; No. 3; bbae122; PMCID PMC10981671; 10.1093/bib/bbae122
• Sato, Nanami; Rosa, Viviane S.; et el. (2024) Basal delamination during mouse gastrulation primes pluripotent cells for differentiation; Developmental Cell; Vol. 59; No. 10; 1252-1268.e13; 10.1016/j.devcel.2024.03.008
• Aleksander, Suzanne A.; Anagnostopoulos, Anna V.; et el. (2024) Updates to the Alliance of Genome Resources central infrastructure; Genetics; Vol. 227; No. 1; iyae049; PMCID PMC11075569; 10.1093/genetics/iyae049
• Tsypin, Lev M. Z.; Saunders, Scott H.; et el. (2024) Genetically dissecting the electron transport chain of a soil bacterium reveals a generalizable mechanism for biological phenazine-1-carboxylic acid oxidation; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
• Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical limits of energy extraction in active fluids; Physical Review Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
• Sternberg, Paul W.; Van Auken, Kimberly; et el. (2024) WormBase 2024: status and transitioning to Alliance infrastructure; Genetics; Vol. 227; No. 1; iyae050; PMCID PMC11075546; 10.1093/genetics/iyae050
• Wang, Bo; Torok, Zsofia; et el. (2024) Unsupervised restoration of a complex learned behavior after large-scale neuronal perturbation; Nature Neuroscience; 10.1038/s41593-024-01630-6
• Ross, Karen E.; Bastian, Frederic B.; et el. (2024) Perspectives on tracking data reuse across biodata resources; Bioinformatics Advances; Vol. 4; vbae057; PMCID PMC11076920; 10.1093/bioadv/vbae057
• Kim, Na Yeon; He, Junfeng; et el. (2024) Smartphone‐based gaze estimation for in‐home autism research; Autism Research; 10.1002/aur.3140
• Husar, Adam; Ordyan, Mariam; et el. (2024) MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface; PLoS Computational Biology; 10.1371/journal.pcbi.1011800
• Griffiths, Jessica A.; Yoo, Bryan B.; et el. (2024) Peripheral neuronal activation shapes the microbiome and alters gut physiology; Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
• Parker, Joseph (2024) Symbiosis: Did bacteria bias the beetle big bang?; Current Biology; Vol. 34; No. 8; R323-R325; 10.1016/j.cub.2024.03.009
• Edens, Brittany M.; Stundl, Jan; et el. (2024) Neural crest origin of sympathetic neurons at the dawn of vertebrates; Nature; 10.1038/s41586-024-07297-0
• Andersson, Emil; Rothenberg, Ellen V.; et el. (2024) T-cell commitment inheritance—an agent-based multi-scale model; npj Systems Biology and Applications; Vol. 10; 40; PMCID PMC11024127; 10.1038/s41540-024-00368-y
• Daume, Jonathan; Kamiński, Jan; et el. (2024) Control of working memory by phase–amplitude coupling of human hippocampal neurons; Nature; 10.1038/s41586-024-07309-z
• Melis, Johan M.; Siwanowicz, Igor; et el. (2024) Machine learning reveals the control mechanics of an insect wing hinge; Nature; 10.1038/s41586-024-07293-4
• Magkiriadou, Sofia; Stepp, Willi L.; et el. (2024) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
• Ding, Xiaozhe; Chen, Xinhong; et el. (2024) Fast, accurate ranking of engineered proteins by target-binding propensity using structure modeling; Molecular Therapy; 10.1016/j.ymthe.2024.04.003
• Guo, Jimmy K.; Blanco, Mario R.; et el. (2024) Denaturing purifications demonstrate that PRC2 and other widely reported chromatin proteins do not appear to bind directly to RNA in vivo; Molecular Cell; Vol. 84; No. 7; 1271-1289.e12; PMCID PMC10997485; 10.1016/j.molcel.2024.01.026
• Wallach, Izhar; Bernard, Denzil; et el. (2024) AI is a viable alternative to high throughput screening: a 318-target study; Scientific Reports; Vol. 14; 7526; 10.1038/s41598-024-54655-z
• Endo, Yoshitaka; Asanuma, Rinka; et el. (2024) Systematic Face Pareidolia Generation Method Using Cycle‐Consistent Adversarial Networks; IEEJ Transactions on Electrical and Electronic Engineering; Vol. 19; No. 4; 535-541; 10.1002/tee.23997
• Booeshaghi, Ali Sina; Chen, Xi; et el. (2024) A machine-readable specification for genomics assays; Bioinformatics; Vol. 40; No. 4; btae168; PMCID PMC11009023; 10.1093/bioinformatics/btae168
• Ma, Jun; Xie, Ronald; et el. (2024) The multimodality cell segmentation challenge: toward universal solutions; Nature Methods; 10.1038/s41592-024-02233-6
• Markarian, Nicholas; Van Auken, Kimberly M.; et el. (2024) Enrichment on steps, not genes, improves inference of differentially expressed pathways; PLOS Computational Biology; Vol. 20; No. 3; e1011968; PMCID PMC10994554; 10.1371/journal.pcbi.1011968
• Tran, Martin; Askary, Amjad; et el. (2024) Lineage motifs as developmental modules for control of cell type proportions; Developmental Cell; Vol. 59; No. 6; 812-826.e3; PMCID PMC10910499
• Muthukumar, Gayathri; Stevens, Taylor A.; et el. (2024) Triaging of α-helical proteins to the mitochondrial outer membrane by distinct chaperone machinery based on substrate topology; Molecular Cell; Vol. 84; No. 6; 1101-1119.e9; 10.1016/j.molcel.2024.01.028
• Chakrabarty, Yogaditya; Yang, Zheng; et el. (2024) The HRI branch of the integrated stress response selectively triggers mitophagy; Molecular Cell; Vol. 84; No. 6; 1090-1100.e6; PMCID PMC11062084; 10.1016/j.molcel.2024.01.016
• Suzuki, Miyuki; Okumura, Akinori; et el. (2024) Fgf10 mutant newts regenerate normal hindlimbs despite severe developmental defects; Proceedings of the National Academy of Sciences; Vol. 121; No. 11; e2314911121; PMCID PMC10945807; 10.1073/pnas.2314911121
• Weatherbee, Bailey A. T.; Weberling, Antonia; et el. (2024) Distinct pathways drive anterior hypoblast specification in the implanting human embryo; Nature Cell Biology; 10.1038/s41556-024-01367-1
• Baltimore, David; Tatel, David S.; et el. (2024) Preface: Recognizing Implicit Bias in the Scientific & Legal Communities; Daedalus; Vol. 153; No. 1; 6-7; 10.1162/daed_e_02043
• Luebbert, Laura; Hoang, Chi; et el. (2024) Fast and scalable querying of eukaryotic linear motifs with gget elm; Bioinformatics; Vol. 40; No. 3; btae095; PMCID PMC10927331; 10.1093/bioinformatics/btae095
• Zhang, Tony; Rosenberg, Matthew; et el. (2024) Endotaxis: A neuromorphic algorithm for mapping, goal-learning, navigation, and patrolling; eLife; Vol. 12; RP84141; PMCID PMC10911395; 10.7554/elife.84141
• Yang, Jason; Li, Francesca-Zhoufan; et el. (2024) Opportunities and Challenges for Machine Learning-Assisted Enzyme Engineering; ACS Central Science; Vol. 10; No. 2; 226-241; PMCID PMC10906252; 10.1021/acscentsci.3c01275
• Zhang, Irene H.; Borer, Benedict; et el. (2024) Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen-deficient zones with diverse metabolic potential; mBio; e02918-23; 10.1128/mbio.02918-23
• Bedois, Alice M. H.; Parker, Hugo J.; et el. (2024) Sea lamprey enlightens the origin of the coupling of retinoic acid signaling to vertebrate hindbrain segmentation; Nature Communications; Vol. 15; 1538; PMCID PMC10879103; 10.1038/s41467-024-45911-x
• Meyerowitz, Joseph T.; Larsson, Elin M.; et el. (2024) Development of Cell-Free Transcription–Translation Systems in Three Soil Pseudomonads; ACS Synthetic Biology; Vol. 13; No. 2; 530-537; 10.1021/acssynbio.3c00468
• Schulte, Samuel J.; Shin, Boyoung; et el. (2024) Multiplex, Quantitative, High-Resolution Imaging of Protein:Protein Complexes via Hybridization Chain Reaction; ACS Chemical Biology; Vol. 19; No. 2; 280-288; PMCID PMC10877569; 10.1021/acschembio.3c00431
• Schwartz, Hillel T.; Tan, Chieh-Hsiang; et el. (2024) Molecular identification of a peroxidase gene controlling body size in the entomopathogenic nematode Steinernema hermaphroditum; Genetics; Vol. 226; No. 2; iyad209; 10.1093/genetics/iyad209
• Ros, Ivo G.; Omoto, Jaison J.; et el. (2024) Descending control and regulation of spontaneous flight turns in Drosophila; Current Biology; Vol. 34; No. 3; 531-540.e5; PMCID PMC10872223; 10.1016/j.cub.2023.12.047
• Piacentino, Michael L.; Fasse, Aria J.; et el. (2024) SMPD3 expression is spatially regulated in the developing embryo by SOXE factors; Developmental Biology; Vol. 506; 31-41; PMCID PMC10872304; 10.1016/j.ydbio.2023.11.011
• Banerjee, Navonil; Rojas Palato, Elisa J.; et el. (2024) Distinct neurogenetic mechanisms establish the same chemosensory valence state at different life stages in Caenorhabditis elegans; G3: Genes, Genomes, Genetics; Vol. 14; No. 2; jkad271; PMCID PMC10849362; 10.1093/g3journal/jkad271
• Kim, Jane H.; Spero, Melanie; et el. (2024) Targeting Anaerobic Respiration in Pseudomonas aeruginosa with Chlorate Improves Healing of Chronic Wounds; Advances in Wound Care; Vol. 13; No. 2; 53-69; 10.1089/wound.2023.0036
• Schulte, Samuel J.; Fornace, Mark E.; et el. (2024) HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples; Development; Vol. 151; No. 4; dev202307; PMCID PMC10941662; 10.1242/dev.202307
• Haloi, Nandan; Huang, Shan; et el. (2024) Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids; Protein Engineering, Design and Selection; Vol. 37; gzae003; PMCID PMC10896302; 10.1093/protein/gzae003
• Liu, Yi; Lei, Miao; et el. (2024) Electronic inputs to cue the emergence of hydrogel structure and to confer function; Materials Letters; Vol. 355; 135497; 10.1016/j.matlet.2023.135497
• Granados, Alejandro A.; Kanrar, Nivedita; et el. (2024) Combinatorial expression motifs in signaling pathways; Cell Genomics; Vol. 4; No. 1; 100463; PMCID PMC10794782; 10.1016/j.xgen.2023.100463
• Zhou, Tingtao; Wan, Xuan; et el. (2024) AI-aided geometric design of anti-infection catheters; Science Advances; Vol. 10; No. 1; eadj1741; PMCID PMC10776022; 10.1126/sciadv.adj1741
• Hoehler, Tori M.; Amend, Jan P.; et el. (2024) Editorial: Studies on life at the energetic edge – from laboratory experiments to field-based investigations, volume II; Frontiers in Microbiology; Vol. 14; 10.3389/fmicb.2023.1351761
• Wackelin, Daniel J.; Mao, Runze; et el. (2024) Enzymatic Assembly of Diverse Lactone Structures: An Intramolecular C–H Functionalization Strategy; Journal of the American Chemical Society; 10.1021/jacs.3c11722
• Larsson, Elin M.; Murray, Richard M.; et el. (2024) Engineering the Soil Bacterium Pseudomonas synxantha 2–79 into a Ratiometric Bioreporter for Phosphorus Limitation; ACS Synthetic Biology; 10.1021/acssynbio.3c00642
• Gorin, Gennady and Pachter, Lior (2024) New and notable: Revisiting the “two cultures” through extrinsic noise; Biophysical Journal; Vol. 123; No. 1; 1-3; 10.1016/j.bpj.2023.11.3400
• Vasquez Ayala, Adriana; Hsu, Chia-Yun; et el. (2024) Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice; Journal of Experimental Medicine; Vol. 221; No. 1; e20230063; PMCID PMC10716256; 10.1084/jem.20230063
• Li, Ching-Yao; Chou, Tsui-Fen; et el. (2024) An innovative nanoformulation utilizing tumor microenvironment-responsive PEG-polyglutamic coating and dynamic charge adjustment for specific targeting of ER stress inducer, microRNA, and immunoadjuvant in pancreatic cancer: In vitro investigations; International Journal of Biological Macromolecules; Vol. 254; No. Pt. 2; 127905; 10.1016/j.ijbiomac.2023.127905
• Booeshaghi, A. Sina; Min, Kyung Hoi (Joseph); et el. (2024) Quantifying orthogonal barcodes for sequence census assays; Bioinformatics Advances; Vol. 4; vbad181; PMCID PMC10783946; 10.1093/bioadv/vbad181
• Zhang, Yameng; Pool, Allan-Hermann; et el. (2023) Parallel neural pathways control sodium consumption and taste valence; Cell; Vol. 186; No. 26; 5751-5765.e16; 10.1016/j.cell.2023.10.020
• Nava, Stephanie; Palma, Wilber; et el. (2023) A cGAL-UAS bipartite expression toolkit for Caenorhabditis elegans sensory neurons; Proceedings of the National Academy of Sciences; Vol. 120; No. 51; e2221680120; PMCID PMC10743456; 10.1073/pnas.2221680120
• Sperling, Alexis L. and Glover, David M. (2023) Protocol for screening facultative parthenogenesis in Drosophila; STAR Protocols; Vol. 4; No. 4; 102585; PMCID PMC10520562; 10.1016/j.xpro.2023.102585
• Zhang, Bao; He, Peng; et el. (2023) A human embryonic limb cell atlas resolved in space and time; Nature; 10.1038/s41586-023-06806-x
• Zernicka-Goetz, Magdalena (2023) The evolution of embryo models; Nature Methods; 10.1038/s41592-023-02077-6
• Sader, John E.; Stassi, Stefano; et el. (2023) Effect of intramodal and intermodal nonlinearities on the flexural resonant frequencies of cantilevered beams; Physical Review B; Vol. 108; No. 22; 224303; 10.1103/physrevb.108.224303
• Bult, Carol J. and Sternberg, Paul W. (2023) The alliance of genome resources: transforming comparative genomics; Mammalian Genome; Vol. 34; No. 4; 531-544; PMCID PMC10628019; 10.1007/s00335-023-10015-2
• Shao, Shuai; Meister, Markus; et el. (2023) Efficient population coding of sensory stimuli; Physical Review Research; Vol. 5; No. 4; 043205; 10.1103/physrevresearch.5.043205
• Yang, Zheng and Chan, David C. (2023) Control of mitochondrial dynamics by a fusogenic lipid; Trends in Cell Biology; Vol. 33; No. 12; 1005-1006; PMCID PMC10841390; 10.1016/j.tcb.2023.10.006
• Tropini, Carolina; Finlay, B. Brett; et el. (2023) Time to rethink academic publishing: the peer reviewer crisis; mBio; Vol. 14; No. 6; e01091-23; PMCID PMC10746150; 10.1128/mbio.01091-23
• Nemet, Ina; Funabashi, Masanori; et el. (2023) Microbe-derived uremic solutes enhance thrombosis potential in the host; mBio; Vol. 14; No. 6; e01331-23; 10.7907/ha07h-ryw11
• Lau, Kasey Y. C.; Amadei, Gianluca; et el. (2023) Assembly of complete mouse embryo models from embryonic and induced stem cell types in vitro; Nature Protocols; Vol. 18; No. 12; 3662-3689; 10.1038/s41596-023-00891-y
• Griggs, Whitney S.; Norman, Sumner L.; et el. (2023) Decoding motor plans using a closed-loop ultrasonic brain–machine interface; Nature Neuroscience; 10.1038/s41593-023-01500-7
• Sperling, A. L. and Glover, D. M. (2023) Aneuploidy during development in facultative parthenogenetic Drosophila; Heredity; 10.1038/s41437-023-00664-z
• Godneeva, Baira; Ninova, Maria; et el. (2023) SUMOylation of Bonus, the Drosophila homolog of Transcription Intermediary Factor 1, safeguards germline identity by recruiting repressive chromatin complexes to silence tissue-specific genes; eLife; Vol. 12; RP89493; PMCID PMC10672805; 10.7554/elife.89493
• Stevens, Taylor Anthony; Pinton Tomaleri, Giovani; et el. (2023) A nanobody-based strategy for rapid and scalable purification of human protein complexes; Nature Protocols; 10.1038/s41596-023-00904-w
• Xiong, Lingyun; Liu, Jing; et el. (2023) Direct androgen receptor control of sexually dimorphic gene expression in the mammalian kidney; Developmental Cell; Vol. 58; No. 21; 2338-2358.e5; PMCID PMC10873092; 10.1016/j.devcel.2023.08.010
• Spolski, Rosanne; Li, Peng; et el. (2023) Distinct use of super-enhancer elements controls cell type–specific CD25 transcription and function; Science Immunology; Vol. 8; No. 89; eadi8217; 10.1126/sciimmunol.adi8217
• Mao, Runze; Taylor, Doris Mia; et el. (2023) Biocatalytic, stereoconvergent alkylation of (Z/E)-trisubstituted silyl enol ethers; Nature Synthesis; 10.1038/s44160-023-00431-2
• Luo, Yicheng; He, Peng; et el. (2023) Maternally inherited siRNAs initiate piRNA cluster formation; Molecular Cell; Vol. 83; No. 21; 3835-3851.e7; PMCID PMC10846595; 10.1016/j.molcel.2023.09.033
• Mah-Som, Annelise Y.; Daw, Jil; et el. (2023) An autosomal-dominant childhood-onset disorder associated with pathogenic variants in VCP; American Journal of Human Genetics; Vol. 110; No. 11; 1959-1975; PMCID PMC10645565
• Salahshoor, Hossein; Yao, Yuxing; et el. (2023) Geometric effects in gas vesicle buckling under ultrasound; Biophysical Journal; Vol. 121; No. 21; 4221-4228; PMCID PMC9674984; 10.1016/j.bpj.2022.09.004
• Godneeva, Baira; Fejes Toth, Katalin; et el. (2023) Impact of Germline Depletion of Bonus on Chromatin State in Drosophila Ovaries; Cells; Vol. 12; No. 22; 2629; PMCID PMC10670193; 10.3390/cells12222629
• Moyers, Belle A.; Partridge, E. Christopher; et el. (2023) Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells; Genome Research; Vol. 33; No. 11; 1879-1892; PMCID PMC10760452; 10.1101/gr.278205.123
• Candry, Pieter; Chadwick, Grayson L.; et el. (2023) Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities; ISME Journal; Vol. 17; No. 11; 2014-2022; PMCID PMC10579388; 10.1038/s41396-023-01508-8
• Gorin, Gennady; Yoshida, Shawn; et el. (2023) Assessing Markovian and Delay Models for Single-Nucleus RNA Sequencing; Bulletin of Mathematical Biology; Vol. 85; No. 11; 114; 10.1007/s11538-023-01213-9
• Sun, Jingjing; Zhang, Chen; et el. (2023) Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm; Cell Reports; Vol. 42; No. 10; 113289; PMCID PMC10704487; 10.1016/j.celrep.2023.113289
• Guna, Alina; Page, Katharine R.; et el. (2023) A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens; BMC Genomics; Vol. 24; 651; PMCID PMC10614335; 10.1186/s12864-023-09754-y
• Jacobs-Li, Jessica; Tang, Weiyi; et el. (2023) Single-cell profiling coupled with lineage analysis reveals vagal and sacral neural crest contributions to the developing enteric nervous system; eLife; Vol. 12; e79156; PMCID PMC10627514; 10.7554/elife.79156
• Kahan, Anat; Mahe, Karan; et el. (2023) Immediate responses to ambient light in vivo reveal distinct subpopulations of suprachiasmatic VIP neurons; iScience; Vol. 26; No. 10; 107865; PMCID PMC10520357; 10.1016/j.isci.2023.107865
• Gorin, Gennady; Vastola, John J.; et el. (2023) Studying stochastic systems biology of the cell with single-cell genomics data; Cell Systems; Vol. 14; No. 10; 822-843.e22; PMCID PMC10725240; 10.1016/j.cels.2023.08.004
• Mohanty, Atish; Nam, Arin; et el. (2023) Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer; Science Advances; Vol. 9; No. 41; eade3816; PMCID PMC10575592; 10.1126/sciadv.ade3816
• Wu-Woods, Natalie J.; Barlow, Jacob T.; et el. (2023) Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples; Nature Methods; 10.1038/s41592-023-02025-4
• Albright, Thomas D.; Baltimore, David; et el. (2023) Science, evidence, law, and justice; Proceedings of the National Academy of Sciences; Vol. 120; No. 41; e2312529120; PMCID PMC10576109; 10.1073/pnas.2312529120
• Hung, Shao-Min; Adams, Sara W.; et el. (2023) Practice makes imperfect: stronger implicit interference with practice in individuals at high risk of developing Alzheimer’s disease; GeroScience; 10.1007/s11357-023-00953-9
• Afik, Eldad; Liu, Toni J. B.; et el. (2023) Macroscopic waves, biological clocks and morphogenesis driven by light in a giant unicellular green alga; Nature Communications; Vol. 14; 6204; PMCID PMC10550971; 10.1038/s41467-023-41813-6
• Blumenfeld, Zack; Bera, Kallol; et el. (2023) Antidepressants enter cells, organelles, and membranes; Neuropsychopharmacology; 10.1038/s41386-023-01725-x
• Chuapoco, Miguel R.; Flytzanis, Nicholas C.; et el. (2023) Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain; Nature Nanotechnology; Vol. 18; No. 10; 1241-1251; PMCID PMC10575780; 10.1038/s41565-023-01419-x
• Lamanna, Francesco; Hervas-Sotomayor, Francisca; et el. (2023) A lamprey neural cell type atlas illuminates the origins of the vertebrate brain; Nature Ecology & Evolution; Vol. 7; No. 10; 1714-1728; PMCID PMC10555824; 10.1038/s41559-023-02170-1
• Schiava, Marianela; Ikenaga, Chiseko; et el. (2023) Clinical Classification of Variants in the Valosin-Containing Protein Gene Associated With Multisystem Proteinopathy; Neurology Genetics; Vol. 9; No. 5; e200093; 10.1212/nxg.0000000000200093
• Venkei, Zsolt G.; Gainetdinov, Ildar; et el. (2023) A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila; Nature Cell Biology; Vol. 25; No. 10; 1495-1505; PMCID PMC10567549; 10.1038/s41556-023-01227-4
• Lim, Jeffrey; Wang, Po T.; et el. (2023) Suppression of cortical electrostimulation artifacts using pre-whitening and null projection; Journal of Neural Engineering; Vol. 20; No. 5; 56018; 10.1088/1741-2552/acf68b
• Ji, Jenny; Viloria Winnett, Alexander; et el. (2023) Index cases first identified by nasal-swab rapid COVID-19 tests had more transmission to household contacts than cases identified by other test types; PLOS ONE; Vol. 18; No. 10; e0292389; PMCID PMC10553276; 10.1371/journal.pone.0292389
• Tu, Jiaobing; Min, Jihong; et el. (2023) A wireless patch for the monitoring of C-reactive protein in sweat; Nature Biomedical Engineering; Vol. 7; No. 10; 1293-1306; PMCID PMC10592261; 10.1038/s41551-023-01059-5
• Sockell, Alexandra; Wong, Wing; et el. (2023) A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids; Cell Systems; Vol. 14; No. 9; 764-776.e6; 10.1016/j.cels.2023.08.002
• Ma, Yitong; Budde, Mark W.; et el. (2023) Tuning Methylation-Dependent Silencing Dynamics by Synthetic Modulation of CpG Density; ACS Synthetic Biology; Vol. 12; No. 9; 2536-2545; PMCID PMC10510725; 10.1021/acssynbio.3c00078
• Pool, Allan-Hermann; Poldsam, Helen; et el. (2023) Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references; Nature Methods; 10.1038/s41592-023-02003-w
• Weng, Jen-Wei; Park, Heenam; et el. (2023) Body stiffness is a mechanical property that facilitates contact-mediated mate recognition in Caenorhabditis elegans; Current Biology; Vol. 33; No. 17; 3585-3596.e5; PMCID PMC10530406; 10.1016/j.cub.2023.07.020
• Sperling, Alexis L.; Fabian, Daniel K.; et el. (2023) A genetic basis for facultative parthenogenesis in Drosophila; Current Biology; Vol. 33; No. 17; 3545-3560.e13; PMCID PMC11044649; 10.1016/j.cub.2023.07.006
• Booeshaghi, A. Sina; Beltrame, Eduardo da Veiga; et el. (2023) Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system; Scientific Reports; Vol. 13; 14834; PMCID PMC10491597; 10.1038/s41598-023-42035-y
• Poceviciute, Roberta; Bogatyrev, Said R.; et el. (2023) Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa; npj Biofilms and Microbiomes; Vol. 9; 64; PMCID PMC10485000; 10.1038/s41522-023-00423-2
• Gao, Shilong; Das, Anuvab; et el. (2023) Enzymatic Nitrogen Incorporation Using Hydroxylamine; Journal of the American Chemical Society; Vol. 145; No. 37; 20196-20201; PMCID PMC10560455; 10.1021/jacs.3c08053
• Henrickson, Amy; Ding, Xiaozhe; et el. (2023) Characterization and quantification of adeno-associated virus capsid-loading states by multi-wavelength analytical ultracentrifugation with UltraScan; Nanomedicine; Vol. 18; No. 22; 1519-1534; PMCID PMC10652292; 10.2217/nnm-2023-0156
• Bao, Min; Cornwall-Scoones, Jake; et el. (2023) Stem cell-derived synthetic embryos self-assemble by exploiting cadherin codes and cortical tension; Nature Cell Biology; Vol. 24; No. 9; 1341-2349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
• Murali, Ranjani; Yu, Hang; et el. (2023) Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea; PLOS Biology; Vol. 21; No. 9; e3002292; PMCID PMC10553843; 10.1371/journal.pbio.3002292
• Jang, Min J.; Coughlin, Gerard M.; et el. (2023) Spatial transcriptomics for profiling the tropism of viral vectors in tissues; Nature Biotechnology; Vol. 41; No. 9; 1272-1286; PMCID PMC10443732; 10.1038/s41587-022-01648-w
• Horns, Felix; Martinez, Joe A.; et el. (2023) Engineering RNA export for measurement and manipulation of living cells; Cell; Vol. 186; No. 17; 3642-3658.e32; PMCID PMC10528933; 10.1016/j.cell.2023.06.013
• Jovanovic, Predrag; Pool, Allan-Hermann; et el. (2023) A sex-specific thermogenic neurocircuit induced by predator smell recruiting cholecystokinin neurons in the dorsomedial hypothalamus; Nature Communications; Vol. 14; 4937; PMCID PMC10427624; 10.1038/s41467-023-40484-7
• Jackson, Kayla C. and Pachter, Lior (2023) A standard for sharing spatial transcriptomics data; Cell Genomics; Vol. 3; No. 8; 100374; PMCID PMC10435375; 10.1016/j.xgen.2023.100374
• Hesse, Janis K. and Tsao, Doris Y. (2023) Functional modules for visual scene segmentation in macaque visual cortex; Proceedings of the National Academy of Sciences; Vol. 120; No. 32; e2221122120; PMCID PMC10410728; 10.1073/pnas.2221122120
• De Jonghe, Joachim; Kaminski, Tomasz S.; et el. (2023) spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content; Nature Communications; Vol. 14; 4788; PMCID PMC10409775; 10.1038/s41467-023-40322-w
• Barlow, Ida L.; Mackay, Eirinn; et el. (2023) The zebrafish mutant dreammist implicates sodium homeostasis in sleep regulation; eLife; Vol. 12; RP87521; PMCID PMC10406431; 10.7554/elife.87521
• Luzzi, Anna; Wang, Feng; et el. (2023) Skeletal muscle cell protein dysregulation highlights the pathogenesis mechanism of myopathy-associated p97/VCP R155H mutations; Frontiers in Neurology; Vol. 14; 1211635; PMCID PMC10435852
• Pleiner, Tino; Hazu, Masami; et el. (2023) A selectivity filter in the ER membrane protein complex limits protein misinsertion at the ER; Journal of Cell Biology; Vol. 222; No. 8; Art. No. e202212007; PMCID PMC10200711; 10.1083/jcb.202212007
• Chari, Tara and Pachter, Lior (2023) The specious art of single-cell genomics; PLOS Computational Biology; Vol. 19; No. 8; e1011288; PMCID PMC10434946; 10.1371/journal.pcbi.1011288
• Hueschen, Christina L.; Dunn, Alexander R.; et el. (2023) Wildebeest herds on rolling hills: Flocking on arbitrary curved surfaces; Physical Review E; Vol. 108; No. 2; 024610; 10.1103/physreve.108.024610
• Thalhammer, Korbinian O. and Newman, Dianne K. (2023) A phenazine-inspired framework for identifying biological functions of microbial redox-active metabolites; Current Opinion in Chemical Biology; Vol. 75; Art. No. 102320; 10.1016/j.cbpa.2023.102320
• Herbst, Ellen D.; Pennington, David L.; et el. (2023) N-acetylcysteine for smoking cessation among dual users of tobacco and cannabis: Protocol and rationale for a randomized controlled trial; Contemporary Clinical Trials; Vol. 131; 107250; 10.1016/j.cct.2023.107250
• Santos, Inês B.; Wainman, Alan; et el. (2023) Mob4 is essential for spermatogenesis in Drosophila melanogaster; GENETICS; Vol. 224; No. 4; iyad104; PMCID PMC10411562; 10.1093/genetics/iyad104
• Haccard, Olivier; Ciardo, Diletta; et el. (2023) Rif1 restrains the rate of replication origin firing in Xenopus laevis; Communications Biology; Vol. 6; 788; PMCID PMC10387115; 10.1038/s42003-023-05172-8
• Mao, Runze; Wackelin, Daniel J.; et el. (2023) Enantio- and Diastereoenriched Enzymatic Synthesis of 1,2,3-Polysubstituted Cyclopropanes from (Z/E)-Trisubstituted Enol Acetates; Journal of the American Chemical Society; Vol. 145; No. 29; 16176-16185; PMCID PMC10528827; 10.1021/jacs.3c04870
• Stundl, Jan; Martik, Megan L.; et el. (2023) Ancient vertebrate dermal armor evolved from trunk neural crest; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 30; e2221120120; PMCID PMC10372632; 10.1073/pnas.2221120120
• Shepherd, Doulin C.; Kaplan, Mohammed; et el. (2023) Morphological remodeling of Coxiella burnetii during its biphasic developmental cycle revealed by cryo-electron tomography; iScience; Vol. 26; No. 7; 107210; PMCID PMC10362272; 10.1016/j.isci.2023.107210
• Tusche, Anita; Spunt, Robert P.; et el. (2023) Neural signatures of social inferences predict the number of real-life social contacts and autism severity; Nature Communications; Vol. 14; 4399; PMCID PMC10359299; 10.1038/s41467-023-40078-3
• Greenbaum, Shirley; Averbukh, Inna; et el. (2023) A spatially resolved timeline of the human maternal–fetal interface; Nature; Vol. 619; No. 7970; 595-605; PMCID PMC10356615; 10.1038/s41586-023-06298-9
• Rouhani, Nina; Stanley, Damian; et el. (2023) Collective events and individual affect shape autobiographical memory; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 29; Art. No. e2221919120; PMCID PMC10629560; 10.1073/pnas.2221919120
• Zhu, Ronghui; Santat, Leah A.; et el. (2023) Reconstitution of morphogen shuttling circuits; Science Advances; Vol. 9; No. 28; eadf9336; PMCID PMC10337948; 10.1126/sciadv.adf9336
• LaPorte, Matthew G.; Alverez, Celeste; et el. (2023) Optimization of 1,2,4-Triazole-Based p97 Inhibitors for the Treatment of Cancer; ACS Medicinal Chemistry Letters; Vol. 14; No. 7; 977-985; PMCID PMC10351062; 10.1021/acsmedchemlett.3c00163
• Ninova, Maria; Holmes, Hannah; et el. (2023) Pervasive SUMOylation of heterochromatin and piRNA pathway proteins; Cell Genomics; Vol. 3; No. 7; 100329; PMCID PMC10363806; 10.1016/j.xgen.2023.100329
• Morton, James T.; Jin, Dong-Min; et el. (2023) Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles; Nature Neuroscience; Vol. 26; No. 7; 1208-1217; PMCID PMC10322709; 10.1038/s41593-023-01361-0
• Jiménez Otero, Fernanda; Newman, Dianne K.; et el. (2023) Pyocyanin-dependent electrochemical inhibition of Pseudomonas aeruginosa biofilms is synergistic with antibiotic treatment; mBio; Vol. 14; No. 4; e0070223; PMCID PMC10470778; 10.1128/mbio.00702-23
• Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types; Microbiology Spectrum; Vol. 11; No. 4; e01295-23; PMCID PMC10434058; 10.1128/spectrum.01295-23
• Kandimalla, Pratyush; Omoto, Jaison Jiro; et el. (2023) Lineages to circuits: the developmental and evolutionary architecture of information channels into the central complex; Journal of Comparative Physiology A; Vol. 209; No. 4; 679-720; PMCID PMC10354165; 10.1007/s00359-023-01616-y
• Maška, Martin; Ulman, Vladimír; et el. (2023) The Cell Tracking Challenge: 10 years of objective benchmarking; Nature Methods; PMCID PMC10333123; 10.1038/s41592-023-01879-y
• Varshavsky, Alexander; Lewis, Kim; et el. (2023) Deletions of DNA in cancer and their possible uses for therapy; Bioessays; Vol. 45; No. 7; e2300051; PMCID PMC11102808; 10.1002/bies.202300051
• Rouressol, Lisa; Briseno, John; et el. (2023) Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid; iScience; Vol. 26; No. 7; 107091; PMCID PMC10329180; 10.1016/j.isci.2023.107091
• Weatherbee, Bailey A. T.; Gantner, Carlos W.; et el. (2023) A model of the post-implantation human embryo derived from pluripotent stem cells; Nature; 10.1038/s41586-023-06368-y
• Otjacques, Eve; Pissarra, Vasco; et el. (2023) Bioluminescence in cephalopods: biodiversity, biogeography and research trends; Frontiers in Marine Science; Vol. 10; Art. No. 1161049; 10.3389/fmars.2023.1161049
• Truong, Lisa; Chen, Yen-Wei; et el. (2023) Single-nucleus resolution mapping of the adult C. elegans and its application to elucidate inter- and trans-generational response to alcohol; Cell Reports; Vol. 42; No. 6; 112535; PMCID PMC10592506; 10.1016/j.celrep.2023.112535
• Li, Yutian; Sarma, Anish A.; et el. (2023) Response to comment on ‘A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice’; eLife; Vol. 12; e85370; PMCID PMC10287153; 10.7554/elife.85370
• Lee, Peter H.; Anaya, Michael; et el. (2023) An extracellular vesicle targeting ligand that binds to Arc proteins and facilitates Arc transport in vivo; eLife; Vol. 12; Art. No. e82874; PMCID PMC10289811; 10.7554/elife.82874
• Tzung, Keh-Weei; Lalonde, Robert L.; et el. (2023) A median fin derived from the lateral plate mesoderm and the origin of paired fins; Nature; Vol. 618; No. 7965; 543-549; PMCID PMC10266977; 10.1038/s41586-023-06100-w
• Huang, Huiqian; Joffrin, Amélie M.; et el. (2023) Chondroitin 4-O-sulfation regulates hippocampal perineuronal nets and social memory; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 24; Art. No. e2301312120; PMCID PMC10268298; 10.1073/pnas.2301312120
• Findlay, Andrew R.; Paing, May M.; et el. (2023) DNAJB6 isoform specific knockdown: Therapeutic potential for limb girdle muscular dystrophy D1; Molecular Therapy - Nucleic Acids; Vol. 32; 937-948; PMCID PMC10280091; 10.1016/j.omtn.2023.05.017
• Chen, Xinhong; Wolfe, Damien A.; et el. (2023) Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates; Nature Communications; Vol. 14; Art. No. 3345; PMCID PMC10250345; 10.1038/s41467-023-38582-7
• Jones, Jeff; MacKrell, Elliot J.; et el. (2023) Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization; BMC Bioinformatics; Vol. 24; Art. No. 239; PMCID PMC10246047; 10.1186/s12859-023-05360-7
• Varshavsky, Alexander; Finley, Daniel; et el. (2023) Dieter Wolf (1941–2023): a life dedicated to understanding protein quality control and the ubiquitin‐proteasome system; EMBO Journal; Vol. 42; No. 11; Art. No. e114222; 10.15252/embj.2023114222
• Liu, Liyuan; Wang, Harris H.; et el. (2023) Highly efficient and rapid generation of genetic variants; Nature Methods; Vol. 20; No. 6; 795-796; PMCID PMC10158673; 10.1038/s41592-023-01869-0
• Klumpe, Heidi E.; Garcia-Ojalvo, Jordi; et el. (2023) The computational capabilities of many-to-many protein interaction networks; Cell Systems; Vol. 14; No. 6; 430-446; PMCID PMC10318606; 10.1016/j.cels.2023.05.001
• Cai, Karena X.; Phan-Minh, Tung; et el. (2023) Rules of the Road: Formal Guarantees for Autonomous Vehicles With Behavioral Contract Design; IEEE Transactions on Robotics; Vol. 39; No. 3; 1853-1872; 10.1109/tro.2023.3247951
• Guan, Charles; Aflalo, Tyson; et el. (2023) Decoding and geometry of ten finger movements in human posterior parietal cortex and motor cortex; Journal of Neural Engineering; Vol. 20; No. 3; Art. No. 036020; 10.1088/1741-2552/acd3b1
• Hung, Shao-Min; Wu, Daw-An; et el. (2023) Extracting probability in the absence of visual awareness; Cognitive, Affective, and Behavioral Neuroscience; Vol. 23; No. 3; 620-630; PMCID PMC10390606; 10.3758/s13415-022-01057-1
• Rossiter, John Anthony; Cassandras, Christos G.; et el. (2023) Control education for societal-scale challenges: A community roadmap; Annual Reviews in Control; Vol. 55; 1-17; 10.1016/j.arcontrol.2023.03.007
• Hoffmann, Magnus A. G.; Yang, Zhi; et el. (2023) ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines; Cell; Vol. 186; No. 11; 2380-2391; PMCID PMC10121106; 10.1016/j.cell.2023.04.024
• Katti, Raj; Arora, Harpreet Singh; et el. (2023) Hot Carrier Thermalization and Josephson Inductance Thermometry in a Graphene-Based Microwave Circuit; Nano Letters; Vol. 23; No. 10; 4136-4141; 10.1021/acs.nanolett.2c04791
• Bronner, Marianne (2023) In the Spotlight—Established researcher [Marianne Bronner]; Journal of Experimental Zoology Part B; 10.1002/jez.b.23190
• Inglis, Alison J.; Guna, Alina; et el. (2023) Coupled protein quality control during nonsense-mediated mRNA decay; Journal of Cell Science; Vol. 136; No. 10; Art. No. jcs261216; PMCID PMC10234110; 10.1242/jcs.261216
• Huang, Shan; Wang, Kaihang; et el. (2023) Genome manipulation by guide-directed Argonaute cleavage; Nucleic Acids Research; Vol. 51; No. 8; 4078-4085; PMCID PMC10164581; 10.1093/nar/gkad188
• Esyunina, Daria; Okhtienko, Anastasiia; et el. (2023) Specific targeting of plasmids with Argonaute enables genome editing; Nucleic Acids Research; Vol. 51; No. 8; 4086-4099; PMCID PMC10164558; 10.1093/nar/gkad191
• Chen, Peiwei and Aravin, Alexei A. (2023) Genetic control of a sex-specific piRNA program; Current Biology; Vol. 33; No. 9; 1825-1835.e3; PMCID PMC10431932; 10.1016/j.cub.2023.03.057
• Dutka, Przemysław; Metskas, Lauren Ann; et el. (2023) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET; Structure; Vol. 31; No. 5; 518-528; PMCID PMC10185304; 10.1016/j.str.2023.03.011
• Banerjee, Navonil; Shih, Pei-Yin; et el. (2023) Differential processing of a chemosensory cue across life stages sharing the same valence state in Caenorhabditis elegans; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 19; Art. No. e2218023120; PMCID PMC10175840; 10.1073/pnas.2218023120
• Kaplan, Mohammed; Yao, Qing; et el. (2023) Structure and Assembly of the Proteus mirabilis Flagellar Motor by Cryo-Electron Tomography; International Journal of Molecular Sciences; Vol. 24; No. 9; Art. No. 8292; PMCID PMC10179241; 10.3390/ijms24098292
• Walker, Noah B.; Yan, Yijin; et el. (2023) β2 nAChR Activation on VTA DA Neurons Is Sufficient for Nicotine Reinforcement in Rats; eNeuro; Vol. 10; No. 5; Art. No. ENEURO.0449-22.2023; PMCID PMC10216253; 10.1523/eneuro.0449-22.2023
• Olina, Anna; Agapov, Aleksei; et el. (2023) Bacterial Argonaute Proteins Aid Cell Division in the Presence of Topoisomerase Inhibitors in Escherichia coli; Microbiology Spectrum; Vol. 11; No. 3; Art. No. 04146-22; PMCID PMC10269773; 10.1128/spectrum.04146-22
• Ciemniecki, John A. and Newman, Dianne K. (2023) NADH dehydrogenases are the predominant phenazine reductases in the electron transport chain of Pseudomonas aeruginosa; Molecular Microbiology; Vol. 119; No. 5; 560-573; PMCID PMC11129870; 10.1111/mmi.15049
• Marable, Sierra S. and Bronner, Marianne E. (2023) Reprogramming of trunk neural crest to a cranial crest-like identity alters their transcriptome and developmental potential; Differentiation; Vol. 131; 27-37; PMCID PMC10330191; 10.1016/j.diff.2023.04.001
• Lemma, Linnea M.; Varghese, Minu; et el. (2023) Spatio-temporal patterning of extensile active stresses in microtubule-based active fluids; PNAS Nexus; Vol. 2; No. 5; Art. No. pgad130; PMCID PMC10165807; 10.1093/pnasnexus/pgad130
• MacNabb, Brendan W. and Rothenberg, Ellen V. (2023) Speed and navigation control of thymocyte development by the fetal T-cell gene regulatory network; Immunological Reviews; Vol. 315; No. 1; 171-196; PMCID PMC10771342; 10.1111/imr.13190
• Kong, Qing; Xia, Shiyu; et el. (2023) Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis; Science Immunology; Vol. 8; No. 82; Art. No. eadg3196; PMCID PMC10338320; 10.1126/sciimmunol.adg3196
• Sarraf, Namita; Rodriguez, Kellen R.; et el. (2023) Modular reconfiguration of DNA origami assemblies using tile displacement; Science Robotics; Vol. 8; No. 77; Art. No. adf1511; 10.1126/scirobotics.adf1511
• Jang, Min Jee and Gradinaru, Viviana (2023) Spatial tropism profiling of AAV vectors by ultrasensitive sequential FISH in tissue; Nature Biotechnology; PMCID PMC9885914; 10.1038/s41587-023-01681-3
• Rosenthal, Isabelle A.; Bashford, Luke; et el. (2023) S1 represents multisensory contexts and somatotopic locations within and outside the bounds of the cortical homunculus; Cell Reports; Vol. 42; No. 4; 112312; PMCID PMC10544688; 10.1016/j.celrep.2023.112312
• Marken, John P. and Murray, Richard M. (2023) Addressable and adaptable intercellular communication via DNA messaging; Nature Communications; Vol. 14; Art. No. 2358; PMCID PMC10126159; 10.1038/s41467-023-37788-z
• Shay, Timothy F.; Sullivan, Erin E.; et el. (2023) Primate-conserved carbonic anhydrase IV and murine-restricted LY6C1 enable blood-brain barrier crossing by engineered viral vectors; Science Advances; Vol. 9; No. 16; Art. No. eadg6618; PMCID PMC10115422; 10.1126/sciadv.adg6618
• Li, Ya-tang and Meister, Markus (2023) Functional cell types in the mouse superior colliculus; eLife; Vol. 12; Art. No. e82367; PMCID PMC10121220; 10.7554/elife.82367
• Campos, Lillian J.; Arokiaraj, Cynthia M.; et el. (2023) Advances in AAV technology for delivering genetically encoded cargo to the nonhuman primate nervous system; Current Research in Neurobiology; Vol. 4; Art. No. 100086; PMCID PMC10313870; 10.1016/j.crneur.2023.100086
• Shrock, Ellen L.; Timms, Richard T.; et el. (2023) Germline-encoded amino acid–binding motifs drive immunodominant public antibody responses; Science; Vol. 380; No. 6640; Art. No. eadc9498; PMCID PMC10273302; 10.1126/science.adc9498
• Kreida, Stefan; Narita, Akihiro; et el. (2023) Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly; Structure; Vol. 31; No. 4; 385-394; PMCID PMC10168017; 10.1016/j.str.2023.02.005
• Danelius, Emma; Porter, Nicholas J.; et el. (2023) MicroED Structure of a Protoglobin Reactive Carbene Intermediate; Journal of the American Chemical Society; Vol. 145; No. 13; 7159-7165; PMCID PMC10080679; 10.1021/jacs.2c12004
• Schubert, Rajib; Bae, Taegeun; et el. (2023) CRISPR-clear imaging of melanin-rich B16-derived solid tumors; Communications Biology; Vol. 6; Art. No. 370; PMCID PMC10073193; 10.1038/s42003-023-04614-7
• McRose, Darcy L.; Liang, Jinyang; et el. (2023) The chemical ecology of coumarins and phenazines affects iron acquisition by pseudomonads; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 14; Art. No. e2217951120; PMCID PMC10083548; 10.1073/pnas.2217951120
• Reilly, Douglas K.; Schwarz, Erich M.; et el. (2023) Transcriptomic profiling of sex-specific olfactory neurons reveals subset-specific receptor expression in Caenorhabditis elegans; Genetics; Vol. 223; No. 4; iyad026; PMCID PMC10319972; 10.1093/genetics/iyad026
• Kang, Wei; Burns, John; et el. (2023) Advances in theoretical and computational nonlinear control — Dedicated to the 80th birthday of Professor Arthur J. Krener; Systems and Control Letters; Vol. 174; Art. No. 105492; 10.1016/j.sysconle.2023.105492
• Upchurch, Sean; Palumbo, Emilio; et el. (2023) RNAget: an API to securely retrieve RNA quantifications; Bioinformatics; Vol. 39; No. 4; Art. No. btad126; PMCID PMC10081869; 10.1093/bioinformatics/btad126
• Kagan, Jonathan C.; Rothenberg, Ellen V.; et el. (2023) Cold Spring Harbor Laboratory 2022: emerging insights and viewpoints in immunology; Trends in Immunology; Vol. 44; No. 4; 248-255; 10.1016/j.it.2023.02.003
• Mangenot, Xavier; Xie, Hao; et el. (2023) ²H-²H clumping in molecular hydrogen method and preliminary results; Chemical Geology; Vol. 621; Art. No. 121278; 10.1016/j.chemgeo.2022.121278
• Koontz, Alison; Urrutia, Hugo A.; et el. (2023) Making a head: Neural crest and ectodermal placodes in cranial sensory development; Seminars in Cell and Developmental Biology; Vol. 138; 15-27; PMCID PMC10224775; 10.1016/j.semcdb.2022.06.009
• Nichols, Aaron L.; Blumenfeld, Zack; et el. (2023) Selective Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in Cytoplasm, Endoplasmic Reticulum, and Membrane; Journal of Neuroscience; Vol. 43; No. 13; 2222-2241; PMCID PMC10072302; 10.1523/jneurosci.1519-22.2022
• Sperling, A. L. and Glover, D. M. (2023) Parthenogenesis in dipterans: a genetic perspective; Proceedings of the Royal Society of London. Series B, Biological Sciences; Vol. 290; No. 1995; Art. No. 20230261; PMCID PMC10031431; 10.1098/rspb.2023.0261
• Fenelon, Kelli D.; Gao, Fan; et el. (2023) Cell-specific occupancy dynamics between the pioneer-like factor Opa/ZIC and Ocelliless/OTX regulate early head development in embryos; Frontiers in Cell and Developmental Biology; Vol. 11; Art. No. 1126507; PMCID PMC10083704; 10.3389/fcell.2023.1126507
• Baltimore, David (2023) Paul Berg (1926–2023) Father of genetic engineering; Science; Vol. 379; No. 6637; 1095; 10.1126/science.adh2943
• Braet, Sean M.; Buckley, Theresa S. C.; et el. (2023) Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics; eLife; Vol. 12; Art. No. e82584; PMCID PMC10049203; 10.7554/elife.82584
• Le Guerroué, François; Bunker, Eric N.; et el. (2023) TNIP1 inhibits selective autophagy via bipartite interaction with LC3/GABARAP and TAX1BP1; Molecular Cell; Vol. 83; No. 6; 927-941.e8; PMCID PMC10112281; 10.1016/j.molcel.2023.02.023
• Cabeen, Ryan P.; Toga, Arthur W.; et el. (2023) Mapping frontoinsular cortex from diffusion microstructure; Cerebral Cortex; Vol. 33; No. 6; 2715-2733; PMCID PMC10016069; 10.1093/cercor/bhac237
• Rosencrans, William M. and Chan, David C. (2023) Fusion activators enhance mitochondrial function; Mitochondrial Communications; Vol. 1; 33-34; PMCID PMC10956541; 10.1016/j.mitoco.2023.03.001
• Schulte, Samuel J.; Huang, Jining; et el. (2023) Hybridization Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing; ACS Infectious Diseases; Vol. 9; No. 3; 450-458; PMCID PMC9924079; 10.1021/acsinfecdis.2c00472
• Mattick, John S.; Amaral, Paulo P.; et el. (2023) Long non-coding RNAs: definitions, functions, challenges and recommendations; Nature Reviews Molecular Cell Biology; Vol. 24; No. 6; 430-447; PMCID PMC10213152; 10.1038/s41580-022-00566-8
• Arakaki, Xianghong; Arechavala, Rebecca J.; et el. (2023) The connection between heart rate variability (HRV), neurological health, and cognition: A literature review; Frontiers in Neuroscience; Vol. 17; Art. No. 1055445; PMCID PMC10014754; 10.3389/fnins.2023.1055445
• Scott, Ryan T.; Sanders, Lauren M.; et el. (2023) Biomonitoring and precision health in deep space supported by artificial intelligence; Nature Machine Intelligence; Vol. 5; No. 3; 196-207; 10.1038/s42256-023-00617-5
• Cable, Jennifer; Balachandran, Siddharth; et el. (2023) Viral immunity: Basic mechanisms and therapeutic applications—a Keystone Symposia report; Annals of the New York Academy of Sciences; Vol. 1521; No. 1; 32-45; 10.1111/nyas.14960
• Liang, William; Guo, Hongsun; et el. (2023) Auditory Mondrian masks the airborne-auditory artifact of focused ultrasound stimulation in humans; Brain Stimulation; Vol. 16; No. 2; 604-606; PMCID PMC10314733; 10.1016/j.brs.2023.03.002
• Guna, Alina; Hazu, Masami; et el. (2023) A TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic Reticulum; Cold Spring Harbor Perspectives in Biology; Vol. 15; No. 3; Art. No. a041252; PMCID PMC9979854; 10.1101/cshperspect.a041252
• Boktor, Joseph C.; Sharon, Gil; et el. (2023) Integrated Multi‐Cohort Analysis of the Parkinson’s Disease Gut Metagenome; Movement Disorders; Vol. 38; No. 3; 399-409; 10.1002/mds.29300
• Mehrotra, Pihu; Ikhapoh, Izuagie; et el. (2023) Wnt/BMP Mediated Metabolic Reprogramming Preserves Multipotency of Neural Crest-Like Stem Cells; Stem Cells; Vol. 41; No. 3; 287-305; PMCID PMC10020983; 10.1093/stmcls/sxad001
• Holman, Elizabeth A.; Krishnan, Harinarayan; et el. (2023) Toward implementing autonomous adaptive data acquisition for scanning hyperspectral imaging of biological systems; Applied Physics Reviews; Vol. 10; No. 1; Art. No. 011319; 10.1063/5.0123278
• Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods; PNAS Nexus; Vol. 2; No. 3; pgad033; PMCID PMC10013338; 10.1093/pnasnexus/pgad033
• Ma, Dingbang; Herndon, Nicholas; et el. (2023) Neural connectivity molecules best identify the heterogeneous clock and dopaminergic cell types in the Drosophila adult brain; Science Advances; Vol. 9; No. 8; Art. No. eade8500; PMCID PMC9946362; 10.1126/sciadv.ade8500
• Gristick, Harry B.; Hartweger, Harald; et el. (2023) CD4 binding site immunogens elicit heterologous anti–HIV-1 neutralizing antibodies in transgenic and wild-type animals; Science Immunology; Vol. 8; No. 80; eade6364; PMCID PMC10202037; 10.1126/sciimmunol.ade6364
• Pandey, Ayush; Rodriguez, Makena L.; et el. (2023) Characterization of Integrase and Excisionase Activity in a Cell-Free Protein Expression System Using a Modeling and Analysis Pipeline; ACS Synthetic Biology; Vol. 12; No. 2; 511-523; 10.1021/acssynbio.2c00534
• Zhang, Juner; Maggiolo, Ailiena O.; et el. (2023) Chemodivergent C(sp³)–H and C(sp²)–H cyanomethylation using engineered carbene transferases; Nature Catalysis; Vol. 6; No. 2; 152-160; PMCID PMC9983643; 10.1038/s41929-022-00908-x
• Banks, Rachel A.; Galstyan, Vahe; et el. (2023) Motor processivity and speed determine structure and dynamics of microtubule-motor assemblies; eLife; Vol. 12; Art. No. e79402; PMCID PMC10014072; 10.7554/elife.79402
• Rusch, Tessa; Han, Yanting; et el. (2023) COVID-Dynamic: a large-scale longitudinal study of socioemotional and behavioral change across the pandemic; Scientific Data; Vol. 10; Art. No. 71; PMCID PMC9897616; 10.1038/s41597-022-01901-6
• Thomson, Matt (2023) Spin glasses, error correcting codes, and synchronization of human stem cell organoids; Cell; Vol. 186; No. 3; 461-463; 10.1016/j.cell.2023.01.006
• Pollak, Daniel J.; Chawla, Gautam; et el. (2023) First steps into the cloud: Using Amazon data storage and computing with Python notebooks; PLoS ONE; Vol. 18; No. 2; Art. No. e0278316; PMCID PMC9910747; 10.1371/journal.pone.0278316
• Laso-Pérez, Rafael; Wu, Fabai; et el. (2023) Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome; Nature Microbiology; Vol. 8; No. 2; 231-245; PMCID PMC9894754; 10.1038/s41564-022-01297-4
• Apostolou, Effie; Blau, Helen; et el. (2023) Progress and challenges in stem cell biology; Nature Cell Biology; Vol. 25; No. 2; 203-206; 10.1038/s41556-023-01087-y
• Shin, Boyoung and Rothenberg, Ellen V. (2023) Multi-modular structure of the gene regulatory network for specification and commitment of murine T cells; Frontiers in Immunology; Vol. 14; Art. No. 1108368; PMCID PMC9928580; 10.3389/fimmu.2023.1108368
• Carter, Alyssa M.; Winnett, Alexander Viloria; et el. (2023) Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips; Open Forum Infectious Diseases; Vol. 10; No. 1; Art. No. ofac701; PMCID PMC9887260; 10.1093/ofid/ofac701
• Lin, Chujun and Adolphs, Ralph (2023) Trait impressions from faces depend on the goals of the perceiver; British Journal of Psychology; 10.1111/bjop.12618
• Schaus, Lucas; Das, Anuvab; et el. (2023) Protoglobin-Catalyzed Formation of cis-Trifluoromethyl-Substituted Cyclopropanes by Carbene Transfer; Angewandte Chemie International Edition; Vol. 62; No. 4; Art. No. e202208936; PMCID PMC9894577; 10.1002/anie.202208936
• Huang, Kuan-Ying A.; Chen, Xiaorui; et el. (2023) Structural basis for a conserved neutralization epitope on the receptor-binding domain of SARS-CoV-2; Nature Communications; Vol. 14; Art. No. 311; PMCID PMC9852238; 10.1038/s41467-023-35949-8
• Sohn, Won Joon; Lim, Jeffrey; et el. (2023) Benchtop and bedside validation of a low-cost programmable cortical stimulator in a testbed for bi-directional brain-computer-interface research; Frontiers in Neuroscience; Vol. 16; Art. No. 1075971; PMCID PMC9878125; 10.3389/fnins.2022.1075971
• Earley, Zachary M.; Lisicka, Wioletta; et el. (2023) GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology; Immunity; Vol. 56; No. 1; 43-57.e10; 10.1016/j.immuni.2022.12.009
• Ousey, James; Boktor, Joseph C.; et el. (2023) Gut microbiota suppress feeding induced by palatable foods; Current Biology; Vol. 33; No. 1; 147-157.e7; PMCID PMC9839363; 10.1016/j.cub.2022.10.066
• Meyerowitz, Elliot M. (2023) Elliot M. Meyerowitz; Current Biology; Vol. 33; No. 1; R4-R6; 10.1016/j.cub.2022.11.040
• Nair, Aditya; Karigo, Tomomi; et el. (2023) An approximate line attractor in the hypothalamus encodes an aggressive state; Cell; Vol. 186; No. 1; 178-193; PMCID PMC9990527; 10.1016/j.cell.2022.11.027
• Utter, D. R. and Orphan, V. J. (2023) Gifts hidden in shadowy genome islands; Cell; Vol. 186; No. 1; 5-7; 10.1016/j.cell.2022.12.001
• Luebbert, Laura and Pachter, Lior (2023) Efficient querying of genomic reference databases with gget; Bioinformatics; Vol. 39; No. 1; Art. No. btac836; PMCID PMC9835474; 10.1093/bioinformatics/btac836
• Murata, Daisuke; Grunseich, Christopher; et el. (2023) A Heterozygous Mutation in MFF Associated with a Mild Mitochondrial Phenotype; Journal of Neuromuscular Diseases; Vol. 10; No. 1; 107-118; 10.3233/jnd-221532
• Amadei, Gianluca and Glover, David M. (2023) Behind the developing brains and beating hearts of stem cell-derived embryo models; Open Biology; Vol. 13; No. 1; Art. No. rsob.220325; PMCID PMC9833437; 10.1098/rsob.220325
• Gálvez-Merchán, Ángel; Min, Kyung Hoi (Joseph); et el. (2023) Metadata retrieval from sequence databases with ffq; Bioinformatics; Vol. 39; No. 1; Art. No. btac667; PMCID PMC9883619; 10.1093/bioinformatics/btac667
• Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Antibody Recognition of CD4-Induced Open HIV-1 Env Trimers; Journal of Virology; Vol. 96; No. 24; e0108222; PMCID PMC9769388; 10.1128/jvi.01082-22
• Cabrera, Alan; Edelstein, Hailey I.; et el. (2022) The sound of silence: Transgene silencing in mammalian cell engineering; Cell Systems; Vol. 13; No. 12; 950-973; PMCID PMC9880859; 10.1016/j.cels.2022.11.005
• Winnett, Alexander Viloria; Porter, Michael K.; et el. (2022) Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking; Microbiology Spectrum; Vol. 10; No. 6; e03873-22; PMCID PMC9769854; 10.1128/spectrum.03873-22
• Flamholz, Avi I.; Saccomano, Samuel; et el. (2022) Optical O₂ Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria; mBio; Vol. 13; No. 6; Art. No. e0207622; PMCID PMC9765510; 10.1128/mbio.02076-22
• Wilbert, Steven A. and Newman, Dianne K. (2022) The contrasting roles of nitric oxide drive microbial community organization as a function of oxygen presence; Current Biology; Vol. 32; No. 24; 5221-5234.e4; PMCID PMC9772256; 10.1016/j.cub.2022.10.008
• Lin, Lizhu; Pinto, Antonella; et el. (2022) ETS1 loss in mice impairs cardiac outflow tract septation via a cell migration defect autonomous to the neural crest; Human Molecular Genetics; Vol. 31; No. 24; 4217-4227; PMCID PMC10148727; 10.1093/hmg/ddac174
• Whitehead, Samuel C.; Leone, Sofia; et el. (2022) Neuromuscular embodiment of feedback control elements in Drosophila flight; Science Advances; Vol. 8; No. 50; Art. No. eabo7461; PMCID PMC9750141; 10.1126/sciadv.abo7461
• Hay, Bruce A. and Guo, Ming (2022) Gene drive-mediated population elimination for biodiversity conservation. When you come to a fork in the road, take it; Proceedings of the National Academy of Sciences of the United States of America; Vol. 119; No. 51; Art. No. e2218020119; PMCID PMC9907123; 10.1073/pnas.2218020119
• Fan, Chengcheng; Cohen, Alexander A.; et el. (2022) Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes; Immunity; Vol. 55; No. 12; 2419-2435.e10; PMCID PMC9606073; 10.1016/j.immuni.2022.10.019
• Piacentino, Michael L.; Hutchins, Erica J.; et el. (2022) Temporal changes in plasma membrane lipid content induce endocytosis to regulate developmental epithelial-to-mesenchymal transition; Proceedings of the National Academy of Sciences of the United States of America; Vol. 119; No. 51; Art. No. e2212879119; PMCID PMC9907157; 10.1073/pnas.2212879119
• Gorin, Gennady; Vastola, John J.; et el. (2022) Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments; Nature Communications; Vol. 13; Art. No. 7620; PMCID PMC9734650; 10.1038/s41467-022-34857-7
• Nicolas, William J.; Jensen, Grant J.; et el. (2022) Focused Ion Beam Milling and Cryo-electron Tomography Methods to Study the Structure of the Primary Cell Wall in Allium cepa; Bio-protocol; Vol. 12; No. 23; Art. No. e4559; PMCID PMC9729855; 10.21769/bioprotoc.4559
• Saltoun, Karin; Adolphs, Ralph; et el. (2022) Dissociable brain structural asymmetry patterns reveal unique phenome-wide profiles; Nature Human Behaviour; 10.1038/s41562-022-01461-0
• Parker, Joseph (2022) The bank most tangled [book review]; Current Biology; Vol. 32; No. 24; R1328-R1330; 10.1016/j.cub.2022.10.023
• Alfonzo, Edwin; Das, Anuvab; et el. (2022) New additions to the arsenal of biocatalysts for noncanonical amino acid synthesis; Current Opinion in Green and Sustainable Chemistry; Vol. 38; Art. No. 100701; PMCID PMC9770695; 10.1016/j.cogsc.2022.100701
• Wang, Sheng; Garcia-Ojalvo, Jordi; et el. (2022) Periodic spatial patterning with a single morphogen; Cell Systems; Vol. 13; No. 12; 1033-1047.e7; 10.1016/j.cels.2022.11.001
• Petrovic, Stefan; Mobbs, George W.; et el. (2022) Structure and Function of the Nuclear Pore Complex; Cold Spring Harbor Perspectives in Biology; Vol. 14; No. 12; Art. No. a041264; 10.1101/cshperspect.a041264
• Barnum, George and Hong, Elizabeth J. (2022) Olfactory coding; Current Biology; Vol. 32; No. 23; R1296-R1301; 10.1016/j.cub.2022.10.067
• Boktor, Joseph C.; Adame, Mark D.; et el. (2022) Global metabolic profiles in a non-human primate model of maternal immune activation: implications for neurodevelopmental disorders; Molecular Psychiatry; Vol. 27; No. 12; 4959-4973; PMCID PMC9772216; 10.1038/s41380-022-01752-y
• Goronzy, Isabel N.; Quinodoz, Sofia A.; et el. (2022) Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription; Cell Reports; Vol. 41; No. 9; Art. No. 111730; PMCID PMC9793828; 10.1016/j.celrep.2022.111730
• Kovacs, Levente; Fatalska, Agnieszka; et el. (2022) Targeting Drosophila Sas6 to mitochondria reveals its high affinity for Gorab; Biology Open; Vol. 11; No. 11; Art. No. bio059545; PMCID PMC9836085; 10.1242/bio.059545
• Williams, Rory L. and Murray, Richard M. (2022) Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli; Nature Communications; Vol. 13; Art. No. 6822; PMCID PMC9649629; 10.1038/s41467-022-34361-y
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et el. (2022) A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice; eLife; Vol. 11; Art. No. e81453; PMCID PMC9668333; 10.7554/elife.81453
• Suresh, Pooja; Galstyan, Vahe; et el. (2022) Modeling and mechanical perturbations reveal how spatially regulated anchorage gives rise to spatially distinct mechanics across the mammalian spindle; eLife; Vol. 11; Art. No. e79558; PMCID PMC9642996; 10.7554/elife.79558
• Endo, Fumito; Kasai, Atsushi; et el. (2022) Molecular basis of astrocyte diversity and morphology across the CNS in health and disease; Science; Vol. 378; No. 6619; Art. No. adc9020; 10.1126/science.adc9020
• McGlynn, Shawn Erin; Perkins, Guy; et el. (2022) A Cristae-Like Microcompartment in Desulfobacterota; mBio; Vol. 13; No. 6; Art. No. 01613-22; PMCID PMC9764997; 10.1128/mbio.01613-22
• Bokhari, Rihana S.; Beheshti, Afshin; et el. (2022) Looking on the Horizon; Potential and Unique Approaches to Developing Radiation Countermeasures for Deep Space Travel; Life Sciences in Space Research; Vol. 35; 105-112; 10.1016/j.lssr.2022.08.003
• Rothenberg, Ellen V. (2022) Transcription factors specifically control change; Genes and Development; Vol. 36; No. 21-24; 1097-1099; PMCID PMC9851400; 10.1101/gad.350308.122
• Foy, Susan; Jacoby, Kyle; et el. (2022) 1478 A phase I study of personalized adoptive TCR T cell therapy in patients with solid tumors: safety, efficacy, and T cell trafficking to tumors of non-virally gene edited T cells; Journal for ImmunoTherapy of Cancer; Vol. 10; No. S2; A1536; 10.1136/jitc-2022-sitc2022.1478
• Brugman, Katherine I.; Susoy, Vladislav; et el. (2022) PEZO-1 and TRP-4 mechanosensors are involved in mating behavior in Caenorhabditis elegans; PNAS Nexus; Vol. 1; No. 5; Art. No. pgac213; PMCID PMC9802279; 10.1093/pnasnexus/pgac213
• Vijayan, Vikram; Wang, Zikun; et el. (2022) An internal expectation guides Drosophila egg-laying decisions; Science Advances; Vol. 8; No. 43; eabn3852; 10.1126/sciadv.abn3852
• Boltje, Daan B.; Hoogenboom, Jacob P.; et el. (2022) A cryogenic, coincident fluorescence, electron, and ion beam microscope; eLife; Vol. 11; Art. No. e82891; PMCID PMC9714966; 10.7554/elife.82891
• Guna, Alina; Stevens, Taylor A.; et el. (2022) MTCH2 is a mitochondrial outer membrane protein insertase; Science; Vol. 378; No. 6617; 317-322; PMCID PMC9674023; 10.1126/science.add1856
• Athavale, Soumitra V.; Gao, Shilong; et el. (2022) Enzymatic Nitrogen Insertion into Unactivated C-H Bonds; Journal of the American Chemical Society; Vol. 144; No. 41; 19097-19105; PMCID PMC9612832; 10.1021/jacs.2c08285
• Metskas, Lauren Ann; Wilfong, Rosalie; et el. (2022) Subtomogram averaging for biophysical analysis and supramolecular context; Journal of Structural Biology: X; Vol. 6; Art. No. 100076; PMCID PMC9596874; 10.1016/j.yjsbx.2022.100076
• Dam, Kim-Marie A.; Barnes, Christopher O.; et el. (2022) HIV-1 CD4-binding site germline antibody-Env structures inform vaccine design; Nature Communications; Vol. 13; Art. No. 6123; PMCID PMC9576718; 10.1038/s41467-022-33860-2
• Zocchi, Dhruv; Ye, Emily S.; et el. (2022) Parallel encoding of CO₂ in attractive and aversive glomeruli by selective lateral signaling between olfactory afferents; Current Biology; Vol. 32; No. 19; 4225-4239.e7; PMCID PMC9561050; 10.1016/j.cub.2022.08.025
• Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse embryo model derived exclusively from embryonic stem cells undergoes neurulation and heart development; Cell Stem Cell; Vol. 29; No. 10; 1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
• Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse embryo model derived exclusively from embryonic stem cells undergoes neurulation and heart development; Cell Stem Cell; Vol. 29; No. 10; 1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
• Amadei, Gianluca; Handford, Charlotte E.; et el. (2022) Embryo model completes gastrulation to neurulation and organogenesis; Nature; Vol. 610; No. 7930; 143-153; PMCID PMC9534772; 10.1038/s41586-022-05246-3
• Hutchins, Erica J.; Gandhi, Shashank; et el. (2022) RNA-binding protein Elavl1/HuR is required for maintenance of cranial neural crest specification; eLife; Vol. 11; Art. No. e63600; PMCID PMC9529247; 10.7554/elife.63600
• Puskar, Ryan; Du Truong, Chloe; et el. (2022) Molecular asymmetry of a photosynthetic supercomplex from green sulfur bacteria; Nature Communications; Vol. 13; Art. No. 5824; PMCID PMC9529944; 10.1038/s41467-022-33505-4
• Rothenberg, Ellen V. (2022) The Heart of the Machine: Construction of T Cell Identity, Made Accessible; Journal of Immunology; Vol. 209; No. 7; 1235-1236; 10.4049/jimmunol.2200264
• LeBlanc, Amy K.; Mazcko, Christina N.; et el. (2022) Comparative Oncology Assessment of a Novel Inhibitor of Valosin-Containing Protein in Tumor-Bearing Dogs; Molecular Cancer Therapeutics; Vol. 21; No. 10; 1510-1523; PMCID PMC9538592; 10.1158/1535-7163.mct-22-0167
• Parker, Joseph (2022) Interactions between insect species: their evolution and mechanistic architecture; Current Opinion in Insect Science; Vol. 53; Art. No. 100963; 10.1016/j.cois.2022.100963
• Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem-cell-based human and mouse embryo models; Current Opinion in Genetics and Development; Vol. 76; 101970; PMCID PMC10309046; 10.1016/j.gde.2022.101970
• Guo, Jimmy K. and Guttman, Mitchell (2022) Regulatory non-coding RNAs: everything is possible, but what is important?; Nature Methods; Vol. 19; No. 10; 1156-1159; 10.1038/s41592-022-01629-6
• Spero, Melanie A.; Jones, Jeff; et el. (2022) Mechanisms of chlorate toxicity and resistance in Pseudomonas aeruginosa; Molecular Microbiology; Vol. 118; No. 4; 321-335; PMCID PMC9589919; 10.1111/mmi.14972
• Dai, Wenting; Wang, Zhichao; et el. (2022) Metabolic reprogramming in the OPA1-deficient cells; Cellular and Molecular Life Sciences; Vol. 79; No. 10; Art. No. 517; 10.1007/s00018-022-04542-5
• Siepe, Dirk H.; Henneberg, Lukas T.; et el. (2022) Identification of orphan ligand-receptor relationships using a cell-based CRISPRa enrichment screening platform; eLife; Vol. 11; Art. No. e81398; PMCID PMC9578707; 10.7554/elife.81398
• Keleş, Ümit; Kliemann, Dorit; et el. (2022) Atypical gaze patterns in autistic adults are heterogeneous across but reliable within individuals; Molecular Autism; Vol. 13; No. 1; Art. No. 39; PMCID PMC9508778; 10.1186/s13229-022-00517-2
• Hung, Shao-Min; Wu, Daw-An; et el. (2022) Stronger implicit interference in cognitively healthy older participants with higher risk of Alzheimer’s disease; Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring; Vol. 14; Art. No. e12340; PMCID PMC9489163; 10.1002/dad2.12340
• Guan, Charles; Aflalo, Tyson; et el. (2022) Stability of motor representations after paralysis; eLife; Vol. 11; Art. No. 74478; PMCID PMC9555862; 10.7554/elife.74478
• Hu, Chelsea Y. and Murray, Richard M. (2022) Layered feedback control overcomes performance trade-off in synthetic biomolecular networks; Nature Communications; Vol. 13; Art. No. 5393; PMCID PMC9474519; 10.1038/s41467-022-33058-6
• Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem cell-derived synthetic embryos self-assemble by exploiting cadherin codes and cortical tension; Nature Cell Biology; Vol. 24; No. 9; 1341-1349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
• Jang, Seongmin; Shen, Hao K.; et el. (2022) Structural basis of receptor usage by the engineered capsid AAV-PHP.eB; Molecular Therapy - Methods & Clinical Development; Vol. 26; 343-354; PMCID PMC9382559; 10.1016/j.omtm.2022.07.011
• Goertsen, David; Goeden, Nick; et el. (2022) Targeting the lung epithelium after intravenous delivery by directed evolution of underexplored sites on the AAV capsid; Molecular Therapy - Methods & Clinical Development; Vol. 26; 331-342; PMCID PMC9372736; 10.1016/j.omtm.2022.07.010
• Pakharukova, Natalia; Malmi, Henri; et el. (2022) Archaic chaperone-usher pili self-secrete into superelastic zigzag springs; Nature; Vol. 609; 335-340; 10.1038/s41586-022-05095-0
• Knox, Hailey J.; Rego Campello, Hugo; et el. (2022) Characterization of Binding Site Interactions and Selectivity Principles in the α3β4 Nicotinic Acetylcholine Receptor; Journal of the American Chemical Society; Vol. 144; No. 35; 16101-16117; 10.1021/jacs.2c06495
• Zhang, Yide; Shen, Binglin; et el. (2022) Ultrafast and hypersensitive phase imaging of propagating internodal current flows in myelinated axons and electromagnetic pulses in dielectrics; Nature Communications; Vol. 13; Art. No. 5247; PMCID PMC9448739; 10.1038/s41467-022-33002-8
• Zhang, Haifeng; Shang, Renjie; et el. (2022) Evolution of a chordate-specific mechanism for myoblast fusion; Science Advances; Vol. 8; No. 35; Art. No. eadd2696; 10.1126/sciadv.add2696
• Kastriti, Maria Eleni; Faure, Louis; et el. (2022) Schwann cell precursors represent a neural crest‐like state with biased multipotency; EMBO Journal; Vol. 41; No. 17; Art. no. e108780; PMCID PMC9434083; 10.15252/embj.2021108780
• Wegener, Gunter; Laso-Pérez, Rafael; et el. (2022) Anaerobic Degradation of Alkanes by Marine Archaea; Annual Review of Microbiology; Vol. 76; No. 1; 553-577; 10.1146/annurev-micro-111021-045911
• Chure, Griffin; Banks, Rachel A.; et el. (2022) Anthroponumbers.org: A quantitative database of human impacts on Planet Earth; Patterns; Vol. 3; No. 9; Art. No. 100552; PMCID PMC9481956; 10.1016/j.patter.2022.100552
• Wagle, Mahendra; Zarei, Mahdi; et el. (2022) Brain-wide perception of the emotional valence of light is regulated by distinct hypothalamic neurons; Molecular Psychiatry; Vol. 27; No. 9; 3777-3793; PMCID PMC9613822; 10.1038/s41380-022-01567-x
• Ravanfar, Raheleh; Sheng, Yuling; et el. (2022) Surface cysteines could protect the SARS-CoV-2 main protease from oxidative damage; Journal of Inorganic Biochemistry; Vol. 234; Art. No. 111886; PMCID PMC9161685; 10.1016/j.jinorgbio.2022.111886
• Seo, Jai Woong; Ajenjo, Javier; et el. (2022) Multimodal imaging of capsid and cargo reveals differential brain targeting and liver detargeting of systemically-administered AAVs; Biomaterials; Vol. 288; Art. No. 121701; PMCID PMC9621732; 10.1016/j.biomaterials.2022.121701
• Aronson, Heidi S.; Monteverde, Danielle R.; et el. (2022) Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA; Geobiology; Vol. 20; No. 5; 707-725; 10.1111/gbi.12512
• Parker, Joseph (2022) Transitional morphology and Afrotropical affinity of a bythinoplectine rove beetle from the early Eocene of India (Coleoptera: Staphylinidae: Pselaphinae); Palaeoentomology; Vol. 5; No. 5; 452-460; 10.11646/palaeoentomology.5.5.6
• Gorin, Gennady; Fang, Meichen; et el. (2022) RNA velocity unraveled; PLOS Computational Biology; Vol. 18; No. 9; Art. No. e1010492; PMCID PMC9499228; 10.1371/journal.pcbi.1010492
• Foster, Jamie S. and McFall-Ngai, Margaret J. (2022) Introduction to the special issue in honor of the contributions of Lynn Margulis (1938-2011) Lynn Margulis: a 20th-Century scientist and a visionary of biology; Symbiosis; 10.1007/s13199-022-00867-8
• Liang, Xuan; Weberling, Antonia; et el. (2022) E-cadherin mediates apical membrane initiation site localisation during de novo polarisation of epithelial cavities; EMBO Journal; Art No. e111021; 10.15252/embj.2022111021
• Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain–Computer Interfaces for Treatment of Focal Dystonia; Movement Disorders; 10.1002/mds.29178
• Yang, Bin; Karigo, Tomomi; et el. (2022) Transformations of neural representations in a social behaviour network; Nature; Vol. 608; No. 7924; 741-749; PMCID PMC9529293; 10.1038/s41586-022-05057-6
• Harrison, Neil L.; Abbott, Geoffrey W.; et el. (2022) How many SARS-CoV-2 “viroporins” are really ion channels?; Communications Biology; Vol. 5; No. 1; 10.1038/s42003-022-03669-2
• Sawada, Masahiro; Adolphs, Ralph; et el. (2022) Mapping effective connectivity of human amygdala subdivisions with intracranial stimulation; Nature Communications; Vol. 13; No. 1; Art. No. 4909; 10.1038/s41467-022-32644-y
• Yang, Chien-I; Zhu, Zikun; et el. (2022) System-wide analyses reveal essential roles of N-terminal protein modification in bacterial membrane integrity; iScience; Vol. 25; No. 8; Art. No. 104756; PMCID PMC9356101; 10.1016/j.isci.2022.104756
• Schneider, René; Ehrhardt, David W.; et el. (2022) Tethering of cellulose synthase to microtubules dampens mechano-induced cytoskeletal organization in Arabidopsis pavement cells; Nature Plants; Vol. 8; No. 9; 1064-1073; 10.1038/s41477-022-01218-7
• Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Rubisco forms a lattice inside alpha-carboxysomes; Nature Communications; Vol. 13; No. 1; Art. No. 4863; 10.1038/s41467-022-32584-7
• Murrow, Lyndsay M.; Weber, Robert J.; et el. (2022) Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution; Cell Systems; Vol. 13; No. 8; 644-664.e8; PMCID PMC9590200; 10.1016/j.cels.2022.06.005
• Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Discovery of a Novel Inner Membrane-Associated Bacterial Structure Related to the Flagellar Type III Secretion System; Journal of Bacteriology; Vol. 204; No. 8; e0014422; PMCID PMC9380563; 10.1128/jb.00144-22
• Barnes, Christopher O.; Schoofs, Till; et el. (2022) A naturally arising broad and potent CD4-binding site antibody with low somatic mutation; Science Advances; Vol. 8; No. 32; Art. No. eabp8155; 10.1126/sciadv.abp8155
• Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain-Computer Interfaces for Treatment of Focal Dystonia; Movement Disorders; 10.1002/mds.29178
• Galton, Riley; Fejes-Tóth, Katalin; et el. (2022) Co-option of the piRNA pathway to regulate neural crest specification; Science Advances; Vol. 8; No. 32; Art. No. abn1441; 10.1126/sciadv.abn1441
• Lisitskaya, Lidiya; Shin, Yeonoh; et el. (2022) Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity; Nature Communications; Vol. 13; Art. No. 4624; PMCID PMC9360449; 10.1038/s41467-022-32079-5
• Chai, Cynthia M.; Park, Heenam; et el. (2022) Brain-wide bidirectional neuropeptide modulation of individual neuron classes regulates a developmental decision; Current Biology; Vol. 32; No. 15; 3365-3373; PMCID PMC10588560; 10.1016/j.cub.2022.05.048
• Cohen, Alexander A.; van Doremalen, Neeltje; et el. (2022) Mosaic RBD nanoparticles protect against challenge by diverse sarbecoviruses in animal models; Science; Vol. 377; No. 6606; Art. No. eabq0839; PMCID PMC9273039; 10.1126/science.abq0839
• Kim, Bong Heon; Kim, Min Kyung; et el. (2022) Crystal structure of the Ate1 arginyl-tRNA-protein transferase and arginylation of N-degron substrates; Proceedings of the National Academy of Sciences of the United States of America; Vol. 119; No. 31; Art. No. e2209597119; PMCID PMC9351520; 10.1073/pnas.2209597119
• Meister, Markus (2022) Learning, fast and slow; Current Opinion in Neurobiology; Vol. 75; Art. No. 102555; 10.1016/j.conb.2022.102555
• Andrews, Brenda; Chang, Jae-Byum; et el. (2022) Imaging cell biology; Nature Cell Biology; Vol. 24; No. 8; 1180-1185; 10.1038/s41556-022-00960-6
• Boninsegna, Lorenzo; Yildirim, Asli; et el. (2022) Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations; Nature Methods; Vol. 19; No. 8; 938-949; 10.1038/s41592-022-01527-x
• Schwartzman, Julia A.; Ebrahimi, Ali; et el. (2022) Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles; Current Biology; Vol. 32; No. 14; 3059-3069.e7; PMCID PMC9496226; 10.1016/j.cub.2022.06.011
• Macabenta, Frank; Sun, Hsuan-Te; et el. (2022) BMP-gated cell-cycle progression drives anoikis during mesenchymal collective migration; Developmental Cell; Vol. 57; No. 14; 1683-1693; PMCID PMC9339487; 10.1016/j.devcel.2022.05.017
• Wang, Zitong Jerry and Thomson, Matt (2022) Localization of signaling receptors maximizes cellular information acquisition in spatially structured natural environments; Cell Systems; Vol. 13; No. 7; 530-546; 10.1016/j.cels.2022.05.004
• Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2022) Engineered AAVs for non-invasive gene delivery to rodent and non-human primate nervous systems; Neuron; Vol. 110; No. 14; 2242-2257; PMCID PMC9308721; 10.1016/j.neuron.2022.05.003
• Lapteva, Anna P.; Sarraf, Namita; et el. (2022) DNA Strand-Displacement Temporal Logic Circuits; Journal of the American Chemical Society; Vol. 144; No. 27; 12443-12449; PMCID PMC9284558; 10.1021/jacs.2c04325
• Kajikawa, Koichiro; Hulse, Brad K.; et el. (2022) UP-DOWN states and ripples differentially modulate membrane potential dynamics across DG, CA3, and CA1 in awake mice; eLife; Vol. 11; Art.No. 69596; PMCID PMC9275824; 10.7554/elife.69596
• Tribby, Ariana L.; Bois, Justin S.; et el. (2022) Hydrocarbon Tracers Suggest Methane Emissions from Fossil Sources Occur Predominately Before Gas Processing and That Petroleum Plays Are a Significant Source; Environmental Science and Technology; Vol. 56; No. 13; 9623-9631; PMCID PMC9260955; 10.1021/acs.est.2c00927
• Wang, F.; Li, S.; et el. (2022) P97/VCP ATPase inhibitors can rescue p97 mutation-linked motor neuron degeneration; Brain Communications; Vol. 4; No. 4; Art. No. fcac176; PMCID PMC9294923; 10.1093/braincomms/fcac176
• Dam, Kim-Marie A.; Mutia, Patricia S.; et el. (2022) Comparing methods for immobilizing HIV-1 SOSIPs in ELISAs that evaluate antibody binding; Scientific Reports; Vol. 12; Art. No. 11172; PMCID PMC9247892; 10.1038/s41598-022-15506-x
• Speth, Daan R.; Yu, Feiqiao B.; et el. (2022) Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily; ISME Journal; Vol. 16; 1750-1764; 10.1038/s41396-022-01222-x
• Challis, Rosemary C.; Ravindra Kumar, Sripriya; et el. (2022) Adeno-Associated Virus Toolkit to Target Diverse Brain Cells; Annual Review of Neuroscience; Vol. 45; 447-469; 10.1146/annurev-neuro-111020-100834
• Heryakusuma, Christian; Susanti, Dwi; et el. (2022) A Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic Archaeon; Journal of Bacteriology; Vol. 204; No. 7; Art. No. e00078-22; PMCID PMC9295563; 10.1128/jb.00078-22
• Jhaveri, Nikita; van den Berg, Wouter; et el. (2022) Genome annotation of Caenorhabditis briggsae by TEC-RED identifies new exons, paralogs, and conserved and novel operons; G3: Genes, Genomes, Genetics; Vol. 12; No. 7; Art. No. jkac101; PMCID PMC9258526; 10.1093/g3journal/jkac101
• Tookmanian, Elise; Junghans, Lisa; et el. (2022) Hopanoids Confer Robustness to Physicochemical Variability in the Niche of the Plant Symbiont Bradyrhizobium diazoefficiens; Journal of Bacteriology; Vol. 204; No. 7; jb.00442-21; PMCID PMC9295548; 10.1128/jb.00442-21
• Koontz, Alison; Urrutia, Hugo A.; et el. (2022) Retroviral lineage analysis reveals dual contribution from ectodermal placodes and neural crest cells to avian olfactory sensory and GnRH neurons; Natural Sciences; Vol. 2; No. 3; Art. No. e20210037; PMCID PMC9605686; 10.1002/ntls.20210037
• Ding, Fangyuan; Su, Christina J.; et el. (2022) Dynamics and functional roles of splicing factor autoregulation; Cell Reports; Vol. 39; No. 12; Art. No. 110985; PMCID PMC9262138; 10.1016/j.celrep.2022.110985
• Byrge, Lisa; Kliemann, Dorit; et el. (2022) Video-evoked fMRI BOLD responses are highly consistent across different data acquisition sites; Human Brain Mapping; Vol. 43; No. 9; 2972-2991; PMCID PMC9120552; 10.1002/hbm.25830
• Yu, Hang; Speth, Daan R.; et el. (2022) Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep; Applied and Environmental Microbiology; Vol. 88; No. 11; Art. No. e0210921; PMCID PMC9195934; 10.1128/aem.02109-21
• Bley, Christopher J.; Nie, Si; et el. (2022) Architecture of the cytoplasmic face of the nuclear pore; Science; Vol. 376; No. 6598; Art. No. abm9129; PMCID PMC9348906; 10.1126/science.abm9129
• Bozhanova, Nina G.; Flyak, Andrew I.; et el. (2022) Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals; Nature Communications; Vol. 13; Art. No. 3178; PMCID PMC9177688; 10.1038/s41467-022-30865-9
• Glynn, Allison T.; Davidson, Samuel R.; et el. (2022) Developmental Self-Assembly of a DNA Ring with Stimulus-Responsive Size and Growth Direction; Journal of the American Chemical Society; Vol. 144; No. 22; 10075-10079; PMCID PMC9185747; 10.1021/jacs.2c03853
• Nicolas, William J.; Fäßler, Florian; et el. (2022) Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks; Current Biology; Vol. 32; No. 11; 2375-2389; PMCID PMC9240970; 10.1016/j.cub.2022.04.024
• Wang, Feng; Li, Shan; et el. (2022) Sulforaphane is Synergistic with CB‐5083 and Inhibits Colony Formation of CB‐5083‐Resistant HCT116 Cells; ChemMedChem; Vol. 17; No. 11; Art. No. e202200030; 10.1002/cmdc.202200030
• Tan, Chieh-Hsiang; Park, Heenam; et el. (2022) Loss of famh-136/ FAM136A results in minor locomotion and behavioral changes in Caenorhabditis elegans; microPublication Biology; Vol. 2022; Art. No. 000553; PMCID PMC9163966; 10.17912/micropub.biology.000553
• Wandelt, Sarah K.; Kellis, Spencer; et el. (2022) Decoding grasp and speech signals from the cortical grasp circuit in a tetraplegic human; Neuron; Vol. 110; No. 11; 1777-1787; PMCID PMC9186423; 10.1016/j.neuron.2022.03.009
• Peck, Ariana; Carter, Stephen D.; et el. (2022) Montage electron tomography of vitrified specimens; Journal of Structural Biology; Vol. 214; No. 2; 107860; PMCID PMC10081539; 10.1016/j.jsb.2022.107860
• Livingston, Jadzia; Spero, Melanie A.; et el. (2022) Visualization of mRNA Expression in Pseudomonas aeruginosa Aggregates Reveals Spatial Patterns of Fermentative and Denitrifying Metabolism; Applied and Environmental Microbiology; Vol. 88; No. 11; Art. No. aem.00439-22; 10.1128/aem.00439-22
• Meirelles, Lucas A. and Newman, Dianne K. (2022) Phenazines and toxoflavin act as interspecies modulators of resilience to diverse antibiotics; Molecular Microbiology; Vol. 117; No. 6; 1384-1404; PMCID PMC10249331; 10.1111/mmi.14915
• Bostick, John W.; Schonhoff, Aubrey M.; et el. (2022) Gut microbiome-mediated regulation of neuroinflammation; Current Opinion in Immunology; Vol. 76; Art. No. 102177; PMCID PMC9167715; 10.1016/j.coi.2022.102177
• Andersen, Richard A. and Aflalo, Tyson (2022) Preserved cortical somatotopic and motor representations in tetraplegic humans; Current Opinion in Neurobiology; Vol. 74; Art. No. 102547; PMCID PMC9167753; 10.1016/j.conb.2022.102547
• Naragon, Thomas H.; Wagner, Julian M.; et el. (2022) Parallel evolutionary paths of rove beetle myrmecophiles: replaying a deep-time tape of life; Current Opinion in Insect Science; Vol. 51; Art. No. 100903; 10.1016/j.cois.2022.100903
• Case, Nicola T.; Song, Min; et el. (2022) Exploring Space via Astromycology: A Report on the CIFAR Programs Earth 4D and Fungal Kingdom Inaugural Joint Meeting; Astrobiology; Vol. 22; No. 6; 637-640; PMCID PMC9233531; 10.1089/ast.2021.0186
• Tjahjono, Nikki; Jin, Yihan; et el. (2022) Letting the little light of mind shine: Advances and future directions in neurochemical detection; Neuroscience Research; Vol. 179; 65-78; PMCID PMC9508992; 10.1016/j.neures.2021.11.012
• Chen, Xiaoqiao; Chen, Sisi; et el. (2022) Minimal gene set discovery in single-cell mRNA-seq datasets with ActiveSVM; Nature Computational Science; Vol. 2; No. 6; 387-398; 10.1038/s43588-022-00263-8
• Cryan, John F. and Mazmanian, Sarkis K. (2022) Microbiota–brain axis: Context and causality; Science; Vol. 376; No. 6596; 938-939; 10.1126/science.abo4442
• Lingappa, Usha F.; Stein, Nathaniel T.; et el. (2022) Early impacts of climate change on a coastal marine microbial mat ecosystem; Science Advances; Vol. 8; No. 21; Art. No. eabm7826; PMCID PMC9140962; 10.1126/sciadv.abm7826
• Papdogiannis, Vasileios; Pennati, Alessandro; et el. (2022) Hmx gene conservation identifies the origin of vertebrate cranial ganglia; Nature; Vol. 605; No. 7911; 701-705; PMCID PMC10214386; 10.1038/s41586-022-04742-w
• Porter, Nicholas J.; Danelius, Emma; et el. (2022) Biocatalytic Carbene Transfer Using Diazirines; Journal of the American Chemical Society; Vol. 144; No. 20; 8892-8896; PMCID PMC9205183; 10.1021/jacs.2c02723
• Chai, Cynthia M.; Torkashvand, Mahdi; et el. (2022) Interneuron control of C. elegans developmental decision-making; Current Biology; Vol. 32; No. 10; 2316-2324; PMCID PMC9270850; 10.1016/j.cub.2022.03.077
• Zhou, Wen; Gao, Fan; et el. (2022) Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b; Science Immunology; Vol. 7; No. 71; eabm1920; PMCID PMC9273332; 10.1126/sciimmunol.abm1920
• Molina, Rosana S.; Rix, Gordon; et el. (2022) In vivo hypermutation and continuous evolution; Nature Reviews Methods Primers; Vol. 2; Art. No. 36; 10.1038/s43586-022-00119-5
• Muthusamy, Anand K.; Kim, Charlene H.; et el. (2022) Three Mutations Convert the Selectivity of a Protein Sensor from Nicotinic Agonists to S-Methadone for Use in Cells, Organelles, and Biofluids; Journal of the American Chemical Society; Vol. 144; No. 19; 8480-8486; PMCID PMC9121368; 10.1021/jacs.2c02323
• Su, Christina J.; Murugan, Arvind; et el. (2022) Ligand-receptor promiscuity enables cellular addressing; Cell Systems; Vol. 13; No. 5; 408-425; PMCID PMC10897978; 10.1016/j.cels.2022.03.001
• Klumpe, Heidi E.; Langley, Matthew A.; et el. (2022) The context-dependent, combinatorial logic of BMP signaling; Cell Systems; Vol. 13; No. 5; 388-407; PMCID PMC9127470; 10.1016/j.cels.2022.03.002
• Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Novel transient cytoplasmic rings stabilize assembling bacterial flagellar motors; EMBO Journal; Vol. 41; No. 10; Art. No. e109523; PMCID PMC9108667; 10.15252/embj.2021109523
• Zhang, Gang; Wang, Feng; et el. (2022) Discovery of small-molecule inhibitors of RUVBL1/2 ATPase; Bioorganic and Medicinal Chemistry; Vol. 62; Art. No. 116726; PMCID PMC9034851; 10.1016/j.bmc.2022.116726
• Davison, Helen R.; Pilgrim, Jack; et el. (2022) Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group; Nature Communications; Vol. 13; Art. No. 2630; PMCID PMC9098888; 10.1038/s41467-022-30385-6
• Shinya, Ryoji; Sun, Simo; et el. (2022) Possible stochastic sex determination in Bursaphelenchus nematodes; Nature Communications; Vol. 13; Art. No. 2574; 10.1038/s41467-022-30173-2
• Aflalo, Tyson; Zhang, Carey; et el. (2022) Implicit mechanisms of intention; Current Biology; Vol. 32; No. 9; 2051-2060; PMCID PMC9090994; 10.1016/j.cub.2022.03.047
• Fu, Zhongzheng; Beam, Danielle; et el. (2022) The geometry of domain-general performance monitoring in the human medial frontal cortex; Science; Vol. 376; No. 6593; Art. No. abm9922; 10.1126/science.abm9922
• Mondragón-Palomino, Octavio; Poceviciute, Roberta; et el. (2022) Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa; Proceedings of the National Academy of Sciences; Vol. 119; No. 18; Art. No. e2118483119; PMCID PMC9171773; 10.1073/pnas.2118483119
• Jacobs, Jana L.; Bain, William; et el. (2022) Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcome; Clinical Infectious Diseases; Vol. 74; No. 9; 1525-1533; PMCID PMC9070832; 10.1093/cid/ciab686
• Zhang, Mark G. and Sternberg, Paul W. (2022) Both entry to and exit from diapause arrest in Caenorhabditis elegans are regulated by a steroid hormone pathway; Development; Vol. 149; No. 9; Art. No. dev200173; PMCID PMC9148571; 10.1242/dev.200173
• Cable, Jennifer; Rappuoli, Rino; et el. (2022) Innovative vaccine approaches—a Keystone Symposia report; Annals of the New York Academy of Sciences; Vol. 1511; No. 1; 59-86; 10.1111/nyas.14739
• Quinodoz, Sofia A. and Guttman, Mitchell (2022) Essential Roles for RNA in Shaping Nuclear Organization; Cold Spring Harbor Perspectives in Biology; Vol. 14; No. 5; a039719; PMCID PMC9159268; 10.1101/cshperspect.a039719
• Casazza, Joseph P.; Cale, Evan M.; et el. (2022) Safety and tolerability of AAV8 delivery of a broadly neutralizing antibody in adults living with HIV: a phase 1, dose-escalation trial; Nature Medicine; Vol. 28; No. 5; 1022-1030; 10.1038/s41591-022-01762-x
• Moses, Lambda and Pachter, Lior (2022) Museum of spatial transcriptomics; Nature Methods; Vol. 19; No. 5; 534-546; 10.1038/s41592-022-01409-2
• Poole, William; Pandey, Ayush; et el. (2022) BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts; PLoS Computational Biology; Vol. 18; No. 4; Art. No. e1009987; PMCID PMC9060376; 10.1371/journal.pcbi.1009987
• Tran, Steven and Prober, David A. (2022) Validation of Candidate Sleep Disorder Risk Genes Using Zebrafish; Frontiers in Molecular Neuroscience; Vol. 15; Art. No. 873520; PMCID PMC9021570; 10.3389/fnmol.2022.873520
• Xu, Shuwa; Sergeeva, Alina P.; et el. (2022) Affinity requirements for control of synaptic targeting and neuronal cell survival by heterophilic IgSF cell adhesion molecules; Cell Reports; Vol. 39; No. 1; Art. No. 110618; PMCID PMC9078203; 10.1016/j.celrep.2022.110618
• Li, Shan; Wang, Feng; et el. (2022) NMS-873 Leads to Dysfunctional Glycometabolism in A p97-Independent Manner in HCT116 Colon Cancer Cells; Pharmaceutics; Vol. 14; No. 4; 764; PMCID PMC9024726; 10.3390/pharmaceutics14040764
• Greenwald, Noah F.; Miller, Geneva; et el. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning; Nature Biotechnology; Vol. 40; No. 4; 555-565; PMCID PMC9010346; 10.1038/s41587-021-01094-0
• Fan, Jiang-peng; Geng, Hui-zhen; et el. (2022) Age-dependent alterations in key components of the nigrostriatal dopaminergic system and distinct motor phenotypes; Acta Pharmacologica Sinica; Vol. 43; No. 4; 862-875; PMCID PMC8975991; 10.1038/s41401-021-00713-5
• Agapite, Julie; Albou, Laurent-Philippe; et el. (2022) Harmonizing model organism data in the Alliance of Genome Resources; Genetics; Vol. 220; No. 4; Art. No. iyac022; PMCID PMC8982023; 10.1093/genetics/iyac022
• Kanwal, Jessleen K. and Parker, Joseph (2022) The neural basis of interspecies interactions in insects; Current Opinion in Insect Science; Vol. 50; Art. No. 100891; 10.1016/j.cois.2022.100891
• Davis, Paul; Zarowiecki, Magdalena; et el. (2022) WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans; Genetics; Vol. 220; No. 4; Art. No. iyac003; PMCID PMC8982018; 10.1093/genetics/iyac003
• Bali, Namrata; Lee, Hyung-Kook (Peter); et el. (2022) Sticks and Stones, a conserved cell surface ligand for the Type IIa RPTP Lar, regulates neural circuit wiring in Drosophila; eLife; Vol. 11; Art. No. e71469; PMCID PMC9000958; 10.7554/eLife.71469
• Kliemann, Dorit; Adolphs, Ralph; et el. (2022) Caltech Conte Center, a multimodal data resource for exploring social cognition and decision-making; Scientific Data; Vol. 9; Art. No. 138; PMCID PMC8971509; 10.1038/s41597-022-01171-2
• da Veiga Beltrame, Eduardo; Arnaboldi, Valerio; et el. (2022) WormBase single-cell tools; Bioinformatics Advances; Vol. 2; No. 1; vbac018; PMCID PMC9258504; 10.1093/bioadv/vbac018
• Yang, Huan; Sibilla, Caroline; et el. (2022) Clueless/CLUH regulates mitochondrial fission by promoting recruitment of Drp1 to mitochondria; Nature Communications; Vol. 13; No. 1; Art. No. 1582; 10.1038/s41467-022-29071-4
• Miller, David C.; Lal, Ravi G.; et el. (2022) Biocatalytic One-Carbon Ring Expansion of Aziridines to Azetidines via a Highly Enantioselective [1,2]-Stevens Rearrangement; Journal of the American Chemical Society; Vol. 144; No. 11; 4739-4745; PMCID PMC9022672; 10.1021/jacs.2c00251
• Wareham, Lauren K.; Liddelow, Shane A.; et el. (2022) Solving neurodegeneration: common mechanisms and strategies for new treatments; Molecular Neurodegeneration; Vol. 17; Art. No. 23; PMCID PMC8935795; 10.1186/s13024-022-00524-0
• Wittmann, Bruce J.; Johnston, Kadina E.; et el. (2022) evSeq: Cost-Effective Amplicon Sequencing of Every Variant in a Protein Library; ACS Synthetic Biology; Vol. 11; No. 3; 1313-1324; 10.1021/acssynbio.1c00592
• Wang, Feng; Li, Shan; et el. (2022) Temporal proteomics reveal specific cell cycle oncoprotein downregulation by p97/VCP inhibition; Cell Chemical Biology; Vol. 29; No. 3; 517-529; PMCID PMC8934257; 10.1016/j.chembiol.2021.11.005
• Ma, Yitong; Budde, Mark W.; et el. (2022) Synthetic mammalian signaling circuits for robust cell population control; Cell; Vol. 185; No. 6; 967-979; PMCID PMC8995209; 10.1016/j.cell.2022.01.026
• Wang, Tongtong; Pool, Allan-Hermann; et el. (2022) Serotonergic fast lane from taste detection to preparatory digestive actions; Neuron; Vol. 110; No. 6; 907-909; 10.1016/j.neuron.2022.02.023
• Gorin, Gennady and Pachter, Lior (2022) Modeling bursty transcription and splicing with the chemical master equation; Biophysical Journal; Vol. 121; No. 6; 1056-1069; 10.1016/j.bpj.2022.02.004
• Namiki, Shigehiro; Ros, Ivo G.; et el. (2022) A population of descending neurons that regulates the flight motor of Drosophila; Current Biology; Vol. 32; No. 5; 1189-1196; PMCID PMC9206711; 10.1016/j.cub.2022.01.008
• Flamholz, Avi I. and Newman, Dianne K. (2022) Microbial communities: The metabolic rate is the trait; Current Biology; Vol. 32; No. 5; R215-R218; 10.1016/j.cub.2022.02.002
• Schonhoff, Aubrey M. and Mazmanian, Sarkis K. (2022) Lung microbes mediate spinal-cord autoimmunity; Nature; Vol. 603; No. 7899; 38-40; 10.1038/d41586-022-00468-x
• Liu, Mengyu; Kim, Dong-Wook; et el. (2022) Make war not love: The neural substrate underlying a state-dependent switch in female social behavior; Neuron; Vol. 110; No. 5; 841-856; PMCID PMC8897222; 10.1016/j.neuron.2021.12.002
• Cui, Lian; Guo, Jeff; et el. (2022) Glutamate in primary afferents is required for itch transmission; Neuron; Vol. 110; No. 5; 809-823; PMCID PMC8898340; 10.1016/j.neuron.2021.12.007
• Sacher, Wesley D.; Chen, Fu-Der; et el. (2022) Optical phased array neural probes for beam-steering in brain tissue; Optics Letters; Vol. 47; No. 5; 1073-1076; 10.1364/OL.441609
• Shinoda, Kenta; Choe, Andrea; et el. (2022) Nematode ascarosides attenuate mammalian type 2 inflammatory responses; Proceedings of the National Academy of Sciences of the United States of America; Vol. 119; No. 9; Art. No. e2108686119; PMCID PMC8892368; 10.1073/pnas.2108686119
• Cohen, Sarah M.; Wrobel, Chester J. J.; et el. (2022) Formation and function of dauer ascarosides in the nematodes Caenorhabditis briggsae and Caenorhabditis elegans; G3; Vol. 12; No. 3; Art. No. jkac014; PMCID PMC8895998; 10.1093/g3journal/jkac014
• Jachowicz, Joanna W.; Strehle, Mackenzie; et el. (2022) Xist spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide silencing and specificity to the X chromosome; Nature Structural and Molecular Biology; Vol. 29; No. 3; 239-249; PMCID PMC8969943; 10.1038/s41594-022-00739-1
• Kim, Jongmin; Quijano, Juan F.; et el. (2022) Synthetic logic circuits using RNA aptamer against T7 RNA polymerase; Biotechnology Journal; Vol. 17; No. 3; Art. No. 2000449; 10.1002/biot.202000449
• Stewart Campbell, A.; Needham, Brittany D.; et el. (2022) Safety and target engagement of an oral small-molecule sequestrant in adolescents with autism spectrum disorder: an open-label phase 1b/2a trial; Nature Medicine; Vol. 28; No. 3; 528-534; 10.1038/s41591-022-01683-9
• Perry, Elena K. and Newman, Dianne K. (2022) Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field; Applied and Environmental Microbiology; Vol. 88; No. 6; Art. No. e02320-21; PMCID PMC8939311; 10.1128/aem.02320-21
• Bostick, John W. and Mazmanian, Sarkis K. (2022) Impaired gut barrier affects microglia health; Nature Neuroscience; Vol. 25; No. 3; 268-270; 10.1038/s41593-022-01028-2
• Perry, Elena K.; Meirelles, Lucas A.; et el. (2022) From the soil to the clinic: the impact of microbial secondary metabolites on antibiotic tolerance and resistance; Nature Reviews Microbiology; Vol. 20; No. 3; 129-142; PMCID PMC8857043; 10.1038/s41579-021-00620-w
• Garg, Pranjal; Tan, Chieh-Hsiang; et el. (2022) DiI staining of sensory neurons in the entomopathogenic nematode Steinernema hermaphroditum; microPublication Biology; PMCID PMC8874337; 10.17912/micropub.biology.000516
• Needham, Brittany D.; Funabashi, Masanori; et el. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice; Nature; Vol. 602; No. 7899; 647-653; PMCID PMC9170029; 10.1038/s41586-022-04396-8
• Ichiki, Takako; Wang, Tongtong; et el. (2022) Sensory representation and detection mechanisms of gut osmolality change; Nature; Vol. 602; No. 7897; 468-474; 10.1038/s41586-021-04359-5
• Vlahos, Alexander E.; Kang, Jeewoo; et el. (2022) Protease-controlled secretion and display of intercellular signals; Nature Communications; Vol. 13; Art. No. 912; PMCID PMC8854555; 10.1038/s41467-022-28623-y
• Shen, Cheng; Lamba, Adiyant; et el. (2022) Stain-free detection of embryo polarization using deep learning; Scientific Reports; Vol. 12; Art. No. 2404; 10.1038/s41598-022-05990-6
• Guttman, Mitchell (2022) How non-coding RNAs shape nuclear structure to regulate gene expression; Biophysical Journal; Vol. 121; No. 3; 167a; 10.1016/j.bpj.2021.11.1898
• Salmon, Gabe and Phillips, Rob (2022) Reproducibility, stochasticity, and geometry in a lattice of cross-feeding microbial cells; Biophysical Journal; Vol. 121; No. 3; 120a; 10.1016/j.bpj.2021.11.2086
• Larios, David A.; Phillips, Rob; et el. (2022) Reconstituting the nonequilibrium biophysics of the LECA cytoskeleton in active matter; Biophysical Journal; Vol. 121; No. 3; 521a; 10.1016/j.bpj.2021.11.2744
• Arnold, Frances H. (2022) Innovation by evolution: bringing new chemistry to life; Biophysical Journal; Vol. 121; No. 3; 177a; 10.1016/j.bpj.2021.11.1846
• Nandi, Purbasha; Li, Shan; et el. (2022) Mechanism of the alteration in domain-domain communications in human p97/VCP atpase; Biophysical Journal; Vol. 121; No. 3; 298a; 10.1016/j.bpj.2021.11.1259
• Suresh, Pooja; Galstyan, Vahe; et el. (2022) Connections distributed within 3 μm of chromosomes are necessary and sufficient for the kinetochore-fiber’s robust anchorage in the mammalian spindle; Biophysical Journal; Vol. 121; No. 3; 448a-449a; 10.1016/j.bpj.2021.11.536
• Duarte, Ana I.; Jin Lee, Heun; et el. (2022) Measuring energy consumption through space and time in an active matter system of cytoskeletal motors and filaments; Biophysical Journal; Vol. 121; No. 3; 521a-522a; 10.1016/j.bpj.2021.11.2745
• Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Bacterial microcompartment organization by cryo electron tomography and high-resolution subtomogram averaging; Biophysical Journal; Vol. 121; No. 3; 168a; 10.1016/j.bpj.2021.11.1892
• Hueschen, Christina; Segev Zarko, Li-av; et el. (2022) Distinct self-organized actin patterns explain diverse parasite gliding modes; Biophysical Journal; Vol. 121; No. 3; 314a; 10.1016/j.bpj.2021.11.1183
• Stundl, Jan; Soukup, Vladimir; et el. (2022) Efficient CRISPR Mutagenesis in Sturgeon Demonstrates Its Utility in Large, Slow-Maturing Vertebrates; Frontiers in Cell and Developmental Biology; Vol. 10; Art. No. 750833; PMCID PMC8867083; 10.3389/fcell.2022.750833
• Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer; Nature Communications; Vol. 13; Art. No. 732; PMCID PMC8826976; 10.1038/s41467-022-28424-3
• Weber, Timm; Potthoff, Julian; et el. (2022) Analysis of antibodies from HCV elite neutralizers identifies genetic determinants of broad neutralization; Immunity; Vol. 55; No. 2; 341-354; PMCID PMC10089621; 10.1016/j.immuni.2021.12.003
• Tanaka, Shiho; Olson, C. Anders; et el. (2022) Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display; Cell Reports; Vol. 38; No. 6; Art. No. 110348; PMCID PMC8769934; 10.1016/j.celrep.2022.110348
• Wang, Feng; Li, Shan; et el. (2022) The p97 Inhibitor UPCDC-30245 Blocks Endo-Lysosomal Degradation; Pharmaceuticals; Vol. 15; No. 2; Art. No. 204; PMCID PMC8880557; 10.3390/ph15020204
• Lee, Daniel A.; Oikonomou, Grigorios; et el. (2022) Large-scale Analysis of Sleep in Zebrafish; Bio-protocol; Vol. 12; No. 3; Art. No. e4313; 10.21769/bioprotoc.4313
• Dunipace, Leslie; Newcomb, Susan; et el. (2022) Brinker levels regulated by a promoter proximal element support germ cell homeostasis; Development; Vol. 149; No. 3; Art. No. dev199890; PMCID PMC8918798; 10.1242/dev.199890
• Tadmor, Arbel D. and Phillips, Rob (2022) MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study; Bioinformatics; Vol. 38; No. 3; 631-647; PMCID PMC10060711; 10.1093/bioinformatics/btab703
• Duethorn, Binyamin; Groll, Fabian; et el. (2022) Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolism; Nature Communications; Vol. 13; Art. No. 610; PMCID PMC8807836; 10.1038/s41467-022-28139-5
• Himmler, Tobias; Crémière, Antoine; et el. (2022) Putative fossils of chemotrophic microbes preserved in seep carbonates from Vestnesa Ridge, off northwest Svalbard, Norway; Geology; Vol. 50; No. 2; 169-173; 10.1130/g49620.1
• Gayoso, Adam; Lopez, Romain; et el. (2022) A Python library for probabilistic analysis of single-cell omics data; Nature Biotechnology; Vol. 40; No. 2; 163-166; 10.1038/s41587-021-01206-w
• Duan, Yangyang; Ye, Tao; et el. (2022) Brain-wide Cas9-mediated cleavage of a gene causing familial Alzheimer’s disease alleviates amyloid-related pathologies in mice; Nature Biomedical Engineering; Vol. 6; No. 2; 168-180; 10.1038/s41551-021-00759-0
• Savela, Emily S.; Winnett, Alexander Viloria; et el. (2022) Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection; Journal of Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID PMC8849374; 10.1128/JCM.01785-21
• Stiles, Noelle R. B.; Tanguay, Armand R., Jr.; et el. (2022) Crossmodal Postdiction: Conscious Perception as Revisionist History; Journal of Perceptual Imaging; Vol. 5; Art. No. jpi0150; PMCID PMC9028020; 10.2352/j.percept.imaging.2022.5.000403
• Wu, Fabai; Speth, Daan R.; et el. (2022) Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes; Nature Microbiology; Vol. 7; No. 2; 200-212; 10.1038/s41564-021-01039-y
• El-Nachef, Wael N.; Hu, Claire; et el. (2022) Whole gut imaging allows quantification of all enteric neurons in the adult zebrafish intestine; Neurogastroenterology and Motility; Vol. 34; No. 2; Art. No. e14292; PMCID PMC8799505; 10.1111/nmo.14292
• McCaffrey, Erin F.; Donato, Michele; et el. (2022) The immunoregulatory landscape of human tuberculosis granulomas; Nature Immunology; Vol. 23; No. 2; 318-329; PMCID PMC8810384; 10.1038/s41590-021-01121-x
• Williams, Ruth M.; Lukoseviciute, Martyna; et el. (2022) Single-cell atlas of early chick development reveals gradual segregation of neural crest lineage from the neural plate border during neurulation; eLife; Vol. 11; Art. No. e74464; PMCID PMC8798042; 10.7554/eLife.74464
• Dahlstrom, Kurt M. and Newman, Dianne K. (2022) Soil bacteria protect fungi from phenazines by acting as toxin sponges; Current Biology; Vol. 32; No. 2; 275-288; 10.1016/j.cub.2021.11.002
• Pandey, Ayush and Murray, Richard M. (2022) Robustness guarantees for structured model reduction of dynamical systems with applications to biomolecular models; International Journal of Robust and Nonlinear Control; 10.1002/rnc.6013
• Schildknecht, Dominik; Popova, Anastasia N.; et el. (2022) Reinforcement learning reveals fundamental limits on the mixing of active particles; Soft Matter; Vol. 18; No. 3; 617-625; 10.1039/d1sm01400e
• Zhu, Ronghui; del Rio-Salgado, Jesus M.; et el. (2022) Synthetic multistability in mammalian cells; Science; Vol. 375; No. 6578; Art. No. eabg9765; 10.1126/science.abg9765
• McCord, Rachel Patton; Taipale, Mikko; et el. (2022) Voices on technology: The molecular biologists’ ever-expanding toy box; Molecular Cell; Vol. 82; No. 2; 221-226; 10.1016/j.molcel.2021.12.025
• Feinsinger, Ashley; Pouratian, Nader; et el. (2022) Ethical commitments, principles, and practices guiding intracranial neuroscientific research in humans; Neuron; Vol. 110; No. 2; 188-194; PMCID PMC9417025; 10.1016/j.neuron.2021.11.011
• Liu, Zhen; Qin, Zi-Yang; et el. (2022) An Enzymatic Platform for Primary Amination of 1-Aryl-2-alkyl Alkynes; Journal of the American Chemical Society; Vol. 144; No. 1; 80-85; PMCID PMC8765727; 10.1021/jacs.1c11340
• Vanshylla, Kanika; Fan, Chengcheng; et el. (2022) Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers; Cell Host and Microbe; Vol. 30; No. 1; 69-82; PMCID PMC8683262; 10.1016/j.chom.2021.12.010
• Depelteau, Jamie S.; Renault, Ludovic; et el. (2022) UVC inactivation of pathogenic samples suitable for cryo-EM analysis; Communications Biology; Vol. 5; Art. No. 29; 10.1038/s42003-021-02962-w
• Parker, Joe (2022) Joe Parker [Q&A with Joe Parker]; Current Biology; Vol. 32; No. 1; R6-R8; 10.1016/j.cub.2021.11.057
• Lu, Jenny; Behbahani, Amir H.; et el. (2022) Transforming representations of movement from body- to world-centric space; Nature; Vol. 601; No. 7891; 98-104; 10.1038/s41586-021-04191-x
• Ogega, Clinton O.; Skinner, Nicole E.; et el. (2022) B cell overexpression of FCRL5 and PD-1 is associated with low antibody titers in HCV infection; PLOS Pathogens; Vol. 18; No. 1; Art. No. e1010179; PMCID PMC8769295; 10.1371/journal.ppat.1010179
• Chadwick, Grayson L.; Skennerton, Connor T.; et el. (2022) Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea; PLoS Biology; Vol. 20; No. 1; Art. No. e3001508; PMCID PMC9012536; 10.1371/journal.pbio.3001508
• Nichols, Aaron L.; Blumenfeld, Zack; et el. (2022) Fluorescence activation mechanism and imaging of drug permeation with new sensors for smoking-cessation ligands; eLife; Vol. 11; Art. No. e74648; PMCID PMC8820738; 10.7554/eLife.74648
• Stuckey, K.; Dua, R.; et el. (2022) Optimal dynamic incentive scheduling for Hawk-Dove evolutionary games; Physical Review E; Vol. 105; No. 1; Art. No. 014412; 10.1103/PhysRevE.105.014412
• Miller, David C.; Athavale, Soumitra V.; et el. (2022) Combining chemistry and protein engineering for new-to-nature biocatalysis; Nature Synthesis; Vol. 1; No. 1; 18-23; PMCID PMC8995090; 10.1038/s44160-021-00008-x
• Arrastia, Mary V.; Jachowicz, Joanna W.; et el. (2022) Single-cell measurement of higher-order 3D genome organization with scSPRITE; Nature Biotechnology; Vol. 40; No. 1; 64-73; 10.1038/s41587-021-00998-1
• Chai, Cynthia M.; Chen, Wen; et el. (2022) A conserved behavioral role for a nematode interneuron neuropeptide receptor; Genetics; Vol. 220; No. 1; Art. No. iyab198; PMCID PMC8733633; 10.1093/genetics/iyab198
• Cao, Mengyi; Schwartz, Hillel T.; et el. (2022) The entomopathogenic nematode Steinernema hermaphroditum is a self-fertilizing hermaphrodite and a genetically tractable system for the study of parasitic and mutualistic symbiosis; Genetics; Vol. 220; No. 1; Art. No. iyab170; PMCID PMC8733455; 10.1093/genetics/iyab170
• Lohoff, T.; Ghazanfar, S.; et el. (2022) Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis; Nature Biotechnology; Vol. 40; No. 1; 74-85; 10.1038/s41587-021-01006-2
• Yu, Hang; Skennerton, Connor T.; et el. (2022) Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea; ISME Journal; Vol. 16; No. 1; 168-177; 10.1038/s41396-021-01047-0
• Andersen, Richard A.; Aflalo, Tyson; et el. (2022) Exploring Cognition with Brain–Machine Interfaces; Annual Review of Psychology; Vol. 73; 131-158; 10.1146/annurev-psych-030221-030214
• Quinodoz, Sofia A.; Bhat, Prashant; et el. (2022) SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding; Nature Protocols; Vol. 17; No. 1; 36-75; 10.1038/s41596-021-00633-y
• Goertsen, David; Flytzanis, Nicholas C.; et el. (2021) AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset; Nature Neuroscience; Vol. 25; No. 1; 106-115; 10.1038/s41593-021-00969-4
• Brückner, Adrian; Badroos, Jean M.; et el. (2021) Evolutionary assembly of cooperating cell types in an animal chemical defense system; Cell; Vol. 184; No. 25; 6138-6156; 10.1016/j.cell.2021.11.014
• Markaki, Yolanda; Chong, Johnny Gan; et el. (2021) Xist nucleates local protein gradients to propagate silencing across the X chromosome; Cell; Vol. 184; No. 25; 6174-6192; PMCID PMC8671326; 10.1016/j.cell.2021.10.022
• Oberhofer, Georg; Ivy, Tobin; et el. (2021) Gene drive that results in addiction to a temperature-sensitive version of an essential gene triggers population collapse in Drosophila; Proceedings of the National Academy of Sciences; Vol. 118; No. 49; Art. No. e2107413118; PMCID PMC8670509; 10.1073/pnas.2107413118
• Abrams, Michael J.; Tan, Fayth Hui; et el. (2021) A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice; eLife; Vol. 10; e65092; PMCID PMC8782573; 10.7554/eLife.65092
• Sun, Haitao; Lu, Zhaoning; et el. (2021) Error-prone, stress-induced 3′ flap–based Okazaki fragment maturation supports cell survival; Science; Vol. 374; No. 6572; 1252-1258; PMCID PMC8852821; 10.1126/science.abj1013
• Arechavala, Rebecca Johnson; Rochart, Roger; et el. (2021) Task switching reveals abnormal brain-heart electrophysiological signatures in cognitively healthy individuals with abnormal CSF amyloid/tau, a pilot study; International Journal of Psychophysiology; Vol. 170; 102-111; PMCID PMC8865562; 10.1016/j.ijpsycho.2021.10.007
• Cabeen, Ryan P.; Toga, Arthur W.; et el. (2021) Frontoinsular cortical microstructure is linked to life satisfaction in young adulthood; Brain Imaging and Behavior; Vol. 15; No. 6; 2775-2789; 10.1007/s11682-021-00467-y
• Keleş, Ümit; Lin, Chujun; et el. (2021) A Cautionary Note on Predicting Social Judgments from Faces with Deep Neural Networks; Affective Science; Vol. 2; No. 4; 438-454; 10.1007/s42761-021-00075-5
• Liu, Zhen; Calvó-Tusell, Carla; et el. (2021) Dual-function enzyme catalysis for enantioselective carbon–nitrogen bond formation; Nature Chemistry; Vol. 13; No. 12; 1166-1172; 10.1038/s41557-021-00794-z
• Cable, Jennifer; Elowitz, Michael B.; et el. (2021) Single cell biology—a Keystone Symposia report; Annals of the New York Academy of Sciences; Vol. 1506; 74-97; 10.1111/nyas.14692
• Barnes, Christopher; Scheid, Johannes F.; et el. (2021) Structural insights into antibody-mediated neutralization of SARS-CoV-2; Glycobiology; Vol. 31; No. 12; 1696-1697; 10.1093/glycob/cwab121
• Wu, Daw-An; Adams, Sara W.; et el. (2021) Preliminary analysis of qEEG during a subliminally‐primed task‐switching test in pre‐symptomatic Alzheimer’s disease; Alzheimer’s & Dementia; Vol. 17; No. S5; Art. No. e057869; 10.1002/alz.057869
• Solovieva, Tatiana and Bronner, Marianne (2021) Reprint of: Schwann cell precursors: Where they come from and where they go; Cells & Development; Vol. 168; Art. No. 203729; 10.1016/j.cdev.2021.203729
• Wu, Zachary; Johnston, Kadina E.; et el. (2021) Protein sequence design with deep generative models; Current Opinion in Chemical Biology; Vol. 65; 18-27; 10.1016/j.cbpa.2021.04.004
• Segalin, Cristina; Williams, Jalani; et el. (2021) The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice; eLife; Vol. 10; Art. No. e63720; PMCID PMC8631946; 10.7554/eLife.63720
• Chari, Tara; Weissbourd, Brandon; et el. (2021) Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types; Science Advances; Vol. 7; No. 48; Art. No. eabh1683; PMCID PMC8626072; 10.1126/sciadv.abh1683
• Sonn, Seong Keun; Seo, Seungwoon; et el. (2021) ER-associated CTRP1 regulates mitochondrial fission via interaction with DRP1; Experimental and Molecular Medicine; Vol. 53; 1769-1780; PMCID PMC8639813; 10.1038/s12276-021-00701-z
• Escolano, Amelia; Gristick, Harry B.; et el. (2021) Sequential immunization of macaques elicits heterologous neutralizing antibodies targeting the V3-glycan patch of HIV-1 Env; Science Translational Medicine; Vol. 13; No. 621; Art. No. abk1533; PMCID PMC8932345; 10.1126/scitranslmed.abk1533
• Weissbourd, Brandon; Momose, Tsuyoshi; et el. (2021) A genetically tractable jellyfish model for systems and evolutionary neuroscience; Cell; Vol. 184; No. 24; 5854-5868; PMCID PMC8629132; 10.1016/j.cell.2021.10.021
• Rodriguez, Kellen R.; Sarraf, Namita; et el. (2021) A Loser-Take-All DNA Circuit; ACS Synthetic Biology; Vol. 10; No. 11; 2878-2885; PMCID PMC9286317; 10.1021/acssynbio.1c00318
• Rahman, Atif and Pachter, Lior (2021) SWALO: scaffolding with assembly likelihood optimization; Nucleic Acids Research; Vol. 49; No. 20; Art. No. e117; 10.1093/nar/gkab717
• Yang, Zhe; Wang, Tongtong; et el. (2021) Predicting changes in osmolality; eLife; Vol. 10; Art. No. e74551; PMCID PMC8601660; 10.7554/elife.74551
• Wittmann, Bruce J.; Yue, Yisong; et el. (2021) Informed training set design enables efficient machine learning-assisted directed protein evolution; Cell Systems; Vol. 12; No. 11; 1026-1045; 10.1016/j.cels.2021.07.008
• Brune, Karl D.; Liekniņa, Ilva; et el. (2021) N-Terminal Modification of Gly-His-Tagged Proteins with Azidogluconolactone; ChemBioChem; Vol. 22; No. 22; 3199-3207; 10.1002/cbic.202100381
• Athavale, Soumitra V.; Gao, Shilong; et el. (2021) Biocatalytic, Intermolecular C−H Bond Functionalization for the Synthesis of Enantioenriched Amides; Angewandte Chemie International Edition; Vol. 60; No. 47; 24864-24869; PMCID PMC8578410; 10.1002/anie.202110873
• Schwarzkopf, Maayan; Liu, Mike C.; et el. (2021) Hybridization chain reaction enables a unified approach to multiplexed, quantitative, high-resolution immunohistochemistry and in situ hybridization; Development; Vol. 148; No. 22; Art. No. dev199847; PMCID PMC8645210; 10.1242/dev.199847
• Lloyd, M. K.; Trembath-Reichert, E.; et el. (2021) Methoxyl stable isotopic constraints on the origins and limits of coal-bed methane; Science; Vol. 374; No. 6569; 894-897; 10.1126/science.abg0241
• Quinodoz, Sofia A.; Jachowicz, Joanna W.; et el. (2021) RNA promotes the formation of spatial compartments in the nucleus; Cell; Vol. 184; No. 23; 5775-5790; PMCID PMC9115877; 10.1016/j.cell.2021.10.014
• Higgins, Irina; Chang, Le; et el. (2021) Unsupervised deep learning identifies semantic disentanglement in single inferotemporal face patch neurons; Nature Communications; Vol. 12; Art. No. 6456; 10.1038/s41467-021-26751-5
• Barlow, Jacob T.; Leite, Gabriela; et el. (2021) Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome; Microbiome; Vol. 9; Art. No. 214; PMCID PMC8561862; 10.1186/s40168-021-01162-2
• Parker, Hugo J.; De Kumar, Bony; et el. (2021) Analysis of lamprey meis genes reveals that conserved inputs from Hox, Meis and Pbx proteins control their expression in the hindbrain and neural tube; Developmental Biology; Vol. 479; 61-76; 10.1016/j.ydbio.2021.07.014
• Chongtham, Anjalika; Isas, J. Mario; et el. (2021) Amplification of neurotoxic HTTex1 assemblies in human neurons; Neurobiology of Disease; Vol. 159; Art. No. 105517; PMCID PMC8943833; 10.1016/j.nbd.2021.105517
• Phan, Quynh T.; Lin, Jianfeng; et el. (2021) The Globular C1q Receptor Is Required for Epidermal Growth Factor Receptor Signaling during Candida albicans Infection; mBio; Vol. 12; No. 6; Art. No. e02716-21; PMCID PMC8561387; 10.1128/mBio.02716-21
• Ji, Jenny; Winnett, Alexander; et el. (2021) Modulating Factors of Household Transmission of SARS‑CoV‑2 in a Community-Based Study; American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5; 313; 10.4269/ajtmh.abstract2021
• Hueschen, Christina; Segev Zarko, Li-Av; et el. (2021) Actin Organization and Dynamics in Motile Toxoplasma Gondii Parasites; American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5; 448-449; 10.4269/ajtmh.abstract2021
• Gandhi, Shashank and Bronner, Marianne E. (2021) Seq Your Destiny: Neural Crest Fate Determination in the Genomic Era; Annual Review of Genetics; Vol. 55; 349-376; 10.1146/annurev-genet-071719-020954
• Cheng, Kai-Wen; Li, Shan; et el. (2021) Impacts of p97 on Proteome Changes in Human Cells during Coronaviral Replication; Cells; Vol. 10; No. 11; Art. No. 2953; PMCID PMC8616207; 10.3390/cells10112953
• Woodward, Denise; Ricks, Ernest, Jr.; et el. (2021) The Path of Science in Future Tibetan Buddhist Education; Frontiers in Communication; Vol. 6; Art. No. 731604; 10.3389/fcomm.2021.731604
• Chen, Shun-Jia; Kim, Leehyeon; et el. (2021) Aminopeptidases trim Xaa-Pro proteins, initiating their degradation by the Pro/N-degron pathway; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 43; Art. No. e2115430118; PMCID PMC8639330; 10.1073/pnas.2115430118
• Behbahani, Amir H.; Palmer, Emily H.; et el. (2021) Drosophila re-zero their path integrator at the center of a fictive food patch; Current Biology; Vol. 31; No. 20; 4534-4546; PMCID PMC8551043; 10.1016/j.cub.2021.08.006
• Abernathy, Morgan E.; Gristick, Harry B.; et el. (2021) Antibody elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion peptide and destroys a neutralizing epitope; npj Vaccines; Vol. 6; Art. No. 126; PMCID PMC8545924; 10.1038/s41541-021-00387-4
• Brown, David; Altermatt, Michael; et el. (2021) Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing; Frontiers in Immunology; Vol. 12; Art. No. 730825; PMCID PMC8574206; 10.3389/fimmu.2021.730825
• Abernathy, Morgan E.; Dam, Kim-Marie A.; et el. (2021) How Antibodies Recognize Pathogenic Viruses: Structural Correlates of Antibody Neutralization of HIV-1, SARS-CoV-2, and Zika; Viruses; Vol. 13; No. 10; Art. No. 2106; PMCID PMC8537525; 10.3390/v13102106
• Rawlings, Thomas M.; Makwana, Komal; et el. (2021) Modelling the impact of decidual senescence on embryo implantation in human endometrial assembloids; eLife; Vol. 10; Art. No. e69603; PMCID PMC8523170; 10.7554/elife.69603
• Stangherlin, Alessandra; Watson, Joseph L.; et el. (2021) Compensatory ion transport buffers daily protein rhythms to regulate osmotic balance and cellular physiology; Nature Communications; Vol. 12; Art. No. 6035; PMCID PMC8520019; 10.1038/s41467-021-25942-4
• Phillips, Daniel A.; Zacharoff, Lori A.; et el. (2021) A bacterial membrane sculpting protein with BAR domain-like activity; eLife; Vol. 10; Art. No. e60049; PMCID PMC8687657; 10.7554/elife.60049
• Parker, Joseph and Kronauer, Daniel J. C. (2021) How ants shape biodiversity; Current Biology; Vol. 31; No. 19; R1208-R1214; 10.1016/j.cub.2021.08.015
• Booeshaghi, A. Sina; Yao, Zizhen; et el. (2021) Isoform cell-type specificity in the mouse primary motor cortex; Nature; Vol. 598; No. 7879; 195-199; PMCID PMC8494650; 10.1038/s41586-021-03969-3
• Rebboah, Elisabeth; Reese, Fairlie; et el. (2021) Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq; Genome Biology; Vol. 22; Art. No. 286; PMCID PMC8495978; 10.1186/s13059-021-02505-w
• Yao, Zizhen; Liu, Hanqing; et el. (2021) A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex; Nature; Vol. 598; No. 7879; 103-110; PMCID PMC8494649; 10.1038/s41586-021-03500-8
• Adkins, Ricky S.; Aldridge, Andrew I.; et el. (2021) A multimodal cell census and atlas of the mammalian primary motor cortex; Nature; Vol. 598; No. 7879; 86-102; 10.1038/s41586-021-03950-0
• Chen, Peiwei and Aravin, Alexei A. (2021) Transposon-taming piRNAs in the germline: Where do they come from?; Molecular Cell; Vol. 81; No. 19; 3884-3885; 10.1016/j.molcel.2021.09.017
• Rothenberg, Ellen V. (2021) Logic and lineage impacts on functional transcription factor deployment for T-cell fate commitment; Biophysical Journal; Vol. 120; No. 19; 4162-4181; 10.1016/j.bpj.2021.04.002
• Tran, Ngoc-Han; Carter, Stephen D.; et el. (2021) The stress-sensing domain of activated IRE1α forms helical filaments in narrow ER membrane tubes; Science; Vol. 374; No. 6563; 52-57; 10.1126/science.abh2474
• Osorio‐Rodriguez, Daniela; Razo-Mejia, Manuel; et el. (2021) Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper ocean; Limnology and Oceanography; Vol. 66; No. 10; 3607-3618; 10.1002/lno.11901
• Zhang, Bai-Hua; Zhou, Yuanping; et el. (2021) T cell immunity independent HBV clearance and validation of a new HBV cure strategy in HBV infected uPA/SCID chimeric mice; Hepatology; Vol. 74; No. S1; 64A; 10.1002/hep.32187
• Davidson, Cristin D.; Gibson, Alana L.; et el. (2021) Improved systemic AAV gene therapy with a neurotrophic capsid in Niemann–Pick disease type C1 mice; Life Science Alliance; Vol. 4; No. 10; Art. No. e202101040; PMCID PMC8380657; 10.26508/lsa.202101040
• Bhat, Prashant; Honson, Drew; et el. (2021) Nuclear compartmentalization as a mechanism of quantitative control of gene expression; Nature Reviews. Molecular Cell Biology; Vol. 22; No. 10; 653-670; 10.1038/s41580-021-00387-1
• Booeshaghi, A. Sina; Kil, Yeokyoung; et el. (2021) Low-cost, scalable, and automated fluid sampling for fluidics applications; HardwareX; Vol. 10; Art. No. e00201; 10.1016/j.ohx.2021.e00201
• Martik, Megan L. and Bronner, Marianne E. (2021) Riding the crest to get a head: neural crest evolution in vertebrates; Nature Reviews. Neuroscience; Vol. 22; No. 10; 616-626; 10.1038/s41583-021-00503-2
• Breunig, Stephanie; Chapman, Alex; et el. (2021) Modification of Insulin Lispro by Incorporation of Non-canonical Proline Residues; Protein Science; Vol. 30; No. S1; 89; 10.1002/pro.4191
• Takei, Yodai; Zheng, Shiwei; et el. (2021) Single-cell nuclear architecture across cell types in the mouse brain; Science; Vol. 374; No. 6567; 586-594; 10.1126/science.abj1966
• Taylor, Dallas N.; Davidson, Samuel R.; et el. (2021) A Cooperative DNA Catalyst; Journal of the American Chemical Society; Vol. 143; No. 38; 15567-15571; PMCID PMC8609974; 10.1021/jacs.1c07122
• Jette, Claudia A.; Cohen, Alexander A.; et el. (2021) Broad cross-reactivity across sarbecoviruses exhibited by a subset of COVID-19 donor-derived neutralizing antibodies; Cell Reports; Vol. 36; No. 13; Art. No. 109760; PMCID PMC8423902; 10.1016/j.celrep.2021.109760
• Kahan, Anat; Greenbaum, Alon; et el. (2021) Light-guided sectioning for precise in situ localization and tissue interface analysis for brain-implanted optical fibers and GRIN lenses; Cell Reports; Vol. 36; No. 13; Art. No. 109744; PMCID PMC8552649; 10.1016/j.celrep.2021.109744
• Zhu, Meng; Shahbazi, Marta; et el. (2021) Human embryo polarization requires PLC signaling to mediate trophectoderm specification; eLife; Vol. 10; Art. No. e65068; 10.7554/eLife.65068
• Belliveau, Nathan M.; Chure, Griffin; et el. (2021) Fundamental limits on the rate of bacterial growth and their influence on proteomic composition; Cell Systems; Vol. 12; No. 9; 924-944; PMCID PMC8460600; 10.1016/j.cels.2021.06.002
• Sozen, Berna; Jorgensen, Victoria; et el. (2021) Reconstructing aspects of human embryogenesis with pluripotent stem cells; Nature Communications; Vol. 12; Art. No. 5550; PMCID PMC8455697; 10.1038/s41467-021-25853-4
• Watkins-Dulaney, Ella J.; Dunham, Noah P.; et el. (2021) Asymmetric Alkylation of Ketones Catalyzed by Engineered TrpB; Angewandte Chemie International Edition; Vol. 60; No. 39; 21412-21417; PMCID PMC8440449; 10.1002/anie.202106938
• Wrobel, Chester J. J.; Yu, Jingfang; et el. (2021) Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival; Journal of the American Chemical Society; Vol. 143; No. 36; 14676-14683; PMCID PMC8594405; 10.1021/jacs.1c05908
• Ullah, Irfan; Prévost, Jérémie; et el. (2021) Live imaging of SARS-CoV-2 infection in mice reveals that neutralizing antibodies require Fc function for optimal efficacy; Immunity; Vol. 54; No. 9; 2143-2158; PMCID PMC8372518; 10.1016/j.immuni.2021.08.015
• Olson, Christine A.; Iñiguez, Alonso J.; et el. (2021) Alterations in the gut microbiota contribute to cognitive impairment induced by the ketogenic diet and hypoxia; Cell Host and Microbe; Vol. 29; No. 9; 1378-1392; PMCID PMC8429275; 10.1016/j.chom.2021.07.004
• Buarque de Macedo, Robert; Andò, Edward; et el. (2021) Unearthing real-time 3D ant tunneling mechanics; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 36; Art. No. e2102267118; PMCID PMC8433525; 10.1073/pnas.2102267118
• Zhang, Xiaoyi; Gui, Lin; et el. (2021) Conserved L464 in p97 D1–D2 linker is critical for p97 cofactor regulated ATPase activity; Biochemical Journal; Vol. 478; No. 17; 3185-3204; PMCID PMC9041309; 10.1042/bcj20210288
• Chen, Peiwei; Luo, Yicheng; et el. (2021) RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility; PLoS Genetics; Vol. 17; No. 9; Art. No. e1009591; PMCID PMC8412364; 10.1371/journal.pgen.1009591
• Lee, Kyu Hyun; Ni, Yu-Li; et el. (2021) Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes; Nature Communications; Vol. 12; Art. No. 5245; 10.1038/s41467-021-25443-4
• Ákos, Zsuzsa; Dunipace, Leslie; et el. (2021) NaNuTrap: a technique for in vivo cell nucleus labelling using nanobodies; Development; Vol. 148; No. 18; Art. No. dev199822; 10.1242/dev.199822
• Kaplan, Mohammed; Chreifi, Georges; et el. (2021) In situ imaging of bacterial outer membrane projections and associated protein complexes using electron cryo-tomography; eLife; Vol. 10; Art. No. e73099; 10.7554/eLife.73099
• Yeung, Enoch; Kim, Jongmin; et el. (2021) Data-driven network models for genetic circuits from time-series data with incomplete measurements; Journal of the Royal Society Interface; Vol. 18; No. 182; Art. No. 20210413; 10.1098/rsif.2021.0413
• Shehata, Mohammad; Cheng, Miao; et el. (2021) Team Flow Is a Unique Brain State Associated with Enhanced Information Integration and Interbrain Synchrony; eNeuro; Vol. 8; No. 5; ENEURO.0133-21.2021; PMCID PMC8513532; 10.1523/eneuro.0133-21.2021
• Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2021) Protein profiling in the habenula after chronic (–)-menthol exposure in mice; Journal of Neurochemistry; Vol. 158; No. 6; 1345-1358; PMCID PMC8577691; 10.1111/jnc.15495
• O’Toole, George A.; Crabbé, Aurélie; et el. (2021) Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions; mBio; Vol. 12; No. 5; Art. No. mBio.01763-21; PMCID PMC8546538; 10.1128/mbio.01763-21
• Oikonomou, Catherine M. and Jensen, Grant J. (2021) The Atlas of Bacterial & Archaeal Cell Structure: an Interactive Open-Access Microbiology Textbook; Journal of Microbiology & Biology Education; Vol. 22; No. 2; Art. No. e00128-21; PMCID PMC8442016; 10.1128/jmbe.00128-21
• Piacentino, Michael L.; Hutchins, Erica J.; et el. (2021) Essential function and targets of BMP signaling during midbrain neural crest delamination; Developmental Biology; Vol. 477; 251-261; 10.1016/j.ydbio.2021.06.003
• McManus, John B.; Bernhards, Casey B.; et el. (2021) Rapid Characterization of Genetic Parts with Cell-free Systems; Journal of Visualized Experiments; Vol. 174; Art. No. e62816; 10.3791/62816
• Qu, Zijie; Schildknecht, Dominik; et el. (2021) Persistent fluid flows defined by active matter boundaries; Communications Physics; Vol. 4; Art. No. 198; 10.1038/s42005-021-00703-3
• Lin, Chujun; Keleş, Ümit; et el. (2021) Four dimensions characterize attributions from faces using a representative set of English trait words; Nature Communications; Vol. 12; Art. No. 5168; 10.1038/s41467-021-25500-y
• Desai, Ravi V.; Chen, Xinyue; et el. (2021) A DNA repair pathway can regulate transcriptional noise to promote cell fate transitions; Science; Vol. 373; No. 6557; Art. No. eabc6506; PMCID PMC8667278; 10.1126/science.abc6506
• Gong, Wuming; Granados, Alejandro A.; et el. (2021) Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees; Cell Systems; Vol. 12; No. 8; 810-826; 10.1016/j.cels.2021.05.008
• Mackinlay, Kirsty M. L.; Weatherbee, Bailey A. T.; et el. (2021) An in vitro stem cell model of human epiblast and yolk sac interaction; eLife; Vol. 10; Art. No. e63930; PMCID PMC8370770; 10.7554/elife.63930
• Dar, Daniel; Dar, Nina; et el. (2021) Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution; Science; Vol. 373; No. 6556; Art. No. eabi4882; PMCID PMC8454218; 10.1126/science.abi4882
• Muecksch, Frauke; Weisblum, Yiska; et el. (2021) Affinity maturation of SARS-CoV-2 neutralizing antibodies confers potency, breadth, and resilience to viral escape mutations; Immunity; Vol. 54; No. 8; 1853-1868; PMCID PMC8323339; 10.1016/j.immuni.2021.07.008
• West, Anthony P., Jr.; Wertheim, Joel O.; et el. (2021) Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York; Nature Communications; Vol. 12; Art. No. 4886; PMCID PMC8352861; 10.1038/s41467-021-25168-4
• Dillman, Adler R; Korff, Wyatt; et el. (2021) Steinernema carpocapsae jumps with greater velocity and acceleration than previously reported; microPublication Biology; Art. No. 000435; PMCID PMC8329732; 10.17912/micropub.biology.000435
• Hosokawa, Hiroyuki; Koizumi, Maria; et el. (2021) Stage-specific action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse pro-T cells; Journal of Experimental Medicine; Vol. 218; No. 8; Art. No. e20202648; PMCID PMC8241539; 10.1084/jem.20202648
• Hensley, Matthew K.; Bain, William G.; et el. (2021) Intractable Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case Study; Clinical Infectious Diseases; Vol. 73; No. 3; e815-e821; PMCID PMC7929077; 10.1093/cid/ciab072
• Booeshaghi, A. Sina and Pachter, Lior (2021) Normalization of single-cell RNA-seq counts by log(x+1)* or log(1+x)*; Bioinformatics; Vol. 37; No. 15; 2223-2224; PMCID PMC7989636; 10.1093/bioinformatics/btab085
• Wittmann, Bruce J.; Johnston, Kadina E; et el. (2021) Advances in machine learning for directed evolution; Current Opinion in Structural Biology; Vol. 69; 11-18; 10.1016/j.sbi.2021.01.008
• Jiménez Otero, Fernanda; Chadwick, Grayson L.; et el. (2021) Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters; Applied and Environmental Microbiology; Vol. 87; No. 17; Art. No. AEM.00706-21; PMCID PMC8357294; 10.1128/aem.00706-21
• Varuzhanyan, Grigor; Ladinsky, Mark S.; et el. (2021) Fis1 ablation in the male germline disrupts mitochondrial morphology and mitophagy, and arrests spermatid maturation; Development; Vol. 148; No. 16; Art. No. dev199686; PMCID PMC8380467; 10.1242/dev.199686
• Bjorkman, Pamela (2021) Neutralizing antibodies against coronaviruses; Microscopy and Microanalysis; Vol. 27; No. S1; 1112-1113; 10.1017/s1431927621004177
• Wimsatt, Gregory; Saira, Olli-Pentti; et el. (2021) Harnessing fluctuations in thermodynamic computing via time-reversal symmetries; Physical Review Research; Vol. 3; No. 3; Art. No. 033115; 10.1103/physrevresearch.3.033115
• Szymanski, Linda J.; Kellis, Spencer; et el. (2021) Neuropathological effects of chronically implanted, intracortical microelectrodes in a tetraplegic patient; Journal of Neural Engineering; Vol. 18; No. 4; Art. No. 0460b9; 10.1088/1741-2552/ac127e
• Kishi, Yuriko and Parker, Joseph (2021) Cell type innovation at the tips of the animal tree; Current Opinion in Genetics and Development; Vol. 69; 112-121; 10.1016/j.gde.2021.01.009
• Schildknecht, Dominik and Thomson, Matt (2021) Phenomenological model of motility by spatiotemporal modulation of active interactions; New Journal of Physics; Vol. 23; No. 8; Art. No. 083001; 10.1088/1367-2630/ac1144
• Garber, Arkadiy I.; Kupper, Maria; et el. (2021) The Evolution of Interdependence in a Four-Way Mealybug Symbiosis; Genome Biology and Evolution; Vol. 13; No. 8; Art. No. evab123; PMCID PMC8331144; 10.1093/gbe/evab123
• Michels, Dana E.; Lomenick, Brett; et el. (2021) Amino Acid Analog Induces Stress Response in Marine Synechococcus; Applied and Environmental Microbiology; Vol. 87; No. 15; Art. No. e00200-21; 10.1128/aem.00200-21
• Nandi, Purbasha; Li, Shan; et el. (2021) Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes; International Journal of Molecular Sciences; Vol. 22; No. 15; Art. No. 8079; PMCID PMC8347982; 10.3390/ijms22158079
• Li, Yan; Chen, Pei-Ju; et el. (2021) Neural mechanism of spatio-chromatic opponency in the Drosophila amacrine neurons; Current Biology; Vol. 31; No. 14; 3040-3052; 10.1016/j.cub.2021.04.068
• Kliemann, Dorit; Adolphs, Ralph; et el. (2021) Reorganization of the Social Brain in Individuals with Only One Intact Cerebral Hemisphere; Brain Sciences; Vol. 11; No. 8; Art. No. 965; PMCID PMC8392565; 10.3390/brainsci11080965
• Nagai, Jun; Bellafard, Arash; et el. (2021) Specific and behaviorally consequential astrocyte G_q GPCR signaling attenuation in vivo with iβARK; Neuron; Vol. 109; No. 14; 2256-2274; PMCID PMC8418870; 10.1016/j.neuron.2021.05.023
• Grant, Stephen N. and Lester, Henry A. (2021) Regulation of epithelial sodium channel activity by SARS-CoV-1 and SARS-CoV-2 proteins; Biophysical Journal; Vol. 120; No. 14; 2805-2813; PMCID PMC8238646; 10.1016/j.bpj.2021.06.005
• Wani, Abubakar; Zhu, Jiang; et el. (2021) Neuronal VCP loss of function recapitulates FTLD-TDP pathology; Cell Reports; Vol. 36; No. 3; Art. No. 109399; PMCID PMC8383344; 10.1016/j.celrep.2021.109399
• Wu, Wei-Li; Adame, Mark D.; et el. (2021) Microbiota regulate social behaviour via stress response neurons in the brain; Nature; Vol. 595; No. 7867; 409-414; PMCID PMC8346519; 10.1038/s41586-021-03669-y
• Klink, P. Christiaan; Aubry, Jean-François; et el. (2021) Combining brain perturbation and neuroimaging in non-human primates; NeuroImage; Vol. 235; Art. No. 118017; 10.1016/j.neuroimage.2021.118017
• Chang, Le; Egger, Bernhard; et el. (2021) Explaining face representation in the primate brain using different computational models; Current Biology; Vol. 31; No. 13; 2785-2795; PMCID PMC8566016; 10.1016/j.cub.2021.04.014
• Cohen, Sarah M.; Le, Henry H.; et el. (2021) A Mutation of lips-6 in C. elegans; microPublication Biology; Art. No. 000419; PMCID PMC8271349; 10.17912/micropub.biology.000419
• Greaney, Allison J.; Starr, Tyler N.; et el. (2021) Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies; Nature Communications; Vol. 12; Art. No. 4196; PMCID PMC8263750; 10.1038/s41467-021-24435-8
• Haugh, Kelsey A.; Ladinsky, Mark S.; et el. (2021) In vivo imaging of retrovirus infection reveals a role for Siglec-1/CD169 in multiple routes of transmission; eLife; Vol. 10; Art. No. e64179; PMCID PMC8298093; 10.7554/eLife.64179
• Zhang, Gang; Li, Shan; et el. (2021) AAA ATPases as therapeutic targets: Structure, functions, and small-molecule inhibitors; European Journal of Medicinal Chemistry; Vol. 219; Art. No. 113446; PMCID PMC8165034; 10.1016/j.ejmech.2021.113446
• Rosenberg, Matthew; Zhang, Tony; et el. (2021) Mice in a labyrinth show rapid learning, sudden insight, and efficient exploration; eLife; Vol. 10; Art. No. e66175; PMCID PMC8294850; 10.7554/eLife.66175
• Pleiner, Tino; Hazu, Masami; et el. (2021) WNK1 is an assembly factor for the human ER membrane protein complex; Molecular Cell; Vol. 81; No. 13; 2693-2704; PMCID PMC8254792; 10.1016/j.molcel.2021.04.013
• Huang, Xiawei; Hu, Hongmiao; et el. (2021) Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex; Nature Communications; Vol. 12; Art. No. 4061; 10.1038/s41467-021-24351-x
• Bloom, Joshua S.; Sathe, Laila; et el. (2021) Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples; Nature Biomedical Engineering; Vol. 5; No. 7; 657-665; PMCID PMC7480060; 10.1038/s41551-021-00754-5
• Arnold, Frances (2021) Innovation by evolution: bringing new chemistry to life; Acta Crystallographica Section A; Vol. A77; No. Supplement; Art. No. a70; 10.1107/S0108767321099293
• Melsted, Páll; Booeshaghi, A. Sina; et el. (2021) Modular, efficient and constant-memory single-cell RNA-seq preprocessing; Nature Biotechnology; Vol. 39; No. 7; 813-818; 10.1038/s41587-021-00870-2
• Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid Oxidation by Citrobacter portucalensis MBL; mBio; Vol. 12; No. 4; Art. No. e02265-21; 10.1128/mBio.02265-21
• Dukes, Daniel; Abrams, Kathryn; et el. (2021) The rise of affectivism; Nature Human Behaviour; Vol. 5; No. 7; 816-820; PMCID PMC8319089; 10.1038/s41562-021-01130-8
• Liu, Yang; Bernstein, Jeremy; et el. (2021) Learning by Turning: Neural Architecture Aware Optimisation; Proceedings of Machine Learning Research; Vol. 139; 6748-6758; 10.48550/arXiv.2102.07227
• Phillips, Alexandra A.; Speth, Daan R.; et el. (2021) Microbial succession and dynamics in meromictic Mono Lake, California; Geobiology; Vol. 19; No. 4; 376-393; 10.1111/gbi.12437
• Lisitskaya, L.; Esyunina, D.; et el. (2021) Analysis of a putative nuclease associated with the Argonaute protein from Rhodobacter sphaeroides; FEBS Open Bio; Vol. 11; No. S1; 238; 10.1002/2211-5463.13205
• Kaplan, Mohammed; Wang, Yuhang; et el. (2021) Programmed Flagellar Ejection in Caulobacter crescentus Leaves PL-subcomplexes; Journal of Molecular Biology; Vol. 433; No. 13; Art. No. 167004; PMCID PMC9843737; 10.1016/j.jmb.2021.167004
• Yang, Xiaohong; Yang, Xiaoxiao; et el. (2021) A GH89 human α-N-acetylglucosaminidase (hNAGLU) homologue from gut microbe Bacteroides thetaiotaomicron capable of hydrolyzing heparosan oligosaccharides; AMB Express; Vol. 11; Art. No. 94; PMCID PMC8225759; 10.1186/s13568-021-01253-1
• Sarai, Nicholas S.; Levin, Benjamin J.; et el. (2021) Biocatalytic Transformations of Silicon—the Other Group 14 Element; ACS Central Science; Vol. 7; No. 6; 944-953; PMCID PMC8227617; 10.1021/acscentsci.1c00182
• Sender, Ron; Bar-On, Yinon M.; et el. (2021) The total number and mass of SARS-CoV-2 virions; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 25; Art. No. e2024815118; PMCID PMC8237675; 10.1073/pnas.2024815118
• Marlow, Jeffrey J.; Hoer, Daniel; et el. (2021) Carbonate-hosted microbial communities are prolific and pervasive methane oxidizers at geologically diverse marine methane seep sites; Proceedings of the National Academy of Sciences; Vol. 118; No. 25; Art. No. e2006857118; PMCID PMC8237665; 10.1073/pnas.2006857118
• Molè, Matteo A.; Coorens, Tim H. H.; et el. (2021) A single cell characterisation of human embryogenesis identifies pluripotency transitions and putative anterior hypoblast centre; Nature Communications; Vol. 12; Art. No. 3679; 10.1038/s41467-021-23758-w
• Phillips, Rob (2021) Schrödinger’s What Is Life? at 75; Cell Systems; Vol. 12; No. 6; 465-476; 10.1016/j.cels.2021.05.013
• Hoffmann, Magnus A. G.; Kieffer, Collin; et el. (2021) In vitro characterization of engineered red blood cells as viral traps against HIV-1 and SARS-CoV-2; Molecular Therapy - Methods and Clinical Development; Vol. 21; 161-170; PMCID PMC7944778; 10.1016/j.omtm.2021.03.003
• Scheid, Johannes F.; Barnes, Christopher O.; et el. (2021) B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV; Cell; Vol. 184; No. 12; 3205-3221; PMCID PMC8064835; 10.1016/j.cell.2021.04.032
• Gustafsson, Johan; Robinson, Jonathan; et el. (2021) BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq; Genome Biology; Vol. 22; Art. No. 174; PMCID PMC8188791; 10.1186/s13059-021-02386-z
• Vulovic, Ivan; Yao, Qing; et el. (2021) Generation of ordered protein assemblies using rigid three-body fusion; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 23; Art. No. e2015037118; PMCID PMC8201882; 10.1073/pnas.2015037118
• Chen, Peiwei; Kotov, Alexei A.; et el. (2021) piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in D. melanogaster male germline; Genes and Development; Vol. 35; No. 11-12; 914-935; PMCID PMC8168559; 10.1101/gad.345041.120
• Sozen, Berna; Cornwall-Scoones, Jake; et el. (2021) The dynamics of morphogenesis in stem cell-based embryology: Novel insights for symmetry breaking; Developmental Biology; Vol. 474; 82-90; PMCID PMC8259461; 10.1016/j.ydbio.2020.12.005
• Solovieva, Tatiana and Bronner-Fraser, Marianne (2021) Schwann cell precursors: Where they come from and where they go; Cells & Development; Vol. 166; Art. No. 203686; PMCID PMC8496487; 10.1016/j.cdev.2021.203686
• Cheng, Kai-Wen; Wang, Feng; et el. (2021) Evaluation of artificial signal peptides for secretion of two lysosomal enzymes in CHO cells; Biochemical Journal; Vol. 478; No. 12; 2309-2319; PMCID PMC9074758; 10.1042/bcj20210015
• Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2021) Unifying synthetic embryology; Developmental Biology; Vol. 474; 1-4; PMCID PMC8257322; 10.1016/j.ydbio.2021.03.007
• Liu, Zhen and Arnold, Frances H. (2021) New-to-nature chemistry from old protein machinery: carbene and nitrene transferases; Current Opinion in Biotechnology; Vol. 69; 43-51; PMCID PMC8225731; 10.1016/j.copbio.2020.12.005
• Weatherbee, Bailey A. T.; Cui, Tongtong; et el. (2021) Modeling human embryo development with embryonic and extra-embryonic stem cells; Developmental Biology; Vol. 474; 91-99; PMCID PMC8232073; 10.1016/j.ydbio.2020.12.010
• Kaplan, Mohammed; Tocheva, Elitza I.; et el. (2021) Loss of the Bacterial Flagellar Motor Switch Complex upon Cell Lysis; mBio; Vol. 12; No. 3; Art. No. mBio.00298-21; PMCID PMC8263016; 10.1128/mBio.00298-21
• Chreifi, Georges; Chen, Songye; et el. (2021) Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition; Journal of Structural Biology; Vol. 213; No. 2; Art. No. 107716; PMCID PMC8217199; 10.1016/j.jsb.2021.107716
• Tookmanian, Elise M.; Belin, Brittany J.; et el. (2021) The role of hopanoids in fortifying rhizobia against a changing climate; Environmental Microbiology; Vol. 23; No. 6; 2906-2918; 10.1111/1462-2920.15594
• Livanos, Alexandra E.; Jha, Divya; et el. (2021) Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms; Gastroenterology; Vol. 160; No. 7; 2435-2450; PMCID PMC7931673; 10.1053/j.gastro.2021.02.056
• Jewett, Andrew I.; Stelter, David; et el. (2021) Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics; Journal of Molecular Biology; Vol. 433; No. 11; Art. No. 166841; 10.1016/j.jmb.2021.166841
• Smith, Sheena N.; Schubert, Rajib; et el. (2021) The SHREAD gene therapy platform for paracrine delivery improves tumor localization and intratumoral effects of a clinical antibody; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 21; Art. No. e2017925118; PMCID PMC8166199; 10.1073/pnas.2017925118
• Mackelprang, Rebecca; Aurand, Emily R.; et el. (2021) Guiding Ethical Principles in Engineering Biology Research; ACS Synthetic Biology; Vol. 10; No. 5; 907-910; 10.1021/acssynbio.1c00129
• Hochrein, Lisa M.; Li, Heyun; et el. (2021) High-Performance Allosteric Conditional Guide RNAs for Mammalian Cell-Selective Regulation of CRISPR/Cas; ACS Synthetic Biology; Vol. 10; No. 5; 964-971; 10.1021/acssynbio.1c00037
• De Gasparo, Raoul; Pedotti, Mattia; et el. (2021) Bispecific IgG neutralizes SARS-CoV-2 variants and prevents escape in mice; Nature; Vol. 593; No. 7859; 424-428; PMCID PMC8330819; 10.1038/s41586-021-03461-y
• Middelkoop, Teije C.; Garcia-Baucells, Júlia; et el. (2021) CYK-1/Formin activation in cortical RhoA signaling centers promotes organismal left–right symmetry breaking; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 20; Art. No. e2021814118; PMCID PMC8157923; 10.1073/pnas.2021814118
• Stevens, Leslie M.; Kim, Goheun; et el. (2021) Light-dependent N-end rule-mediated disruption of protein function in Saccharomyces cerevisiae and Drosophila melanogaster; PLOS Genetics; Vol. 17; No. 5; Art. No. e1009544; 10.1371/journal.pgen.1009544
• Smith, Edward J.; Farshim, Pamela P.; et el. (2021) Use of high-content imaging to quantify transduction of AAV-PHP viruses in the brain following systemic delivery; Brain Communications; Vol. 3; No. 2; Art. No. fcab105; PMCID PMC8200048; 10.1093/braincomms/fcab105
• Bloom, Jesse D.; Chan, Yujia Alina; et el. (2021) Investigate the origins of COVID-19; Science; Vol. 372; No. 6543; 694; PMCID PMC9520851; 10.1126/science.abj0016
• Garcia-Borràs, Marc; Kan, S. B. Jennifer; et el. (2021) Origin and Control of Chemoselectivity in Cytochrome c Catalyzed Carbene Transfer into Si–H and N–H bonds; Journal of the American Chemical Society; Vol. 143; No. 18; 7114-7123; PMCID PMC9292473; 10.1021/jacs.1c02146
• Cohen, Sarah M.; Sun, Jessica J.; et el. (2021) Transcriptional Response to a Dauer-Inducing Ascaroside Cocktail in Late L1 in C. elegans; microPublication Biology; Vol. 2021; Art. No. 000397; PMCID PMC8116936; 10.17912/micropub.biology.000397
• He, Xiaojia; Chadwick, Grayson L.; et el. (2021) Controls on Interspecies Electron Transport and Size Limitation of Anaerobically Methane-Oxidizing Microbial Consortia; mBio; Vol. 12; No. 3; Art. No. e03620-20; 10.1128/mBio.03620-20
• He, Xiaojia; Chadwick, Grayson; et el. (2021) Spatially Resolved Electron Transport through Anode‐Respiring Geobacter sulfurreducens Biofilms: Controls and Constraints; ChemElectroChem; Vol. 8; No. 10; 1747-1758; 10.1002/celc.202100111
• Orietti, Lorenzo C.; Rosa, Viviane Souza; et el. (2021) Embryo Size Regulates the Timing and Mechanism of Pluripotent Tissue Morphogenesis; Stem Cell Reports; Vol. 16; No. 5; 1182-1196; PMCID PMC8185375; 10.1016/j.stemcr.2020.09.004
• Guo, Jianying; Wang, Peizhe; et el. (2021) Machine learning-assisted high-content analysis of pluripotent stem cell-derived embryos in vitro; Stem Cell Reports; Vol. 16; No. 5; 1331-1346; PMCID PMC8185434; 10.1016/j.stemcr.2021.03.018
• Graybuck, Lucas T.; Daigle, Tanya L.; et el. (2021) Enhancer viruses for combinatorial cell-subclass-specific labeling; Neuron; Vol. 109; No. 9; 1449-1464; PMCID PMC8610077; 10.1016/j.neuron.2021.03.011
• Norman, Sumner L.; Maresca, David; et el. (2021) Single-trial decoding of movement intentions using functional ultrasound neuroimaging; Neuron; Vol. 109; No. 9; 1554-1566; PMCID PMC8105283; 10.1016/j.neuron.2021.03.003
• Agudelo, Marianna; Palus, Martin; et el. (2021) Broad and potent neutralizing human antibodies to tick-borne flaviviruses protect mice from disease; Journal of Experimental Medicine; Vol. 218; No. 5; Art. No. e20210236; PMCID PMC8040517; 10.1084/jem.20210236
• Varuzhanyan, Grigor; Chen, Hsiuchen; et el. (2021) Mitochondrial fission factor (Mff) is required for organization of the mitochondrial sheath in spermatids; Biochimica et Biophysica Acta - General Subjects; Vol. 1865; No. 5; Art. No. 129845; PMCID PMC7904653; 10.1016/j.bbagen.2021.129845
• Robertson, Wesley E.; Funke, Louise F. H.; et el. (2021) Creating custom synthetic genomes in Escherichia coli with REXER and GENESIS; Nature Protocols; Vol. 16; No. 5; 2345-2380; 10.1038/s41596-020-00464-3
• Peck, Ariana; Yao, Qing; et el. (2021) Challenges in solving structures from radiation-damaged tomograms of protein nanocrystals assessed by simulation; Acta Crystallographica Section D: Biological Crystallography; Vol. D77; No. 5; 572-586; PMCID PMC8098477; 10.1107/S2059798321002369
• Ashford, Oliver S.; Guan, Shuzhe; et el. (2021) A chemosynthetic ecotone—“chemotone”—in the sediments surrounding deep-sea methane seeps; Limnology and Oceanography; Vol. 66; No. 5; 1687-1702; 10.1002/lno.11713
• Dutka, Przemysław; Malounda, Dina; et el. (2021) Measuring gas vesicle dimensions by electron microscopy; Protein Science; Vol. 30; No. 5; 1081-1086; PMCID PMC8040859; 10.1002/pro.4056
• Kim, Jane H.; Spero, Melanie; et el. (2021) Chlorate And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And Lead To Healing Of Chronic Wounds; Wound Repair and Regeneration; Vol. 29; No. 3; A44-A45; 10.1111/wrr.12921
• Chen, Zibo and Elowitz, Michael B. (2021) Programmable protein circuit design; Cell; Vol. 184; No. 9; 2284-2301; PMCID PMC8087657; 10.1016/j.cell.2021.03.007
• Chen, Xinhong; Wolfe, Damien A.; et el. (2021) Endothelial-Tropic AAVs for Genetic Access to Whole-Brain Vasculature in Wild-Type Mouse Strains Following Non-Invasive Systemic Delivery; Molecular Therapy; Vol. 29; No. 4, S1; 25; 10.1016/j.ymthe.2021.04.019
• Leitch, Katherine J.; Ponce, Francesca V.; et el. (2021) The long-distance flight behavior of Drosophila supports an agent-based model for wind-assisted dispersal in insects; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 17; Art. No. e2013342118; PMCID PMC8092610; 10.1073/pnas.2013342118
• Jang, Min Jee; Coughlin, Gerard M.; et el. (2021) Deep Tropism Profiling of Barcoded AAV Capsid and Cargo Pools in Intact Tissue Using High-Throughput Ultrasensitive Sequential FISH; Molecular Therapy; Vol. 29; No. 4, S1; 142; 10.1016/j.ymthe.2021.04.019
• Hori, Acacia; Grebin, Anastasiya; et el. (2021) Targeted Gene Therapy with Engineered Systemic AAVs for the Central and Peripheral Nervous Systems Prevents Motor Coordination Phenotypes in a Mouse Model of Friedreich’s Ataxia; Molecular Therapy; Vol. 29; No. 4, S1; 125; 10.1016/j.ymthe.2021.04.019
• Borsos, Máté; Chen, Xinhong; et el. (2021) Simultaneous Detection of AAV Genome, Transcript, and Protein Localization in Intact Cells and Tissues at High Resolution; Molecular Therapy; Vol. 29; No. 4, S1; 142-143; 10.1016/j.ymthe.2021.04.019
• Helseth, Ashley R.; Hernandez-Martinez, Ricardo; et el. (2021) Cholinergic neurons constitutively engage the ISR for dopamine modulation and skill learning in mice; Science; Vol. 372; No. 6540; Art. No. eabe1931; PMCID PMC8457366; 10.1126/science.abe1931
• Wang, Zijun; Schmidt, Fabian; et el. (2021) mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants; Nature; Vol. 592; No. 7855; 616-622; PMCID PMC7836122; 10.1038/s41586-021-03324-6
• Kropocheva, Ekaterina; Kuzmenko, Anton; et el. (2021) A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis; Nucleic Acids Research; Vol. 49; No. 7; 4054-4065; PMCID PMC8053121; 10.1093/nar/gkab182
• Sidwell, Tom and Rothenberg, Ellen V. (2021) Epigenetic Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b; Frontiers in Immunology; Vol. 12; Art. No. 669498; PMCID PMC8079813; 10.3389/fimmu.2021.669498
• Chow, Ke-Huan K.; Budde, Mark W.; et el. (2021) Imaging cell lineage with a synthetic digital recording system; Science; Vol. 372; No. 6538; Art. No. eabb3099; 10.1126/science.abb3099
• Lattao, Ramona; Rangone, Hélène; et el. (2021) Mauve/LYST limits fusion of lysosome-related organelles and promotes centrosomal recruitment of microtubule nucleating proteins; Developmental Cell; Vol. 56; No. 7; 1000-1013; PMCID PMC8024676; 10.1016/j.devcel.2021.02.019
• Gandhi, Shashank; Li, Yuwei; et el. (2021) A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos; Development; Vol. 148; No. 7; Art. No. dev193565; PMCID PMC8077534; 10.1242/dev.193565
• Morais, Livia H.; Schreiber, Henry L., IV; et el. (2021) The gut microbiota–brain axis in behaviour and brain disorders; Nature Reviews Microbiology; Vol. 19; No. 4; 241-255; 10.1038/s41579-020-00460-0
• So, Juhoon; Kim, Minwook; et el. (2021) Attenuating the Epidermal Growth Factor Receptor–Extracellular Signal‐Regulated Kinase–Sex‐Determining Region Y‐Box 9 Axis Promotes Liver Progenitor Cell‐Mediated Liver Regeneration in Zebrafish; Hepatology; Vol. 73; No. 4; 1494-1508; PMCID PMC7769917; 10.1002/hep.31437
• Shi, Junchao; Zhang, Yunfang; et el. (2021) PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications; Nature Cell Biology; Vol. 23; No. 4; 424-436; 10.1038/s41556-021-00652-7
• Hlaváč, Peter; Parker, Joseph; et el. (2021) Diversification of myrmecophilous Clavigeritae beetles (Coleoptera: Staphylinidae: Pselaphinae) and their radiation in New Caledonia; Systematic Entomology; Vol. 46; No. 2; 422-452; 10.1111/syen.12469
• Sacher, Wesley D.; Chen, Fu-Der; et el. (2021) Implantable photonic neural probes for light-sheet fluorescence brain imaging; Neurophotonics; Vol. 8; No. 2; Art. No. 025003; PMCID PMC8059764; 10.1117/1.NPh.8.2.025003
• Arnaboldi, Valerio; Cho, Jaehyoung; et el. (2021) Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature; Database : The Journal of Biological Databases and Curation; Vol. 2021; Art. No. baab015; PMCID PMC8011436; 10.1093/database/baab015
• Mich, John K.; Graybuck, Lucas T.; et el. (2021) Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex; Cell Reports; Vol. 34; No. 13; Art. No. 108754; 10.1016/j.celrep.2021.108754
• Jette, Claudia A.; Barnes, Christopher O.; et el. (2021) Cryo-EM structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1 adopt a CD4-bound open conformation; Nature Communications; Vol. 12; Art. No. 1950; PMCID PMC8007822; 10.1038/s41467-021-21816-x
• Yang, Weibing; Cortijo, Sandra; et el. (2021) Molecular mechanism of cytokinin-activated cell division in Arabidopsis; Science; Vol. 371; No. 6536; 1350-1355; PMCID PMC8166333; 10.1126/science.abe2305
• Mageswaran, Shrawan Kumar; Yang, Wei Yuan; et el. (2021) A cryo–electron tomography workflow reveals protrusion-mediated shedding on injured plasma membrane; Science Advances; Vol. 7; No. 13; Art. No. eabc6345; PMCID PMC7997517; 10.1126/sciadv.abc6345
• Tang, Weiyi; Li, Yuwei; et el. (2021) Clonal analysis and dynamic imaging identify multipotency of individual Gallus gallus caudal hindbrain neural crest cells toward cardiac and enteric fates; Nature Communications; Vol. 12; Art. No. 1894; PMCID PMC7994390; 10.1038/s41467-021-22146-8
• Gaebler, Christian; Wang, Zijun; et el. (2021) Evolution of antibody immunity to SARS-CoV-2; Nature; Vol. 591; No. 7851; 639-644; PMCID PMC8221082; 10.1038/s41586-021-03207-w
• Cho, Jounhong Ryan; Chen, Xinhong; et el. (2021) Dorsal Raphe Dopamine Neurons Signal Motivational Salience Dependent on Internal State, Expectation, and Behavioral Context; Journal of Neuroscience; Vol. 41; No. 12; 2645-2655; PMCID PMC8018733; 10.1523/JNEUROSCI.2690-20.2021
• VanDrisse, Chelsey M.; Lipsh-Sokolik, Rosalie; et el. (2021) Computationally designed pyocyanin demethylase acts synergistically with tobramycin to kill recalcitrant Pseudomonas aeruginosa biofilms; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 12; Art. No. e2022012118; PMCID PMC8000102; 10.1073/pnas.2022012118
• Dunphy, William G. (2021) TopBP1 comes into focus; Molecular Cell; Vol. 81; No. 6; 1126-1127; 10.1016/j.molcel.2021.02.027
• Piddini, Eugenia; Shalek, Alex K.; et el. (2021) How are methodological developments enabling insights into cell behavior in cellular communities?; Cell Systems; Vol. 12; No. 3; 207-209; 10.1016/j.cels.2021.02.005
• Wang, Siwen; Yang, Shasha; et el. (2021) Removal of Antibiotic Resistant Bacteria and Genes by UV-Assisted Electrochemical Oxidation on Degenerative TiO₂ Nanotube Arrays; ACS ES&T Engineering; Vol. 1; No. 3; 612-622; 10.1021/acsestengg.1c00011
• Fatalska, Agnieszka; Stepinac, Emma; et el. (2021) The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication; eLife; Vol. 10; Art. No. e57241; PMCID PMC8009671; 10.7554/elife.57241
• Meirelles, Lucas A.; Perry, Elena K.; et el. (2021) Bacterial defenses against a natural antibiotic promote collateral resilience to clinical antibiotics; PLoS Biology; Vol. 19; No. 3; Art. No. e3001093; 10.1371/journal.pbio.3001093
• Bashford, Luke; Rosenthal, Isabelle; et el. (2021) The Neurophysiological Representation of Imagined Somatosensory Percepts in Human Cortex; Journal of Neuroscience; Vol. 41; No. 10; 2177-2185; PMCID PMC8018772; 10.1523/jneurosci.2460-20.2021
• Molè, Matteo Amitaba; Weberling, Antonia; et el. (2021) Integrin β1 coordinates survival and morphogenesis of the embryonic lineage upon implantation and pluripotency transition; Cell Reports; Vol. 34; No. 10; Art. No. 108834; PMCID PMC7966855; 10.1016/j.celrep.2021.108834
• Dries, Ruben; Zhu, Qian; et el. (2021) Giotto: a toolbox for integrative analysis and visualization of spatial expression data; Genome Biology; Vol. 22; Art. No. 78; 10.1186/s13059-021-02286-2
• Zhang, Gang; Li, Shan; et el. (2021) A covalent p97/VCP ATPase inhibitor can overcome resistance to CB-5083 and NMS-873 in colorectal cancer cells; European Journal of Medicinal Chemistry; Vol. 213; Art. No. 113148; PMCID PMC7954469; 10.1016/j.ejmech.2020.113148
• McRose, Darcy L. and Newman, Dianne K. (2021) Redox-active antibiotics enhance phosphorus bioavailability; Science; Vol. 371; No. 6533; 1033-1037; PMCID PMC8051141; 10.1126/science.abd1515
• Cohen, Alexander A.; Yang, Zhi; et el. (2021) Construction, characterization, and immunization of nanoparticles that display a diverse array of influenza HA trimers; PLoS ONE; Vol. 16; No. 3; Art. No. e0247963; PMCID PMC7932532; 10.1371/journal.pone.0247963
• Rocchi, Francesca; Oya, Hiroyuki; et el. (2021) Common Fronto-temporal Effective Connectivity in Humans and Monkeys; Neuron; Vol. 109; No. 5; 852-868; PMCID PMC7927917; 10.1016/j.neuron.2020.12.026
• Yang, Yang and Arnold, Frances H. (2021) Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene Transfer; Accounts of Chemical Research; Vol. 54; No. 5; 1209-1225; PMCID PMC7931446; 10.1021/acs.accounts.0c00591
• Chivukula, Srinivas; Zhang, Carey Y.; et el. (2021) Neural encoding of actual and imagined touch within human posterior parietal cortex; eLife; Vol. 10; Art. No. e61646; PMCID PMC7924956; 10.7554/eLife.61646
• Needham, Brittany D.; Adame, Mark D.; et el. (2021) Plasma and Fecal Metabolite Profiles in Autism Spectrum Disorder; Biological Psychiatry; Vol. 89; No. 5; 451-462; PMCID PMC7867605; 10.1016/j.biopsych.2020.09.025
• Bain, William G.; Peñaloza, Hernán F.; et el. (2021) Lower Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an Inflammatory Phenotype; CHEST; Vol. 159; No. 3; 963-966; PMCID PMC7671922; 10.1016/j.chest.2020.10.083
• Rothenberg, Ellen V. (2021) Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and human; Experimental Hematology; Vol. 95; 1-12; PMCID PMC8018899; 10.1016/j.exphem.2020.12.005
• Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2021) How transcription factors drive choice of the T cell fate; Nature Reviews. Immunology; Vol. 21; No. 3; 162-176; 10.1038/s41577-020-00426-6
• Chai, C. M.; Wen, C.; et el. (2021) Discovery of a highly-conserved behavioral role for an interneuron neuropeptide receptor; Integrative and Comparative Biology; Vol. 61; No. S1; E124-E125; 10.1093/icb/icab001
• Brovero, Savannah G.; Fortier, Julia C.; et el. (2021) Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules; eLife; Vol. 10; Art. No. e63101; 10.7554/eLife.63101
• Refahi, Yassin; Zardilis, Argyris; et el. (2021) A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control; Developmental Cell; Vol. 56; No. 4; 540-556; PMCID PMC8519405; 10.1016/j.devcel.2021.01.019
• Oberhofer, Georg; Ivy, Tobin; et el. (2021) Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene drive; PLoS Genetics; Vol. 17; No. 2; Art. No. e1009385; 10.1371/journal.pgen.1009385
• Ashaber, Mária; Tomina, Yusuke; et el. (2021) Anatomy and activity patterns in a multifunctional motor neuron and its surrounding circuits; eLife; Vol. 10; Art. No. e61881; 10.7554/eLife.61881
• Vastola, John J.; Gorin, Gennady; et el. (2021) Learning the Dynamics of Bursty Transcription and Splicing using Ultra-Fast Parameter Inference and New Analytical Solutions of the Chemical Master Equation; Biophysical Journal; Vol. 120; No. 3; 135A; 10.1016/j.bpj.2020.11.1018
• Gorin, Gennady and Pachter, Lior (2021) Analysis of Length Biases in Single-Cell RNA Sequencing of Unspliced mRNA by Markov Modeling; Biophysical Journal; Vol. 120; No. 3; 81A; 10.1016/j.bpj.2020.11.706
• Esswein, Shannon R. and Bjorkman, Pamela J. (2021) Structural Basis for Germline Antibody Binding to Zika Virus Envelope Domain III; Biophysical Journal; Vol. 120; No. 3; 276A-277A; 10.1016/j.bpj.2020.11.1760
• Galstyan, Vahe; Suresh, Pooja; et el. (2021) Understanding the Mechanisms that Give Rise to the Mammalian Spindle’s Response to Force using Theory and Microneedle Manipulation; Biophysical Journal; Vol. 120; No. 3; 347A; 10.1016/j.bpj.2020.11.2158
• Srivastava, Vasudha; Hu, Jennifer L.; et el. (2021) Identifying Enthalpic Barriers to Entropically-Driven Structural Disruption in Breast Cancers; Biophysical Journal; Vol. 120; No. 3; 196A; 10.1016/j.bpj.2020.11.1347
• Cohen, Alexander A.; Gnanapragasam, Priyanthi N. P.; et el. (2021) Mosaic nanoparticles elicit cross-reactive immune responses to zoonotic coronaviruses in mice; Science; Vol. 371; No. 6530; 735-741; PMCID PMC7928838; 10.1126/science.abf6840
• Jensen, Grant (2021) Imaging Biopolymers In Vivo Directly with Cryo-ET: Trim5 Nets and IRE-1 Helices; Biophysical Journal; Vol. 120; No. 3, Supp. 1; 1a; 10.1016/j.bpj.2020.11.046
• Takei, Yodai; Yun, Jina; et el. (2021) Integrated spatial genomics reveals global architecture of single nuclei; Nature; Vol. 590; No. 7845; 344-350; PMCID PMC7878433; 10.1038/s41586-020-03126-2
• Klionsky, Daniel J.; Abdel-Aziz, Amal Kamal; et el. (2021) Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition); Autophagy; Vol. 17; No. 1; 1-382; 10.1080/15548627.2020.1797280
• Amadei, Gianluca; Lau, Kasey Y. C.; et el. (2021) Inducible Stem-Cell-Derived Embryos Capture Mouse Morphogenetic Events In Vitro; Developmental Cell; Vol. 56; No. 3; 366-382; PMCID PMC7883308; 10.1016/j.devcel.2020.12.004
• Singhal, Vipul; Tuza, Zoltan A.; et el. (2021) A MATLAB toolbox for modeling genetic circuits in cell-free systems; Synthetic Biology; Vol. 6; No. 1; Art. No. ysab007; PMCID PMC8102020; 10.1093/synbio/ysab007
• Hutchins, Erica J.; Piacentino, Michael L.; et el. (2021) Transcriptomic Identification of Draxin-Responsive Targets During Cranial Neural Crest EMT; Frontiers in Physiology; Vol. 12; Art. No. 624037; PMCID PMC7886793; 10.3389/fphys.2021.624037
• Sozen, Berna; Demir, Necdet; et el. (2021) BMP signalling is required for extra-embryonic ectoderm development during pre-to-post-implantation transition of the mouse embryo; Developmental Biology; Vol. 470; 84-94; PMCID PMC8219371; 10.1016/j.ydbio.2020.11.005
• Nguyen, Lam T.; Oikonomou, Catherine M.; et el. (2021) Simulations of Proposed Mechanisms of FtsZ-Driven Cell Constriction; Journal of Bacteriology; Vol. 203; No. 3; Art. No. e00576-20; PMCID PMC7886793; 10.1128/JB.00576-20
• Metcalfe, Kyle S.; Murali, Ranjani; et el. (2021) Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy; ISME Journal; Vol. 15; No. 2; 377-396; PMCID PMC8027057; 10.1038/s41396-020-00757-1
• Nicolas, William J.; Ghosal, Debnath; et el. (2021) Structure of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton by Electron Cryotomography; Journal of Bacteriology; Vol. 203; No. 3; Art. No. e00371-20; PMCID PMC7811197; 10.1128/JB.00371-20
• Saif-ur-Rehman, Muhammad; Ali, Omair; et el. (2021) SpikeDeep-classifier: a deep-learning based fully automatic offline spike sorting algorithm; Journal of Neural Engineering; Vol. 18; No. 1; Art. No. 016009; 10.1088/1741-2552/abc8d4
• Liao, Hsin-I; Kashino, Makio; et el. (2021) Attractiveness in the Eyes: A Possibility of Positive Loop between Transient Pupil Constriction and Facial Attraction; Journal of Cognitive Neuroscience; Vol. 33; No. 2; 315-340; 10.1162/jocn_a_01649
• Niklasson, Camilla U.; Fredlund, Elina; et el. (2021) Hypoxia inducible factor‐2α importance for migration, proliferation, and self‐renewal of trunk neural crest cells; Developmental Dynamics; Vol. 250; No. 2; 191-236; 10.1002/dvdy.253
• Hartmann, Felix J.; Mrdjen, Dunja; et el. (2021) Single-cell metabolic profiling of human cytotoxic T cells; Nature Biotechnology; Vol. 39; No. 2; 186-197; 10.1038/s41587-020-0651-8
• Shin, Boyoung; Hosokawa, Hiroyuki; et el. (2021) Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 4; Art. No. e2019655118; PMCID PMC7848575; 10.1073/pnas.2019655118
• Adashev, Vladimir E.; Kotov, Alexei A.; et el. (2021) Stellate Genes and the piRNA Pathway in Speciation and Reproductive Isolation of Drosophila melanogaster; Frontiers in Genetics; Vol. 11; Art. No. 610665; PMCID PMC7874207; 10.3389/fgene.2020.610665
• Chiu, Hui; Hoopfer, Eric D.; et el. (2021) A circuit logic for sexually shared and dimorphic aggressive behaviors in Drosophila; Cell; Vol. 184; No. 2; 507-520; PMCID PMC7856078; 10.1016/j.cell.2020.11.048
• Weberling, Antonia and Zernicka-Goetz, Magdalena (2021) Trophectoderm mechanics direct epiblast shape upon embryo implantation; Cell Reports; Vol. 34; No. 3; Art. No. 108655; PMCID PMC7816124; 10.1016/j.celrep.2020.108655
• Morrison, Muir; Razo-Mejia, Manuel; et el. (2021) Reconciling kinetic and thermodynamic models of bacterial transcription; PLOS Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID PMC7845990; 10.1371/journal.pcbi.1008572
• Wang, Ruohan; Mishra, Prashant; et el. (2021) Identification of new OPA1 cleavage site reveals that short isoforms regulate mitochondrial fusion; Molecular Biology of the Cell; Vol. 32; No. 2; 157-168; PMCID PMC8120690; 10.1091/mbc.e20-09-0605
• Sim, Min Sub; Skennerton, Connor T.; et el. (2021) Physiological, genomic, and sulfur isotopic characterization of methanol metabolism by Desulfovibrio carbinolicus; PLoS ONE; Vol. 16; No. 1; Art. No. e0245069; 10.1371/journal.pone.0245069
• Wong, Wan-Rong; Maher, Shayda; et el. (2021) Conserved missense variant in ALDH1A3 ortholog impairs fecundity in C. elegans; microPublication Biology; Art. No. 000357; 10.17912/micropub.biology.000357
• Karigo, Tomomi; Kennedy, Ann; et el. (2021) Distinct hypothalamic control of same- and opposite-sex mounting behaviour in mice; Nature; Vol. 589; No. 7841; 258-263; 10.1038/s41586-020-2995-0
• Olariu, Victor; Yui, Mary A.; et el. (2021) Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment; Cell Reports; Vol. 34; No. 2; Art. No. 108622; PMCID PMC7943435; 10.1016/j.celrep.2020.108622
• Yu, Timothy C.; Liu, Winnie L.; et el. (2021) Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems; Nature Communications; Vol. 12; Art. No. 325; PMCID PMC7804116; 10.1038/s41467-020-20094-3
• Shin, Chun-Shik; Meng, Shuxia; et el. (2021) LONP1 and mtHSP70 cooperate to promote mitochondrial protein folding; Nature Communications; Vol. 12; Art. No. 265; PMCID PMC7801493; 10.1038/s41467-020-20597-z
• Carbon, Seth; Douglass, Eric; et el. (2021) Gene Ontology resource: enriching a GOld mine; Nucleic Acids Research; Vol. 49; No. D1; D325-D334; PMCID PMC7779012; 10.1093/nar/gkaa1113
• Watkins-Dulaney, Ella; Straathof, Sabine; et el. (2021) Tryptophan Synthase: Biocatalyst Extraordinaire; ChemBioChem; Vol. 22; No. 1; 5-16; PMCID PMC7935429; 10.1002/cbic.202000379
• Kato, Mihoko; Kolotuev, Irina; et el. (2021) Extrasynaptic acetylcholine signaling through a muscarinic receptor regulates cell migration; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 1; Art. No. e1904338118; PMCID PMC7817160; 10.1073/pnas.1904338118
• Kato, Mitsuo; Abdollahi, Maryam; et el. (2021) miR-379 deletion ameliorates features of diabetic kidney disease by enhancing adaptive mitophagy via FIS1; Communications Biology; Vol. 4; Art. No. 30; PMCID PMC7782535; 10.1038/s42003-020-01516-w
• LaPelusa, Michael; Donoviel, Dorit; et el. (2021) Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020; Microbiome; Vol. 9; Art. No. 2; PMCID PMC7781430; 10.1186/s40168-020-00951-5
• Wang, Feng; Moen, Derek R.; et el. (2021) Enzyme Replacement Therapy for Mucopolysaccharidosis IIID using Recombinant Human α-N-Acetylglucosamine-6-Sulfatase in Neonatal Mice; Molecular Pharmaceutics; Vol. 18; No. 1; 214-227; PMCID PMC8362844; 10.1021/acs.molpharmaceut.0c00831
• Bárcena, Montserrat; Barnes, Christopher O.; et el. (2021) Structural biology in the fight against COVID-19; Nature Structural & Molecular Biology; Vol. 28; No. 1; 2-7; 10.1038/s41594-020-00544-8
• Bannon, Dylan; Moen, Erick; et el. (2021) DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes; Nature Methods; Vol. 18; No. 1; 43-45; 10.1038/s41592-020-01023-0
• Rothenberg, Ellen V. and Göttgens, Berthold (2021) How haematopoiesis research became a fertile ground for regulatory network biology as pioneered by Eric Davidson; Current Opinion in Hematology; Vol. 28; No. 1; 1-10; PMCID PMC7755131; 10.1097/moh.0000000000000628
• Mickol, Rebecca L.; Louyakis, Artemis S.; et el. (2021) Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR; Microbiology Resource Announcements; Vol. 10; No. 1; Art. No. e01302-20; 10.1128/mra.01302-20
• Irizarry, Jihyun and Stathopoulos, Angelike (2021) Dynamic patterning by morphogens illuminated by cis-regulatory studies; Development; Vol. 148; No. 2; Art. No. dev196113; PMCID PMC7847269; 10.1242/dev.196113
• Hay, Bruce A.; Oberhofer, Georg; et el. (2021) Engineering the Composition and Fate of Wild Populations with Gene Drive; Annual Review of Entomology; Vol. 66; 407-434; 10.1146/annurev-ento-020117-043154
• Galstyan, Vahe; Husain, Kabir; et el. (2020) Proofreading through spatial gradients; eLife; Vol. 9; Art. No. e60415; 10.7554/eLife.60415
• Unger, Elizabeth K.; Keller, Jacob P.; et el. (2020) Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning; Cell; Vol. 183; No. 7; 1986-2002; PMCID PMC8025677; 10.1016/j.cell.2020.11.040
• Lee, Daniel A.; Oikonomou, Grigorios; et el. (2020) Neuropeptide VF neurons promote sleep via the serotonergic raphe; eLife; Vol. 9; Art. No. e54491; PMCID PMC7748413; 10.7554/eLife.54491
• Lisitskaya, Lidia; Petushkov, Ivan; et el. (2020) Recognition of double-stranded DNA by the Rhodobacter sphaeroides Argonaute protein; Biochemical and Biophysical Research Communications; Vol. 533; No. 4; 1484-1489; 10.1016/j.bbrc.2020.10.051
• Parker, Joseph and Struhl, Gary (2020) Control of Drosophila wing size by morphogen range and hormonal gating; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 50; 31935-31944; 10.1073/pnas.2018196117
• Jafari, Matiar; Aflalo, Tyson; et el. (2020) The human primary somatosensory cortex encodes imagined movement in the absence of sensory information; Communications Biology; Vol. 3; No. 1; Art. No. 757; 10.1038/s42003-020-01484-1
• Zhu, Meng; Cornwall-Scoones, Jake; et el. (2020) Developmental clock and mechanism of de novo polarization of the mouse embryo; Science; Vol. 370; No. 6522; Art. No. eabd2703; PMCID PMC8210885; 10.1126/science.abd2703
• Booeshaghi, A. Sina; Lubock, Nathan B.; et el. (2020) Reliable and accurate diagnostics from highly multiplexed sequencing assays; Scientific Reports; Vol. 10; Art. No. 21759; PMCID PMC7730459; 10.1038/s41598-020-78942-7
• Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Principles of Self-Organization of the Mammalian Embryo; Cell; Vol. 183; No. 6; 1467-1478; PMCID PMC8212876; 10.1016/j.cell.2020.11.003
• Zhang, Xianjun; Carter, Stephen D.; et el. (2020) Visualizing insulin vesicle neighborhoods in β cells by cryo-electron tomography; Science Advances; Vol. 6; No. 50; Art. No. eabc8258; PMCID PMC7725471; 10.1126/sciadv.abc8258
• Vu, Tri T. M.; Mitchell, Dylan C.; et el. (2020) The Arg/N-degron pathway targets transcription factors and regulates specific genes; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 49; 31094-31104; PMCID PMC7733807; 10.1073/pnas.2020124117
• Linsky, Thomas W.; Vergara, Renan; et el. (2020) De novo design of potent and resilient hACE2 decoys to neutralize SARS-CoV-2; Science; Vol. 370; No. 6521; 1208-1214; PMCID PMC7920261; 10.1126/science.abe0075
• Pool, Allan-Hermann; Wang, Tongtong; et el. (2020) The cellular basis of distinct thirst modalities; Nature; Vol. 588; No. 7836; 112-117; PMCID PMC7718410; 10.1038/s41586-020-2821-8
• Karman, Zoltan; Rethi-Nagy, Zsuzsanna; et el. (2020) Novel perspectives of target-binding by the evolutionarily conserved PP4 phosphatase; Open Biology; Vol. 10; No. 12; Art. No. 200343; PMCID PMC7776573; 10.1098/rsob.200343
• Hung, Shao-Min; Wu, Daw-An; et el. (2020) Implicit response incompatibility slowed down asymptomatic individuals with Alzheimer’s disease pathology; Alzheimer’s & Dementia; Vol. 16; No. S4, pt 1; Art. No. e044884; 10.1002/alz.044884
• Cabeen, Ryan P.; Glass, Laura; et el. (2020) The connections of the insular VEN area in great apes: A histologically-guided ex vivo diffusion tractography study; Progress in Neurobiology; Vol. 195; Art. No. 101941; PMCID PMC7806049; 10.1016/j.pneurobio.2020.101941
• Tsao, Doris Y. (2020) Does finding a face cell tell us anything much at all?; Progress in Neurobiology; Vol. 195; Art. No. 101925; 10.1016/j.pneurobio.2020.101925
• Cai, L. (2020) Transcriptome-Scale Super-Resolved Imaging in Tissues by RNA SeqFISH; European Journal of Human Genetics; Vol. 28; No. S1; 10; 10.1038/s41431-020-00740-6
• Needham, Brittany D.; Kaddurah-Daouk, Rima; et el. (2020) Gut microbial molecules in behavioural and neurodegenerative conditions; Nature Reviews Neuroscience; Vol. 21; No. 12; 717-731; 10.1038/s41583-020-00381-0
• Garcez, Aguinaldo S.; Kaplan, Mohammed; et el. (2020) Effects of antimicrobial photodynamic therapy on antibiotic-resistant Escherichia coli; Photodiagnosis and Photodynamic Therapy; Vol. 32; Art. No. 102029; PMCID PMC7744317; 10.1016/j.pdpdt.2020.102029
• Hesse, Janis K. and Tsao, Doris Y. (2020) The macaque face patch system: a turtle’s underbelly for the brain; Nature Reviews. Neuroscience; Vol. 21; No. 12; 695-716; 10.1038/s41583-020-00393-w
• Allman, John (2020) Charlie and Joyce at the Intersection of Science and Art; Progress in Neurobiology; Vol. 195; Art. No. 101922; 10.1016/j.pneurobio.2020.101922
• Svensson, Valentine; da Veiga Beltrame, Eduardo; et el. (2020) A curated database reveals trends in single cell transcriptomics; Database: The Journal of Biological Databases and Curation; Vol. 2020; Art. No. baaa073; PMCID PMC7698659; 10.1093/database/baaa073
• Kuzmenko, Anton; Oguienko, Anastasiya; et el. (2020) DNA targeting and interference by a bacterial Argonaute nuclease; Nature; Vol. 587; No. 7835; 632-637; 10.1038/s41586-020-2605-1
• Dobreva, Tatyana; Brown, David; et el. (2020) Single cell profiling of capillary blood enables out of clinic human immunity studies; Scientific Reports; Vol. 10; Art. No. 20540; PMCID PMC7688970; 10.1038/s41598-020-77073-3
• Pluchinsky, Adam J.; Wackelin, Daniel J.; et el. (2020) High Throughput Screening with SAMDI Mass Spectrometry for Directed Evolution; Journal of the American Chemical Society; Vol. 142; No. 47; 19804-19808; 10.1021/jacs.0c07828
• Banerjee, Abhik K.; Blanco, Mario R.; et el. (2020) SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses; Cell; Vol. 183; No. 5; 1325-1339; PMCID PMC7543886; 10.1016/j.cell.2020.10.004
• Carter, Stephen D.; Mamede, João I.; et el. (2020) Correlated cryogenic fluorescence microscopy and electron cryo-tomography shows that exogenous TRIM5α can form hexagonal lattices or autophagy aggregates in vivo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 47; 29702-29711; PMCID PMC7703684; 10.1073/pnas.1920323117
• Adachi, Yoshihiro; Kato, Takashi; et el. (2020) Drp1 Tubulates the ER in a GTPase-Independent Manner; Molecular Cell; Vol. 80; No. 4; 621-632; PMCID PMC7680448; 10.1016/j.molcel.2020.10.013
• Mullin, Sean W.; Wanger, Greg; et el. (2020) Patterns of in situ Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer; Frontiers in Microbiology; Vol. 11; Art. No. 536535; PMCID PMC7711152; 10.3389/fmicb.2020.536535
• Holman, Elizabeth A.; Fang, Yuan-Sheng; et el. (2020) Autonomous adaptive data acquisition for scanning hyperspectral imaging; Communications Biology; Vol. 3; No. 1; Art. No. 684; 10.1038/s42003-020-01385-3
• Chen, Sisi; Rivaud, Paul; et el. (2020) Dissecting heterogeneous cell populations across drug and disease conditions with PopAlign; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 46; 28784-28794; PMCID PMC7682438; 10.1073/pnas.2005990117
• Bowren, Mark, Jr.; Adolphs, Ralph; et el. (2020) Multivariate Lesion-Behavior Mapping of General Cognitive Ability and Its Psychometric Constituents; Journal of Neuroscience; Vol. 40; No. 46; 8924-8937; PMCID PMC7659456; 10.1523/jneurosci.1415-20.2020
• Hesse, Janis Karan and Tsao, Doris Y. (2020) A new no-report paradigm reveals that face cells encode both consciously perceived and suppressed stimuli; eLife; Vol. 9; Art. No. e58360; PMCID PMC7676863; 10.7554/elife.58360
• Luo, Yicheng; Fefelova, Elena; et el. (2020) Repression of interrupted and intact rDNA by the SUMO pathway in Drosophila melanogaster; eLife; Vol. 2020; No. 9; Art. No. e52416; PMCID PMC7676866; 10.7554/eLife.52416
• Rix, Gordon; Watkins-Dulaney, Ella J.; et el. (2020) Scalable continuous evolution for the generation of diverse enzyme variants encompassing promiscuous activities; Nature Communications; Vol. 11; Art. No. 5644; PMCID PMC7648111; 10.1038/s41467-020-19539-6
• Pandya-Jones, Amy; Markaki, Yolanda; et el. (2020) A protein assembly mediates Xist localization and gene silencing; Nature; Vol. 587; No. 7832; 145-151; PMCID PMC7644664; 10.1038/s41586-020-2703-0
• Mehrab, Zakaria; Mobin, Jaiaid; et el. (2020) A faster implementation of association mapping from k-mers; Bio-protocol; Vol. 10; No. 21; Art. No. e3815; 10.21769/bioprotoc.3815
• Li, Yuwei; Gonzalez, Walter G.; et el. (2020) Macropinocytosis-mediated membrane recycling drives neural crest migration by delivering F-actin to the lamellipodium; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 44; 27400-27411; PMCID PMC7959501; 10.1073/pnas.2007229117
• Stundl, Jan; Pospisilova, Anna; et el. (2020) Migratory patterns and evolutionary plasticity of cranial neural crest cells in ray-finned fishes; Developmental Biology; Vol. 467; No. 1-2; 14-29; 10.1016/j.ydbio.2020.08.007
• Fatalska, Agnieszka; Dzhindzhev, Nikola S.; et el. (2020) Interaction interface in the C-terminal parts of centriole proteins Sas6 and Ana2; Open Biology; Vol. 10; No. 11; Art. No. 200221; PMCID PMC7729032; 10.1098/rsob.200221
• Dubois, Julien; Eberhardt, Frederick; et el. (2020) Personality beyond taxonomy; Nature Human Behaviour; Vol. 4; No. 11; 1110-1117; 10.1038/s41562-020-00989-3
• Grant, Stephen and Lester, Henry A. (2020) Proteins for increased surface expression of the α6β4 nicotinic acetylcholine receptor: Nothing but good news?; Journal of Clinical Investigation; Vol. 130; No. 11; 5685-5687; PMCID PMC7598034; 10.1172/jci143197
• Kennedy, Ann; Kunwar, Prabhat S.; et el. (2020) Stimulus-specific hypothalamic encoding of a persistent defensive state; Nature; Vol. 586; No. 7831; 730-734; PMCID PMC7606611; 10.1038/s41586-020-2728-4
• He, Yun; Shi, Junhui; et el. (2020) Label-free imaging of lipid-rich biological tissues by mid-infrared photoacoustic microscopy; Journal of Biomedical Optics; Vol. 25; No. 10; Art. No. 106506; 10.1117/1.jbo.25.10.106506
• Aflalo, T.; Zhang, C. Y.; et el. (2020) A shared neural substrate for action verbs and observed actions in human posterior parietal cortex; Science Advances; Vol. 6; No. 43; Art. No. eabb3984; 10.1126/sciadv.abb3984
• Wang, Zijun; Barnes, Christopher O.; et el. (2020) A broadly neutralizing macaque monoclonal antibody against the HIV-1 V3-Glycan patch; eLife; Vol. 9; Art. No. e61991; PMCID PMC7577740; 10.7554/eLife.61991
• Fornace, Mark E.; Porubsky, Nicholas J.; et el. (2020) A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed; ACS Synthetic Biology; Vol. 9; No. 10; 2665-2678; 10.1021/acssynbio.9b00523
• Le, Henry H.; Wrobel, Chester J. J.; et el. (2020) Modular metabolite assembly in Caenorhabditis elegans depends on carboxylesterases and formation of lysosome-related organelles; eLife; Vol. 2020; No. 9; Art. No. e61886; PMCID PMC7641594; 10.7554/eLife.61886
• Dunham, Noah P. and Arnold, Frances H. (2020) Nature’s Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases; ACS Catalysis; Vol. 10; No. 20; 12239-12255; PMCID PMC7710332; 10.1021/acscatal.0c03606
• Tang, Weiyi and Bronner, Marianne E. (2020) Neural crest lineage analysis: from past to future trajectory; Development; Vol. 147; No. 20; Art. No. dev193193; PMCID PMC7595686; 10.1242/dev.193193
• Vangala, Pranitha; Murphy, Rachel; et el. (2020) High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection; Molecular Cell; Vol. 80; No. 2; 359-373; PMCID PMC7572724; 10.1016/j.molcel.2020.09.005
• Badimon, Ana; Strasburger, Hayley J.; et el. (2020) Negative feedback control of neuronal activity by microglia; Nature; Vol. 586; No. 7829; 417-423; 10.1038/s41586-020-2777-8
• Moreaux, Laurent C.; Yatsenko, Dimitri; et el. (2020) Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity —at Depth and in Real Time; Neuron; Vol. 108; No. 1; 66-92; PMCID PMC8061790; 10.1016/j.neuron.2020.09.043
• Stagkourakis, Stefanos; Spigolon, Giada; et el. (2020) Experience-dependent plasticity in an innate social behavior is mediated by hypothalamic LTP; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 41; 25789-25799; PMCID PMC7568289; 10.1073/pnas.2011782117
• Weaver, Sara J.; Ortega, Davi R.; et el. (2020) CryoEM structure of the type IVa pilus secretin required for natural competence in Vibrio cholerae; Nature Communications; Vol. 11; Art. No. 5080; PMCID PMC7545093; 10.1038/s41467-020-18866-y
• Treuner-Lange, Anke; Chang, Yi-Wei; et el. (2020) PilY1 and minor pilins form a complex priming the type IVa pilus in Myxococcus xanthus; Nature Communications; Vol. 11; Art. No. 5054; PMCID PMC7541494; 10.1038/s41467-020-18803-z
• Dahlstrom, Kurt M.; McRose, Darcy L.; et el. (2020) Keystone metabolites of crop rhizosphere microbiomes; Current Biology; Vol. 30; No. 19; R1131-R1137; PMCID PMC8059773; 10.1016/j.cub.2020.08.005
• Romero-Wolf, Maile; Shin, Boyoung; et el. (2020) Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development; Journal of Cell Biology; Vol. 219; No. 10; Art. No. e202005093; PMCID PMC7659720; 10.1083/jcb.202005093
• Lynch, Cian J.; Bernad, Raquel; et el. (2020) Global hyperactivation of enhancers stabilizes human and mouse naive pluripotency through inhibition of CDK8/19 Mediator kinases; Nature Cell Biology; Vol. 22; No. 10; 1223-1238; 10.1038/s41556-020-0573-1
• Piacentino, Michael L.; Li, Yuwei; et el. (2020) Epithelial-to-mesenchymal transition and different migration strategies as viewed from the neural crest; Current Opinion in Cell Biology; Vol. 66; 43-50; 10.1016/j.ceb.2020.05.001
• Sun, Simo; Shinya, Ryoji; et el. (2020) Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1; Microbiology Resource Announcements; Vol. 9; No. 43; Art. No. e01000-20; PMCID PMC7585841; 10.1128/mra.01000-20
• Court, Robert; Namiki, Shigehiro; et el. (2020) A Systematic Nomenclature for the Drosophila Ventral Nerve Cord; Neuron; Vol. 107; No. 6; 1071-1079; PMCID PMC7611823; 10.1016/j.neuron.2020.08.005
• Gandhi, Shashank; Hutchins, Erica J.; et el. (2020) Bimodal function of chromatin remodeler Hmga1 in neural crest induction and Wnt-dependent emigration; eLife; Vol. 2020; No. 9; Art. No. e57779; PMCID PMC7591248; 10.7554/elife.57779
• Kumagai, Akiko and Dunphy, William G. (2020) Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication; Cell Reports; Vol. 32; No. 12; Art. No. 108178; PMCID PMC7523632; 10.1016/j.celrep.2020.108178
• Parker, Joseph and Rabeling, Christian (2020) Evolution: Shape-Shifting Social Parasites; Current Biology; Vol. 30; No. 18; R1049-R1051; 10.1016/j.cub.2020.07.010
• Ireland, William T.; Beeler, Suzannah M.; et el. (2020) Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time; eLife; Vol. 2020; No. 9; Art. No. e55308; PMCID PMC7567609; 10.7554/eLife.55308
• Abbott, Larry F.; Bock, Davi D.; et el. (2020) The Mind of a Mouse; Cell; Vol. 182; No. 6; 1372-1376; 10.1016/j.cell.2020.08.010
• Dar, Daniel; Thomashow, Linda S.; et el. (2020) Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes; eLife; Vol. 2020; No. 9; Art. No. e59726; 10.7554/eLife.59726
• Yun, Kyongsik; Bhattacharya, Joydeep; et el. (2020) Causally Linking Neural Dominance to Perceptual Dominance in a Multisensory Conflict; Neuroreport; Vol. 31; No. 13; 991-998; 10.1097/WNR.0000000000001505
• Panda, Pallavi; Kovacs, Levente; et el. (2020) Tissue specific requirement of Drosophila Rcd4 for centriole duplication and ciliogenesis; Journal of Cell Biology; Vol. 219; No. 8; Art. No. e201912154; PMCID PMC7401805; 10.1083/jcb.201912154
• Li, Ya-tang; Turan, Zeynep; et el. (2020) Functional Architecture of Motion Direction in the Mouse Superior Colliculus; Current Biology; Vol. 30; No. 17; 3304-3315; PMCID PMC8221388; 10.1016/j.cub.2020.06.023
• Han, Han; Geng, Yuan; et el. (2020) Overlapping and Distinct Roles of HAM Family Genes in Arabidopsis Shoot Meristems; Frontiers in Plant Science; Vol. 11; Art. No. 541968; PMCID PMC7498855; 10.3389/fpls.2020.541968
• Wang, Xun and Rothenberg, Ellen V. (2020) Illuminating the core of adaptive immunity—how the regulatory genome controls Rag chromatin dynamics; Science Immunology; Vol. 5; No. 51; Art. No. eabd6427; 10.1126/sciimmunol.abd6427
• Bähr, Susanne; Brinkmann-Chen, Sabine; et el. (2020) Selective Enzymatic Oxidation of Silanes to Silanols; Angewandte Chemie International Edition; Vol. 59; No. 36; 15507-15511; PMCID PMC7511438; 10.1002/anie.202002861
• Wang, Xiao-Jing; Hu, Hailan; et el. (2020) Computational neuroscience: a frontier of the 21st century; National Science Review; Vol. 7; No. 9; 1418-1422; 10.1093/nsr/nwaa129
• Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2020) Starting life in space; National Science Review; Vol. 7; No. 9; 1447-1448; 10.1093/nsr/nwaa102
• Baetica, Ania-Ariadna; Leong, Yoke Peng; et el. (2020) Guidelines for designing the antithetic feedback motif; Physical Biology; Vol. 17; No. 5; Art. No. 055002; 10.1088/1478-3975/ab8454
• Cabeen, Ryan P.; Allman, John M.; et el. (2020) THC Exposure is Reflected in the Microstructure of the Cerebral Cortex and Amygdala of Young Adults; Cerebral Cortex; Vol. 30; No. 9; 4949-4963; PMCID PMC7947183; 10.1093/cercor/bhaa087
• Baiocchi, Tiffany; Anesko, Kyle; et el. (2020) Signaling by AWC Olfactory Neurons Is Necessary for Caenorhabditis elegans’ Response to Prenol, an Odor Associated with Nematode-Infected Insects; Genetics; Vol. 216; No. 1; 145-157; PMCID PMC7463287; 10.1534/genetics.120.303280
• Ninova, Maria and Fejes Tóth, Katalin (2020) New players on the piRNA field; Nature Structural & Molecular Biology; Vol. 27; No. 9; 771-779; 10.1038/s41594-020-0484-7
• Wu, Zachary; Yang, Kevin K.; et el. (2020) Signal Peptides Generated by Attention-Based Neural Networks; ACS Synthetic Biology; Vol. 9; No. 8; 2154-2161; 10.1021/acssynbio.0c00219
• Wojtowicz, Woj M.; Vielmetter, Jost; et el. (2020) A Human IgSF Cell-Surface Interactome Reveals a Complex Network of Protein-Protein Interactions; Cell; Vol. 182; No. 4; 1027-1043; PMCID PMC7440162; 10.1016/j.cell.2020.07.025
• Barnes, Christopher O.; West, Anthony P., Jr.; et el. (2020) Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies; Cell; Vol. 182; No. 4; 828-842; PMCID PMC7311918; 10.1016/j.cell.2020.06.025
• Robbiani, Davide F.; Gaebler, Christian; et el. (2020) Convergent Antibody Responses to SARS-CoV-2 Infection in Convalescent Individuals; Nature; Vol. 584; No. 7821; 437-442; PMCID PMC7263513; 10.1038/s41586-020-2456-9
• Saunders, Scott H.; Tse, Edmund C. M.; et el. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms; Cell; Vol. 182; No. 4; 919-932; PMCID PMC7457544; 10.1016/j.cell.2020.07.006
• Stepanik, Vincent; Sun, Jingjing; et el. (2020) FGF Pyramus Has a Transmembrane Domain and Cell-Autonomous Function in Polarity; Current Biology; Vol. 30; No. 16; 3141-3153; PMCID PMC7748623; 10.1016/j.cub.2020.06.006
• Khazaei, Tahmineh; Williams, Rory L.; et el. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community; Science Advances; Vol. 6; No. 33; Art. No. eaba0353; PMCID PMC7423363; 10.1126/sciadv.aba0353
• Shahbazi, Marta N.; Wang, Tianren; et el. (2020) Developmental potential of aneuploid human embryos cultured beyond implantation; Nature Communications; Vol. 11; Art. No. 3987; PMCID PMC7418029; 10.1038/s41467-020-17764-7
• Gradinaru, Viviana (2020) Expanding the brain researcher’s toolkit; Science; Vol. 369; No. 6504; 637; 10.1126/science.abd2660
• Tsypin, Lev M.; Saunders, Scott H.; et el. (2020) Draft Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter portucalensis Strain MBL; Microbiology Resource Announcements; Vol. 9; No. 32; Art. No. e00695-20; PMCID PMC7409854; 10.1128/mra.00695-20
• Thompson, W. H.; Nair, R.; et el. (2020) A data resource from concurrent intracranial stimulation and functional MRI of the human brain; Scientific Data; Vol. 7; Art. No. 258; PMCID PMC7406507; 10.1038/s41597-020-00595-y
• Hoffmann, Magnus A. G.; Bar-On, Yotam; et el. (2020) Nanoparticles presenting clusters of CD4 expose a universal vulnerability of HIV-1 by mimicking target cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 31; 18719-18728; PMCID PMC7414181; 10.1073/pnas.2010320117
• Vu, Tri T. M. and Varshavsky, Alexander (2020) The ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron Pathway; Biochemistry; Vol. 59; No. 30; 2796-2812; PMCID PMC7669821; 10.1021/acs.biochem.0c00514
• Zhang, Yandong; Sohn, Changho; et el. (2020) Detecting protein and post-translational modifications in single cells with iDentification and qUantification sEparaTion (DUET); Communications Biology; Vol. 3; Art. No. 420; 10.1038/s42003-020-01132-8
• Fincker, Maeva; Huber, Julie A.; et el. (2020) Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions; Environmental Microbiology; Vol. 22; No. 8; 3188-3204; 10.1111/1462-2920.15061
• Su, Yapeng; Li, Guideng; et el. (2020) Systems biology for investigating drug resistance mechanism of melanoma; Cancer Research; Vol. 80; No. 16; Art. No. 6585; 10.1158/1538-7445.am2020-6585
• Choi, Jaebin; Taal, Adriaan J.; et el. (2020) Fully Integrated Time-Gated 3D Fluorescence Imager for Deep Neural Imaging; IEEE Transactions on Biomedical Circuits and Systems; Vol. 14; No. 4; 636-645; 10.1109/tbcas.2020.3008513
• Gorin, Gennady and Pachter, Lior (2020) Special function methods for bursty models of transcription; Physical Review E; Vol. 102; No. 2; Art. No. 022409; 10.1103/physreve.102.022409
• Dubois, Julien; Oya, Hiroyuki; et el. (2020) Causal Mapping of Emotion Networks in the Human Brain: Framework and Initial Findings; Neuropsychologia; Vol. 145; Art. No. 106571; PMCID PMC5949245; 10.1016/j.neuropsychologia.2017.11.015
• Weatherbee, Bailey A. T.; Glover, David M.; et el. (2020) Expression of SARS-CoV-2 receptor ACE2 and the protease TMPRSS2 suggests susceptibility of the human embryo in the first trimester; Open Biology; Vol. 10; No. 8; 200162; PMCID PMC7479935; 10.1098/rsob.200162
• Razo-Mejia, Manuel; Marzen, Sarah; et el. (2020) First-principles prediction of the information processing capacity of a simple genetic circuit; Physical Review E; Vol. 102; No. 2; Art. No. 022404; 10.1103/PhysRevE.102.022404
• Walton, Sophie J.; Wang, Han; et el. (2020) Caenorhabditis elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene Expression; Genetics; Vol. 215; No. 4; 1039-1054; PMCID PMC7404228; 10.1534/genetics.120.302923
• Liu, Lu; Zhang, Yue; et el. (2020) Characterization of the dimeric CMG/pre-initiation complex and its transition into DNA replication forks; Cellular and Molecular Life Sciences; Vol. 77; No. 15; 3041-3058; PMCID PMC11104849; 10.1007/s00018-019-03333-9
• Partridge, E. Christopher; Chhetri, Surya B.; et el. (2020) Occupancy maps of 208 chromatin-associated proteins in one human cell type; Nature; Vol. 583; No. 7818; 720-728; 10.1038/s41586-020-2023-4
• He, Peng; Williams, Brian A.; et el. (2020) The changing mouse embryo transcriptome at whole tissue and single-cell resolution; Nature; Vol. 583; No. 7818; 760-767; 10.1038/s41586-020-2536-x
• Pleiner, Tino; Pinton Tomaleri, Giovani; et el. (2020) Structural basis for membrane insertion by the human ER membrane protein complex; Science; Vol. 369; No. 6502; 433-436; PMCID PMC7547852; 10.1126/science.abb5008
• Koromila, Theodora; Gao, Fan; et el. (2020) Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos; eLife; Vol. 9; Art. No. e59610; PMCID PMC7417190; 10.7554/eLife.59610
• Ladinsky, Mark S.; Gnanapragasam, Priyanthi N. P.; et el. (2020) Electron tomography visualization of HIV-1 fusion with target cells using fusion inhibitors to trap the pre-hairpin intermediate; eLife; Vol. 9; Art. No. e58411; PMCID PMC7394545; 10.7554/eLife.58411
• Lim, Daniel C.; Joukov, Vladimir; et el. (2020) Redox priming promotes Aurora A activation during mitosis; Science Signaling; Vol. 13; No. 641; Art. No. eabb6707; PMCID PMC8514121; 10.1126/scisignal.abb6707
• Durand-Smet, Pauline; Spelman, Tamsin A.; et el. (2020) Cytoskeletal organization in isolated plant cells under geometry control; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 29; 17399-17408; PMCID PMC7382239; 10.1073/pnas.2003184117
• Chen, Yu-Chuan; Navarrete, Marian S.; et el. (2020) N-myristoyltransferase-1 is necessary for lysosomal degradation and mTORC1 activation in cancer cells; Scientific Reports; Vol. 10; Art. No. 11952; 10.1038/s41598-020-68615-w
• Patel, Abhilash; Murray, Richard M.; et el. (2020) Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop; ACS Synthetic Biology; Vol. 9; No. 7; 1581-1590; 10.1021/acssynbio.0c00023
• Ordyan, Mariam; Bartol, Tom; et el. (2020) Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator; PLoS Computational Biology; Vol. 16; No. 7; Art. No. e1008015; 10.1371/journal.pcbi.1008015
• Quintero-Cadena, Porfirio; Lenstra, Tineke L.; et el. (2020) RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting; Molecular Cell; Vol. 79; No. 2; 207-220; 10.1016/j.molcel.2020.05.030
• Hirokawa, Soichi; Chure, Griffin; et el. (2020) Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination; Nucleic Acids Research; Vol. 48; No. 12; 6726-6739; PMCID PMC7337519; 10.1093/nar/gkaa418
• Han, Yanting and Adolphs, Ralph (2020) Estimating the heritability of psychological measures in the Human Connectome Project dataset; PLoS ONE; Vol. 15; No. 7; Art. No. e0235860; PMCID PMC7347217; 10.1371/journal.pone.0235860
• Wang, Juan; Nikonorova, Inna A.; et el. (2020) Release and targeting of polycystin-2-carrying ciliary extracellular vesicles; Current Biology; Vol. 30; No. 13; R755-R756; PMCID PMC7668157; 10.1016/j.cub.2020.05.079
• Bao, Pinglei; She, Liang; et el. (2020) A map of object space in primate inferotemporal cortex; Nature; Vol. 583; No. 7814; 103-108; PMCID PMC8088388; 10.1038/s41586-020-2350-5
• Wittmann, Bruce J.; Knight, Anders M.; et el. (2020) Diversity-Oriented Enzymatic Synthesis of Cyclopropane Building Blocks; ACS Catalysis; Vol. 10; No. 13; 7112-7116; PMCID PMC7709968; 10.1021/acscatal.0c01888
• Noor El-Nachef, Wael and Bronner, Marianne (2020) The people behind the papers - Wael Noor El-Nachef and Marianne Bronner; Development; Vol. 147; No. 13; Art. No. dev194001; 10.1242/dev.194001
• Irizarry, Jihyun; McGehee, James; et el. (2020) Twist-dependent ratchet functioning downstream from Dorsal revealed using a light-inducible degron; Genes and Development; Vol. 34; No. 13-14; 965-972; PMCID PMC7328519; 10.1101/gad.338194.120
• Varuzhanyan, Grigor and Chan, David C. (2020) Mitochondrial dynamics during spermatogenesis; Journal of Cell Science; Vol. 133; No. 14; Art. No. jcs235937; PMCID PMC7375475; 10.1242/jcs.235937
• El-Nachef, Wael Noor and Bronner, Marianne E. (2020) De novo enteric neurogenesis in post-embryonic zebrafish from Schwann cell precursors rather than resident cell types; Development; Vol. 147; No. 13; Art. No. dev186619; PMCID PMC7375481; 10.1242/dev.186619
• Ramaker, Ryne C.; Hardigan, Andrew A.; et el. (2020) Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations; Genome Research; Vol. 30; No. 7; 939-950; PMCID PMC7397867; 10.1101/gr.260463.119
• Paradiso, Sergio; Brown, Warren S.; et el. (2020) Integration Between Cerebral Hemispheres Contributes to Defense Mechanisms; Frontiers in Psychology; Vol. 11; Art. No. 1534; PMCID PMC7359856; 10.3389/fpsyg.2020.01534
• Aravin, Alexei A. (2020) Pachytene piRNAs as beneficial regulators or a defense system gone rogue; Nature Genetics; Vol. 52; No. 7; 644-645; 10.1038/s41588-020-0656-8
• Minxha, Juri; Adolphs, Ralph; et el. (2020) Flexible recruitment of memory-based choice representations by human medial-frontal cortex; Science; Vol. 368; No. 6498; Art. No. eaba3313; PMCID PMC7531893; 10.1126/science.aba3313
• Dong, Cheng; Chen, Shun-Jia; et el. (2020) Recognition of nonproline N-terminal residues by the Pro/N-degron pathway; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 25; 14158-14167; PMCID PMC7322002; 10.1073/pnas.2007085117
• Houghton, J. L.; Jones, C.; et el. (2020) Resolving micron-scale heterogeneity in porewater δ³⁴S_(H₂S) by combining films for in-situ sulfide capture and secondary ion mass spectrometry; Marine Chemistry; Vol. 223; Art. No. 103810; 10.1016/j.marchem.2020.103810
• Kishore, Ranjana; Arnaboldi, Valerio; et el. (2020) Automated generation of gene summaries at the Alliance of Genome Resources; Database : The Journal of Biological Databases and Curation; Vol. 2020; Art. No. baaa037; PMCID PMC7304461; 10.1093/database/baaa037
• Singla, Shruti; Iwamoto-Stohl, Lisa K.; et el. (2020) Autophagy-mediated apoptosis eliminates aneuploid cells in a mouse model of chromosome mosaicism; Nature Communications; Vol. 11; Art. No. 2958; PMCID PMC7290028; 10.1038/s41467-020-16796-3
• Kyprianou, Christos; Christodoulou, Neophytos; et el. (2020) Basement membrane remodelling regulates mouse embryogenesis; Nature; Vol. 582; No. 7811; 253-258; PMCID PMC7308173; 10.1038/s41586-020-2264-2
• Jia, Zhi-Jun; Gao, Shilong; et el. (2020) Enzymatic Primary Amination of Benzylic and Allylic C(sp³)–H Bonds; Journal of the American Chemical Society; Vol. 142; No. 23; 10279-10283; 10.1021/jacs.0c03428
• Bai, Xiaofei; Bouffard, Jeff; et el. (2020) Caenorhabditis elegans PIEZO Channel Coordinates Multiple Reproductive Tissues to Govern Ovulation; eLife; Vol. 9; Art. No. e53603; 10.7554/eLife.53603
• Mao, Shunfu; Pachter, Lior; et el. (2020) RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition; PLoS ONE; Vol. 15; No. 6; Art. No. e0232946; PMCID PMC7266320; 10.1371/journal.pone.0232946
• Svensson, Valentine; Gayoso, Adam; et el. (2020) Interpretable factor models of single-cell RNA-seq via variational autoencoders; Bioinformatics; Vol. 36; No. 11; 3418-3421; PMCID PMC7267837; 10.1093/bioinformatics/btaa169
• Polonsky, Michal; Round, Krista; et el. (2020) Analysis of luminal breast cancer tumor microenvironment using seqFISH; Cancer Epidemiology, Biomarkers and Prevention; Vol. 29; No. 6; Art. No. B117; 10.1158/1538-7755.disp18-b117
• Ciemniecki, John A. and Newman, Dianne K. (2020) The potential for redox-active metabolites (RAMs) to enhance or unlock anaerobic survival metabolisms in aerobes; Journal of Bacteriology; Vol. 202; No. 11; Art. No. e00797-19; PMCID PMC7221258; 10.1128/jb.00797-19
• Sun, Jingjing; Macabenta, Frank; et el. (2020) Collective Migrations of Drosophila Embryonic Trunk and Caudal Mesoderm-Derived Muscle Precursor Cells; Genetics; Vol. 215; No. 2; 297-322; PMCID PMC7268997; 10.1534/genetics.120.303258
• Yang, Jing; Antin, Parker; et el. (2020) Guidelines and definitions for research on epithelial–mesenchymal transition; Nature Reviews. Molecular Cell Biology; Vol. 21; No. 6; 341-352; 10.1038/s41580-020-0237-9
• Strehle, Mackenzie and Guttman, Mitchell (2020) Xist drives spatial compartmentalization of DNA and protein to orchestrate initiation and maintenance of X inactivation; Current Opinion in Cell Biology; Vol. 64; 139-147; 10.1016/j.ceb.2020.04.009
• Chuk, Tim; Chan, Antoni B.; et el. (2020) Eye movement analysis with switching hidden Markov models; Behavior Research Methods; Vol. 52; No. 3; 1026-1043; PMCID PMC8613150; 10.3758/s13428-019-01298-y
• Cho, Jaehyoung; Gao, Sibyl; et el. (2020) Vennter – An interactive analysis tool for WormBase interaction data using Venn diagrams; microPublication Biology; micropub.biology.000258; PMCID PMC7251783; 10.17912/micropub.biology.000258
• Barlow, Jacob T.; Bogatyrev, Said R.; et el. (2020) A Quantitative Sequencing Framework for Absolute Abundance Measurements of Mucosal and Lumenal Microbial Communities; Nature Communications; Vol. 11; Art. No. 2590; PMCID PMC7244552; 10.1038/s41467-020-16224-6
• Gallego-Hernandez, A. L.; DePas, W. H.; et el. (2020) Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 20; 11010-11017; PMCID PMC7245069; 10.1073/pnas.1916571117
• Oh, Jang-Hyun; Hyun, Ju-Yeon; et el. (2020) Five enzymes of the Arg/N-degron pathway form a targeting complex: The concept of superchanneling; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 20; 10778-10788; PMCID PMC7245096; 10.1073/pnas.2003043117
• Campos, Tulio L.; Korhonen, Pasi K.; et el. (2020) Predicting gene essentiality in Caenorhabditis elegans by feature engineering and machine-learning; Computational and Structural Biotechnology Journal; Vol. 18; 1093-1102; 10.1016/j.csbj.2020.05.008
• Zhou, Andrew Z.; Chen, Kai; et el. (2020) Enzymatic Lactone-Carbene C‒H Insertion to Build Contiguous Chiral Centers; ACS Catalysis; Vol. 10; No. 10; 5393-5398; 10.1021/acscatal.0c01349
• Su, Yapeng; Ko, Melissa E.; et el. (2020) Multi-omic single-cell snapshots reveal multiple independent trajectories to drug tolerance in a melanoma cell line; Nature Communications; Vol. 11; Art. No. 2345; PMCID PMC7214418; 10.1038/s41467-020-15956-9
• Zhang, Ting; Hay, Bruce A.; et el. (2020) Generation, Analyzing and in-vivo Drug Treatment of Drosophila Models with IBMPFD; Bio-protocol; Vol. 10; No. 10; Art. No. e3621; PMCID PMC7842768; 10.21769/bioprotoc.3621
• Laxhuber, Kathrin S.; Morrison, Muir J.; et el. (2020) Theoretical investigation of a genetic switch for metabolic adaptation; PLoS ONE; Vol. 15; No. 5; Art. No. e0226453; PMCID PMC7205307; 10.1371/journal.pone.0226453
• Bassi, Ivan; Luzzani, Francesca; et el. (2020) Prokineticin receptor 2 affects GnRH3 neuron ontogeny but not fertility in zebrafish; Scientific Reports; Vol. 10; Art. No. 7632; PMCID PMC7229164; 10.1038/s41598-020-64077-2
• Esswein, Shannon R.; Gristick, Harry B.; et el. (2020) Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 18; 9865-9875; PMCID PMC7211955; 10.1073/pnas.1919269117
• Ly, Sarah; Lee, Daniel A.; et el. (2020) Evolutionarily Conserved Regulation of Sleep by the Protein Translational Regulator PERK; Current Biology; Vol. 30; No. 9; 1639-1648; PMCID PMC8788386; 10.1016/j.cub.2020.02.030
• Gandhi, Shashank; Ezin, Max; et el. (2020) Reprogramming Axial Level Identity to Rescue Neural-Crest-Related Congenital Heart Defects; Developmental Cell; Vol. 53; No. 3; 300-315; PMCID PMC7255058; 10.1016/j.devcel.2020.04.005
• Yu, Ziqing; Lyu, Weiyuan; et el. (2020) Self-partitioning SlipChip for slip-induced droplet formation and human papillomavirus viral load quantification with digital LAMP; Biosensors and Bioelectronics; Vol. 155; Art. No. 112107; 10.1016/j.bios.2020.112107
• Clamons, Samuel; Qian, Lulu; et el. (2020) Programming and simulating chemical reaction networks on a surface; Journal of the Royal Society Interface; Vol. 17; No. 166; Art. No. 20190790; PMCID PMC7276541; 10.1098/rsif.2019.0790
• Schattgen, Stefan A.; Crawford, Jeremy C.; et el. (2020) Intestinal intraepithelial lymphocyte repertoires are imprinted clonal structures selected for MHC reactivity; Journal of Immunology; Vol. 204; No. S1; Art. No. 84.4
• Spolski, Rosanne; Li, Peng; et el. (2020) Functional dissection of the Il2ra superenhancer reveals developmentally regulated and cell type specific elements; Journal of Immunology; Vol. 204; No. S1; Art. No. 78.16
• Leu, Andy O.; McIlroy, Simon J.; et el. (2020) Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae; mBio; Vol. 11; No. 3; Art. No. e01325-20; PMCID PMC7327174; 10.1128/mBio.01325-20
• Donaldson, Gregory P.; Chou, Wen-Chi; et el. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice; Nature Microbiology; Vol. 5; No. 5; 746-756; 10.1038/s41564-020-0683-3
• Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell types; Nature Methods; Vol. 17; No. 5; 541-550; PMCID PMC7219404; 10.1038/s41592-020-0799-7
• Seo, Jai Woong; Ingham, Elizabeth S.; et el. (2020) Positron emission tomography imaging of novel AAV capsids maps rapid brain accumulation; Nature Communications; Vol. 11; Art. No. 2102; PMCID PMC7193641; 10.1038/s41467-020-15818-4
• Kandul, Nikolay P.; Liu, Junru; et el. (2020) A drug-inducible sex-separation technique for insects; Nature Communications; Vol. 11; Art. No. 2106; PMCID PMC7193620; 10.1038/s41467-020-16020-2
• Hung, Shao-Min; Wu, Daw-An; et el. (2020) Task-induced attention load guides and gates unconscious semantic interference; Nature Communications; Vol. 11; Art. No. 2088; PMCID PMC7190740; 10.1038/s41467-020-15439-x
• Jang, Min Jee; Coughlin, Gerard M.; et el. (2020) Method for High-Throughput, In Situ Characterization of AAV Variant Pools in Intact Tissue Using Ultrasensitive Sequential FISH; Molecular Therapy; Vol. 28; No. 4; 78-79; 10.1016/j.ymthe.2020.04.019
• Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2020) Targeting the Rodent Peripheral Nervous System Efficiently and with Greater Specificity through Intravenous Delivery of AAV Capsids Evolved by Multiplexed-CREATE; Molecular Therapy; Vol. 28; No. 4; 252-253; 10.1016/j.ymthe.2020.04.019
• Padia, Umesh; Brown, David; et el. (2020) Cloud-based Software for NGS Data Management and Analysis for Directed Evolution of Peptide-Based Delivery Vectors; Molecular Therapy; Vol. 28; No. 4; 434-435; 10.1016/j.ymthe.2020.04.019
• Li, Shirley; Kujawski, Maciej; et el. (2020) Use of Click-Chemistry to Make Bivalent Antibodies for Redirection of T Cells: Proof of Concept in an In Vitro HIV Model; Molecular Therapy; Vol. 28; No. 4; 369; 10.1016/j.ymthe.2020.04.019
• Brown, David; Altermatt, Michael; et el. (2020) A Computational and Experimental Platform for Detecting Full Transcriptome Cell Type Tropism of Lowly Expressed Barcoded and Pooled AAV Variants via Single-Cell RNA Sequencing; Molecular Therapy; Vol. 28; No. 4; 80-81; 10.1016/j.ymthe.2020.04.019
• Hori, Acacia; Robinson, J. Elliott; et el. (2020) Recombinant AAVs Target Custom Frataxin Therapeutic Cassettes to Tissues of Pathophysiologic Relevance in Friedreich’s Ataxia; Molecular Therapy; Vol. 28; No. 4; 86-87; 10.1016/j.ymthe.2020.04.019
• Mich, John K.; Gore, Bryan B.; et el. (2020) Building a Toolbox of Compact Enhancers for Cell Type-Specific Gene Expression from AAVs in the Primate Brain; Molecular Therapy; Vol. 28; No. 4; 70; 10.1016/j.ymthe.2020.04.019
• Goertsen, David; Flytzanis, Nicholas C.; et el. (2020) Transduction Profiles of Engineered Adeno-Associated Viral Capsids in Mouse and Marmoset; Molecular Therapy; Vol. 28; No. 4; 269-270; 10.1016/j.ymthe.2020.04.019
• Altermatt, Michael; Brown, David; et el. (2020) In-Depth Parallel Profiling of Tissue and Cell-Type Tropism of AAV Variants by Single-Cell RNA Sequencing; Molecular Therapy; Vol. 28; No. 4; 399-400; 10.1016/j.ymthe.2020.04.019
• Ding, Xiaozhe and Gradinaru, Viviana (2020) Structure-Guided Rational Design of Adeno-Associated Viral Capsids with Expanded Sizes; Molecular Therapy; Vol. 28; No. 4; 226-227; 10.1016/j.ymthe.2020.04.019
• Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Evolution and Investigation of Engineered AAV Capsids Exhibiting Enhanced Transduction of the Central Nervous System with or without Murine Strain Specificity; Molecular Therapy; Vol. 28; No. 4; 11-12; 10.1016/j.ymthe.2020.04.019
• Ortega, Davi R.; Yang, Wen; et el. (2020) Repurposing a chemosensory macromolecular machine; Nature Communications; Vol. 11; Art. No. 2041; PMCID PMC7184735; 10.1038/s41467-020-15736-5
• Oberhofer, Georg; Ivy, Tobin; et el. (2020) Gene drive and resilience through renewal with next generation Cleave and Rescue selfish genetic elements; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 16; 9013-9021; PMCID PMC7183144; 10.1073/pnas.1921698117
• Kaplan, Mohammed; Sweredoski, Michael J.; et el. (2020) Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 16; 8941-8947; PMCID PMC7183148; 10.1073/pnas.1916935117
• Wang, Feng; Li, Shan; et el. (2020) Allosteric p97 inhibitors can overcome resistance to ATP-competitive p97 inhibitors for potential anti-cancer therapy; ChemMedChem; Vol. 15; No. 8; 685-694; PMCID PMC9049325; 10.1002/cmdc.201900722
• Rolando, Justin C.; Jue, Erik; et el. (2020) Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification; Nucleic Acids Research; Vol. 48; No. 7; Art. No. e42; PMCID PMC7144905; 10.1093/nar/gkaa099
• Rauch, Jennifer N.; Luna, Gabriel; et el. (2020) LRP1 is a master regulator of tau uptake and spread; Nature; Vol. 580; No. 7803; 381-385; 10.1038/s41586-020-2156-5
• Chen, Kai and Arnold, Frances H. (2020) Engineering cytochrome P450s for enantioselective cyclopropenation of internal alkynes; Journal of the American Chemical Society; Vol. 142; No. 15; 6891-6895; 10.1021/jacs.0c01313
• Lee, Kyu Hyung; Tran, Alvita; et el. (2020) The sifting of visual information in the superior colliculus; eLife; Vol. 9; Art. No. e50678; 10.7554/elife.50678
• Van Rompay, Koen K. A.; Coffey, Lark L.; et el. (2020) A Combination of Two Human Monoclonal Antibodies Limits Fetal Damage by Zika Virus in Macaques; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 14; 7981-7989; PMCID PMC7149495; 10.1073/pnas.2000414117
• Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Living a Sweet Life: Glucose Instructs Cell Fate in the Mouse Embryo; Developmental Cell; Vol. 53; No. 1; 1-2; 10.1016/j.devcel.2020.03.012
• Goffredi, Shana K.; Tilic, Ekin; et el. (2020) Methanotrophic bacterial symbionts fuel dense populations of deep-sea feather duster worms (Sabellida, Annelida) and extend the spatial influence of methane seepage; Science Advances; Vol. 6; No. 14; Art. No. eaay8562; 10.1126/sciadv.aay8562
• Carter, Stephen D.; Hampton, Cheri M.; et el. (2020) Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells; Science Advances; Vol. 6; No. 14; Art. No. eaay9572; PMCID PMC7112762; 10.1126/sciadv.aay9572
• Lin, Chujun; Keleş, Ümit; et el. (2020) No strong evidence that social network index is associated with gray matter volume from a data-driven investigation; Cortex; Vol. 125; 307-317; PMCID PMC7774327; 10.1016/j.cortex.2020.01.021
• Pu, Haoran; Lim, Jeffrey; et el. (2020) Optimal artifact suppression in simultaneous electrocorticography stimulation and recording for bi-directional brain-computer interface applications; Journal of Neural Engineering; Vol. 17; No. 2; Art. No. 026038; 10.1088/1741-2552/ab82ac
• Yao, Shenqin; Yuan, Peng; et el. (2020) RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations; Nature Methods; Vol. 17; No. 4; 422-429; PMCID PMC7135964; 10.1038/s41592-020-0774-3
• Leu, Andy O.; Cai, Chen; et el. (2020) Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae; ISME Journal; Vol. 14; No. 4; 1030-1041; PMCID PMC7082337; 10.1038/s41396-020-0590-x
• Bar-On, Yinon M.; Flamholz, Avi; et el. (2020) SARS-CoV-2 (COVID-19) by the numbers; eLife; Vol. 9; Art. No. e57309; PMCID PMC7224694; 10.7554/elife.57309
• Schoepp, Nathan G.; Liaw, Eric J.; et el. (2020) Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae; PLoS Biology; Vol. 18; No. 3; Art. No. 3000652; PMCID PMC7081982; 10.1371/journal.pbio.3000652
• Savela, Emily S.; Schoepp, Nathan G.; et el. (2020) Surfactant-enhanced DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic susceptibility testing of Neisseria gonorrhoeae; PLoS Biology; Vol. 18; No. 3; Art. No. 3000651; PMCID PMC7081974; 10.1371/journal.pbio.3000651
• Arnaboldi, Valerio; Raciti, Daniela; et el. (2020) Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase; Database : The Journal of Biological Databases and Curation; Vol. 2020; Art. No. baaa006; PMCID PMC7078066; 10.1093/database/baaa006
• Inglis, Alison J.; Page, Katharine R.; et el. (2020) Differential modes of orphan subunit recognition for the WRB/CAML complex; Cell Reports; Vol. 30; No. 11; 3691-3698; PMCID PMC7147533; 10.1016/j.celrep.2020.02.084
• Quinn, Robert A.; Melnik, Alexey V.; et el. (2020) Global chemical effects of the microbiome include new bile-acid conjugations; Nature; Vol. 579; No. 7797; 123-129; 10.1038/s41586-020-2047-9
• Flyak, Andrew I.; Ruiz, Stormy E.; et el. (2020) An ultralong CDRH2 in HCV neutralizing antibody demonstrates structural plasticity of antibodies against E2 glycoprotein; eLife; Vol. 9; Art. No. e53169; PMCID PMC7064334; 10.7554/elife.53169
• Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Nonequilibrium thermodynamics of erasure with superconducting flux logic; Physical Review Research; Vol. 2; No. 1; Art. No. 013249; 10.1103/PhysRevResearch.2.013249
• El-Nachef, Wael and Bronner, Marianne (2020) De novo neurogenesis in the post-embryonic zebrafish enteric nervous system from Schwann cell precursors rather than resident cell types; Neurogastroenterology and Motility; Vol. 32; No. S1; Art. No. 29; 10.1111/nmo.13817
• Wagner, J. M. and Parker, J. (2020) Chemical Cues Underly an Interspecies Symbiosis by Triggering a Modular Social-Behavioral Program; Integrative and Comparative Biology; Vol. 60; No. S1; E244; 10.1093/icb/icaa006
• Kishi, Y.; Bruckner, A.; et el. (2020) Hox-logic of Rove Beetle Chemical Weaponry; Integrative and Comparative Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
• Naragon, T. H.; Brückner, A. K.; et el. (2020) Cuticular hydrocarbons and the integration of myrmecophile rove beetles into ant colonies; Integrative and Comparative Biology; Vol. 60; No. S1; E170; 10.1093/icb/icaa006
• Behbahani, A. H.; Rak, A. K.; et el. (2020) Flies Remember Multiple Food Locations in the Absence of External Cues; Integrative and Comparative Biology; Vol. 60; No. S1; E15; 10.1093/icb/icaa006
• Kitchen, S. A.; Bruckner, A.; et el. (2020) Genomic insights into gland development of rove beetles; Integrative and Comparative Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
• Yousefelahiyeh, M.; Miller, D. R.; et el. (2020) Dalotia coriaria as a genetic model system of animal symbiosis; Integrative and Comparative Biology; Vol. 60; No. S1; E452; 10.1093/icb/icaa007
• Mehrotra, Pihu; Tseropoulos, Georgios; et el. (2020) Adult tissue-derived neural crest‐like stem cells: Sources, regulatory networks, and translational potential: Concise review; Stem Cells Translational Medicine; Vol. 9; No. 3; 328-341; 10.1002/sctm.19-0173
• Zhang, Carey Y.; Aflalo, Tyson; et el. (2020) Preservation of partially mixed selectivity in human posterior parietal cortex across changes in task context; eNeuro; Vol. 7; No. 2; Art. No. 0222-19.2019; PMCID PMC7070450; 10.1523/eneuro.0222-19.2019
• Challis, Collin; Hori, Acacia; et el. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged mice; Nature Neuroscience; Vol. 23; No. 3; 327-336; PMCID PMC7065967; 10.1038/s41593-020-0589-7
• Chen, Kai and Arnold, Frances H. (2020) Engineering new catalytic activities in enzymes; Nature Catalysis; Vol. 3; No. 3; 203-213; 10.1038/s41929-019-0385-5
• Brueckner, A. and Parker, J. (2020) Single Cell Assembly of a Chemical Key Innovation in a Rove Beetle; Integrative and Comparative Biology; Vol. 60; No. S1; E25; 10.1093/icb/icaa006
• Haas, Kalina T.; Wightman, Raymond; et el. (2020) Pectin homogalacturonan nanofilament expansion drives morphogenesis in plant epidermal cells; Science; Vol. 367; No. 6481; 1003-1007; PMCID PMC7932746; 10.1126/science.aaz5103
• Basta, David W.; Angeles-Albores, David; et el. (2020) Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 8; 4358-4367; PMCID PMC7049150; 10.1073/pnas.1912082117
• Milham, Michael; Petkov, Christopher I.; et el. (2020) Accelerating the Evolution of Nonhuman Primate Neuroimaging; Neuron; Vol. 105; No. 4; 600-603; PMCID PMC7610430; 10.1016/j.neuron.2019.12.023
• Gorin, Gennady; Svensson, Valentine; et el. (2020) RNA velocity and protein acceleration from single-cell multiomics experiments; Genome Biology; Vol. 21; Art. No. 39; PMCID PMC7029606; 10.1186/s13059-020-1945-3
• Olina, Anna; Kuzmenko, Anton; et el. (2020) Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus; RNA Biology; Vol. 17; No. 5; 677-688; PMCID PMC7237159; 10.1080/15476286.2020.1724716
• Bogatyrev, Said R.; Rolando, Justin C.; et el. (2020) Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine; Microbiome; Vol. 8; Art. No. 19; PMCID PMC7017497; 10.1186/s40168-020-0785-4
• Sampson, Timothy R.; Challis, Collin; et el. (2020) A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice; eLife; Vol. 9; Art. No. e53111; PMCID PMC7012599; 10.7554/elife.53111
• Grant, Stephen; Muthusamy, Anand K.; et el. (2020) Antagonists Pharmacologically Chaperone Opioid Receptors; Biophysical Journal; Vol. 118; No. 3; 27a; 10.1016/j.bpj.2019.11.328
• Salmon, Gabe and Phillips, Rob (2020) Modeling Microbial Interactions across Nutritional Environments using Maximum Entropy; Biophysical Journal; Vol. 118; No. 3; 347a; 10.1016/j.bpj.2019.11.2004
• McCarty, Nicholas S.; Razo-Mejia, Manuel; et el. (2020) Genetic Barcodes Enable Quantitative Mapping of Operator Mutants to Gene Expression; Biophysical Journal; Vol. 118; No. 3; 611a; 10.1016/j.bpj.2019.11.3298
• Metskas, Lauren Ann; Ho, Samuel; et el. (2020) The Effect of Cryo Temperature on Commonly used Fluorophores; Biophysical Journal; Vol. 118; No. 3; 150a-151a; 10.1016/j.bpj.2019.11.942
• Galstyan, Vahe; Husain, Kabir; et el. (2020) Kinetic Proofreading using Substrate Gradients and Enzyme Diffusion; Biophysical Journal; Vol. 118; No. 3; 573a-574a; 10.1016/j.bpj.2019.11.3118
• Banks, Rachel; Lee, Heun Jin; et el. (2020) Bridging Kinesin Properties with System-scale Characteristics of Microtubule-Motor Assemblies; Biophysical Journal; Vol. 118; No. 3; 176a-177a; 10.1016/j.bpj.2019.11.1081
• Phillips, Rob (2020) Schrodinger’s “What is Life” At 75: The Physical Aspects of the Living Cell Revisited; Biophysical Journal; Vol. 118; No. 3; 2a; 10.1016/j.bpj.2019.11.204
• Weaver, Sara J.; Sazinsky, Matthew H.; et el. (2020) CryoEM Structure of the Vibrio cholerae Type IV Pilus Secretin PilQ; Biophysical Journal; Vol. 118; No. 3; 12a; 10.1016/j.bpj.2019.11.247
• Chure, Griffin and Phillips, Rob (2020) The Molecular Biophysics of Adaptation; Biophysical Journal; Vol. 118; No. 3; 545a; 10.1016/j.bpj.2019.11.2983
• Schommers, Philipp; Gruell, Henning; et el. (2020) Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody; Cell; Vol. 180; No. 3; 471-489; PMCID PMC7042716; 10.1016/j.cell.2020.01.010
• Ninova, Maria; Chen, Yung-Chia Ariel; et el. (2020) Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing; Molecular Cell; Vol. 77; No. 3; 556-570; PMCID PMC7007863; 10.1016/j.molcel.2019.11.012
• Ninova, Maria; Godneeva, Baira; et el. (2020) The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation; Molecular Cell; Vol. 77; No. 3; 571-585; PMCID PMC7007874; 10.1016/j.molcel.2019.09.033
• Jue, Erik; Witters, Daan; et el. (2020) Two-phase wash to solve the ubiquitous contaminant-carryover problem in commercial nucleic-acid extraction kits; Scientific Reports; Vol. 10; Art. No. 1940; PMCID PMC7004994; 10.1038/s41598-020-58586-3
• Chen, Shun-Jia; Melnykov, Artem; et el. (2020) Evolution of Substrates and Components of the Pro/N-Degron Pathway; Biochemistry; Vol. 59; No. 4; 582-593; PMCID PMC7286083; 10.1021/acs.biochem.9b00953
• Brückner, Adrian and Parker, Joseph (2020) Molecular evolution of gland cell types and chemical interactions in animals; Journal of Experimental Biology; Vol. 223; No. Suppl 1; Art. No. 223; 10.1242/jeb.211938
• Frankiw, Luke; Mann, Mati; et el. (2020) Alternative Splicing Coupled with Transcript Degradation Modulates OAS1g Antiviral Activity; RNA; Vol. 26; No. 2; 126-136; PMCID PMC6961538; 10.1261/rna.073825.119
• Ueda, Hiroki R.; Ertürk, Ali; et el. (2020) Tissue clearing and its applications in neuroscience; Nature Reviews. Neuroscience; Vol. 21; No. 2; 61-79; PMCID PMC8121164; 10.1038/s41583-019-0250-1
• Glover, David M. (2020) Open Biology in a new decade; Open Biology; Vol. 10; No. 2; Art. No. 200025; PMCID PMC7058933; 10.1098/rsob.200025
• Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Building an apical domain in the early mouse embryo: Lessons, challenges and perspectives; Current Opinion in Cell Biology; Vol. 62; 144-149; 10.1016/j.ceb.2019.11.005
• Bjorkman, Pamela J. (2020) Can we use structural knowledge to design a protective vaccine against HIV-1?; HLA; Vol. 95; No. 2; 95-103; 10.1111/tan.13759
• Dickinson, Michael H.; Vosshall, Leslie B.; et el. (2020) Genome editing in non-model organisms opens new horizons for comparative physiology; Journal of Experimental Biology; Vol. 223; No. Suppl 1; 1; 10.1242/jeb.221119
• Jung, Yonil; Kennedy, Ann; et el. (2020) Neurons that Function within an Integrator to Promote a Persistent Behavioral State in Drosophila; Neuron; Vol. 105; No. 2; 322-333; PMCID PMC6981076; 10.1016/j.neuron.2019.10.028
• Su, Yu-Lin; Wang, Xiuli; et el. (2020) Myeloid Cell-Targeted miR-146a Mimic Inhibits NF-kB-Driven Inflammation and Leukemia Progression in Vivo; Blood; Vol. 135; No. 3; 167-180; PMCID PMC6966933; 10.1182/blood.2019002045
• Mastro, Tara L.; Preza, Anthony; et el. (2020) A sex difference in the response of the rodent postsynaptic density to synGAP haploinsufficiency; eLife; Vol. 9; Art. No. e52656; PMCID PMC6994236; 10.7554/elife.52656
• Watkins, Ella J.; Almhjell, Patrick J.; et el. (2020) Direct enzymatic synthesis of a deep-blue fluorescent noncanonical amino acid from azulene and serine; ChemBioChem; Vol. 21; No. 1-2; 80-83; PMCID PMC6980211; 10.1002/cbic.201900497
• Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Modification of electron-phonon coupling by micromachining and suspension; Journal of Applied Physics; Vol. 127; No. 2; Art. No. 024307; 10.1063/1.5132948
• Zheng, Li; Meng, Yuan; et el. (2020) Multiple roles of DNA2 nuclease/helicase in DNA metabolism, genome stability and human diseases; Nucleic Acids Research; Vol. 48; No. 1; 16-35; PMCID PMC6943134; 10.1093/nar/gkz1101
• Augustine, Vineet; Lee, Sangjun; et el. (2020) Neural Control and Modulation of Thirst, Sodium Appetite, and Hunger; Cell; Vol. 180; No. 1; 25-32; PMCID PMC7406138; 10.1016/j.cell.2019.11.040
• Agapite, Julie; Albou, Laurent-Philippe; et el. (2020) Alliance of Genome Resources Portal: unified model organism research platform; Nucleic Acids Research; Vol. 48; No. D1; D650-D658; PMCID PMC6943066; 10.1093/nar/gkz813
• Harris, Todd W.; Arnaboldi, Valerio; et el. (2020) WormBase: a modern Model Organism Information Resource; Nucleic Acids Research; Vol. 48; No. D1; D762-D767; PMCID PMC7145598; 10.1093/nar/gkz920
• Hosokawa, Hiroyuki; Romero-Wolf, Maile; et el. (2020) Cell type–specific actions of Bcl11b in early T-lineage and group 2 innate lymphoid cells; Journal of Experimental Medicine; Vol. 217; No. 1; Art. No. e20190972; PMCID PMC7037248; 10.1084/jem.20190972
• Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2020) Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure; Journal of Proteome Research; Vol. 19; No. 1; 36-48; PMCID PMC7289315; 10.1021/acs.jproteome.9b00286
• Przepiorski, Aneta; Sander, Veronika; et el. (2018) A Simple Bioreactor-Based Method to Generate Kidney Organoids from Pluripotent Stem Cells; Stem Cell Reports; Vol. 11; No. 2; 470-484; 10.1016/j.stemcr.2018.06.018
• Bergkessel, Megan; Basta, David W.; et el. (2016) The physiology of growth arrest: uniting molecular and environmental microbiology; Nature Reviews Microbiology; Vol. 14; No. 9; 549-562; PMCID PMC10069271; 10.1038/nrmicro.2016.107
• Liu, Cambrian Y.; Xiao, Cheng; et el. (2012) Electrophysiological characterization of Grueneberg ganglion olfactory neurons: spontaneous firing, sodium conductance, and hyperpolarization-activated currents; Journal of Neurophysiology; Vol. 108; No. 5; 1318-1334; 10.1152/jn.00907.2011
• Dickinson, Mary E.; Selleck, Mark A. J.; et el. (1995) Dorsalization of the neural tube by the non-neural ectoderm; Development; Vol. 121; No. 7; 2099-2106
• Flytzanis, Constantin N.; McMahon, Andrew P.; et el. (1985) Persistence and Integration of Cloned DNA in Postembryonic Sea Urchins; Developmental Biology; Vol. 108; No. 2; 431-442; 10.1016/0012-1606(85)90046-6
• McMahon, Andrew P.; Flytzanis, Constantin N.; et el. (1985) Introduction of Cloned DNA into Sea Urchin Egg Cytoplasm: Replication and Persistence during Embryogenesis; Developmental Biology; Vol. 108; No. 2; 420-430; 10.1016/0012-1606(85)90045-4
• McMahon, A. P.; Novak, T. J.; et el. (1984) Inducible expression of a cloned heat shock fusion gene in sea urchin embryos; Proceedings of the National Academy of Sciences of the United States of America; Vol. 81; No. 23; 7490-7494; PMCID PMC392172