Division of Biology and Biological Engineering (BBE)

(BBE)

Book

Sections from CaltechAUTHORS

• Graebener, Josefine B.; Incer, Inigo; et al. (2025) A Compositional Approach to Diagnosing Faults in Cyber-Physical Systems; ISBN 978-3-032-05434-0; Runtime Verification; Springer Nature Switzerland; Lecture Notes in Computer Science; Vol. 16087; 438-456; 10.1007/978-3-032-05435-7_24
• Morais, Livia H.; de Castro Fonseca, Matheus; et al. (2025) The gut microbiome in animal models of Parkinson’s disease; ISBN 9780443135507; Integrative Omics in Parkinson’s Disease; Academic Press: Amsterdam; 153-169; 10.1016/b978-0-443-13550-7.00010-0
• Schweikert, Christina; Shimojo, Shinsuke; et al. (2022) Modeling Prototypical Preference Behavior and Diversity using Rank Score Characteristic Functions; ISBN 978-1-6654-9084-9; 2022 IEEE 21st International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC); IEEE: Piscataway, NJ; 203-207; 10.1109/iccicc57084.2022.10101519
• Graebener, Josefine B.; Badithela, Apurva; et al. (2022) Towards Better Test Coverage: Merging Unit Tests for Autonomous Systems; ISBN 9783031067723; NASA Formal Methods: 14th International Symposium, NFM 2022, Pasadena, CA, USA, May 24–27, 2022, Proceedings; Springer: Cham; 133-155; 10.1007/978-3-031-06773-0_7
• Endo, Yoshitaka; Shimojo, Shinsuke; et al. (2022) Investigation of influence of loss function weights of cycle-consistent adversarial networks on generation of pareidolia stimuli; ISBN 9781510653313; International Workshop on Advanced Imaging Technology (IWAIT) 2022; Society of Photo-Optical Instrumentation Engineers: Bellingham, WA; Art. No. 121773I; 10.1117/12.2625964
• Athavale, Soumitra V.; Chen, Kai; et al. (2021) Engineering Enzymes for New‐to‐Nature Carbene Chemistry; ISBN 9783527347995; Transition Metal-Catalyzed Carbene Transformations; Wiley: Weinheim; 95-138; 10.1002/9783527829170.ch4
• Badithela, Apurva; Wongpiromsarn, Tichakorn; et al. (2021) Leveraging Classification Metrics for Quantitative System-Level Analysis with Temporal Logic Specifications; ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ; 564-571; 10.1109/cdc45484.2021.9683611
• Rosolia, Ugo; Ahmadi, Mohamadreza; et al. (2021) Time-Optimal Navigation in Uncertain Environments with High-Level Specifications; ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ; 4287-4294; 10.1109/CDC45484.2021.9683486
• Pandey, Ayush and Murray, Richard M. (2021) Robustness Guarantees for Structured Model Reduction of Dynamical Systems; ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ; 6920-6927; 10.1109/cdc45484.2021.9683298
• Schweikert, Christina; Shimojo, Shinsuke; et al. (2021) Improving Preference Detection with Eye Movement Gaze and Cognitive Diversity; ISBN 978-1-6654-2119-5; 2021 IEEE 20th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC); IEEE: Piscataway, NJ; 98-102; 10.1109/iccicc53683.2021.9811298
• Hsu, D. Frank; Shehata, Mohammad; et al. (2021) Human Cognition and Hyper Intelligence; ISBN 978-1-6654-2174-4; 2021 IEEE Intl Conf on Dependable, Autonomic and Secure Computing, Intl Conf on Pervasive Intelligence and Computing, Intl Conf on Cloud and Big Data Computing, Intl Conf on Cyber Science and Technology Congress (DASC/PiCom/CBDCom/CyberSciTech); IEEE: Piscataway, NJ; 775-781; 10.1109/dasc-picom-cbdcom-cyberscitech52372.2021.00127
• Bagherian, Dawna; Gornet, James; et al. (2021) Fine-Grained System Identification of Nonlinear Neural Circuits; ISBN 978-1-4503-8332-5; Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining; Association for Computing Machinery: New York, NY; 14-24; 10.1145/3447548.3467402
• Mayalu, Michaëlle N.; Sarma, Anish; et al. (2021) Systems Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain Axis; ISBN 978-9-4638-4236-5; 2021 European Control Conference (ECC); IEEE: Piscataway, NJ; 312-318; 10.23919/ecc54610.2021.9655216
• Phan-Minh, Tung and Murray, Richard M. (2021) Contracts of Reactivity; ISBN 978-9-4638-4236-5; 2021 European Control Conference (ECC); IEEE: Piscataway, NJ; 2611-2618; 10.23919/ECC54610.2021.9654932
• Sun, Jennifer J.; Kennedy, Ann; et al. (2021) Task Programming: Learning Data Efficient Behavior Representations; ISBN 978-1-6654-4509-2; 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR); IEEE: Piscataway, NJ; 2875-2884; 10.1109/CVPR46437.2021.00290
• Cheng, Richard; Murray, Richard M.; et al. (2021) Limits of Probabilistic Safety Guarantees when Considering Human Uncertainty; ISBN 978-1-7281-9077-8; 2021 IEEE International Conference on Robotics and Automation (ICRA); IEEE: Piscataway, NJ; 3182-3189; 10.1109/ICRA48506.2021.9561843
• Ahmadi, Mohamadreza; Rosolia, Ugo; et al. (2021) Constrained Risk-Averse Markov Decision Processes; 10.48550/arXiv.2012.02423
• Kasahara, Shunichi; Takada, Kazuma; et al. (2021) Preserving Agency During Electrical Muscle Stimulation Training Speeds up Reaction Time Directly After Removing EMS; ISBN 978-1-4503-8096-6; Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems; Association for Computing Machinery: New York, NY; Art. No. 194; 10.1145/3411764.3445147
• Ren, Xinying; Cuba Samaniego, Christian; et al. (2021) Bistable State Switch Enables Ultrasensitive Feedback Control in Heterogeneous Microbial Populations; ISBN 978-1-6654-4197-1; 2021 American Control Conference (ACC); IEEE: Piscataway, NJ; 652-659; 10.23919/ACC50511.2021.9482836
• Chen, Fu-Der; Jung, Youngho; et al. (2021) Sidelobe-Free Beam-Steering using Optical Phased Arrays for Neural Probes; ISBN 978-1-943580-91-0; 2021 Conference on Lasers and Electro-Optics (CLEO); Optical Society of America: Washington, DC; Art. No. SW3B.2; 10.1364/cleo_si.2021.sw3b.2
• Stundl, Jan; Bertucci, Paola Y.; et al. (2021) Evolution of new cell types at the lateral neural border; ISBN 9780128149683; Evolutionary Developmental Biology; Elsevier: Cambridge, MA; 173-205; 10.1016/bs.ctdb.2020.11.005
• Kaplan, Mohammed; Nicolas, William J.; et al. (2020) In Situ Imaging and Structure Determination of Biomolecular Complexes Using Electron Cryo-Tomography; ISBN 978-1-0716-0965-1; cryoEM: Methods and Protocols; Humana Press: New York, NY; 83-111; 10.1007/978-1-0716-0966-8_4
• Akella, Prithvi; Ahmadi, Mohamadreza; et al. (2020) Formal Test Synthesis for Safety-Critical Autonomous Systems based on Control Barrier Functions; ISBN 9781728174471; 2020 59th IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ; 790-795; 10.1109/CDC42340.2020.9303776
• Huang, Yujia; Gornet, James; et al. (2020) Neural Networks with Recurrent Generative Feedback; 10.48550/arXiv.2007.09200
• Bernstein, Jeremy; Zhao, Jiawei; et al. (2020) Learning compositional functions via multiplicative weight updates; 10.48550/arXiv.2006.14560
• Hutchins, Erica J. and Bronner, Marianne E. (2020) A Spectrum of Cell States During the Epithelial-to-Mesenchymal Transition; ISBN 978-1-0716-0778-7; The Epithelial-to Mesenchymal Transition: Methods and Protocols; Humana Press: New York, NY; 3-6; 10.1007/978-1-0716-0779-4_1
• Baldini, Francesca; Anandkumar, Animashree; et al. (2020) Learning Pose Estimation for UAV Autonomous Navigation and Landing Using Visual-Inertial Sensor Data; ISBN 9781538682661; 2020 American Control Conference (ACC); IEEE: Piscataway, NJ; 2961-2966; 10.23919/ACC45564.2020.9147400
• Doeser, Ludvig; Nilsson, Petter; et al. (2020) Invariant Sets for Integrators and Quadrotor Obstacle Avoidance; ISBN 9781538682661; 2020 American Control Conference (ACC); IEEE: Piscataway, NJ; 3814-3821; 10.23919/acc45564.2020.9147872
• Serrano-Amenos, Claudia; Hu, Frank; et al. (2020) Thermal Analysis of a Skull Implant in Brain-Computer Interfaces; ISBN 9781728119908; 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC); IEEE: Piscataway, NJ; 3066-3069; 10.1109/embc44109.2020.9175483
• Sohn, Won J.; Wang, Po T.; et al. (2020) A Prototype of a Fully-Implantable Charge-Balanced Artificial Sensory Stimulator for Bi-directional Brain-Computer-Interface (BD-BCI); ISBN 9781728119908; 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC); IEEE: Piscataway, NJ; 3082-3085; 10.1109/embc44109.2020.9176718
• Ahmadi, Mohamadreza; Ono, Masahiro; et al. (2020) Risk-Averse Planning Under Uncertainty; ISBN 9781538682661; 2020 American Control Conference (ACC); IEEE: Piscataway, NJ; 3305-3312; 10.23919/ACC45564.2020.9147792
• Schwarzkopf, Maayan; Choi, Harry M. T.; et al. (2020) Multiplexed Quantitative In Situ Hybridization for Mammalian Cells on a Slide: qHCR and dHCR Imaging (v3.0); ISBN 978-1-0716-0622-3; In Situ Hybridization Protocols; Humana Press: New York, NY; 143-156; 10.1007/978-1-0716-0623-0_9
• Schwarzkopf, Maayan; Choi, Harry M. T.; et al. (2020) Multiplexed Quantitative In Situ Hybridization for Mammalian or Bacterial Cells in Suspension: qHCR Flow Cytometry (v3.0); ISBN 978-1-0716-0622-3; In Situ Hybridization Protocols; Humana Press: New York, NY; 127-141; 10.1007/978-1-0716-0623-0_8
• Choi, Harry M. T.; Schwarzkopf, Maayan; et al. (2020) Multiplexed Quantitative In Situ Hybridization with Subcellular or Single-Molecule Resolution Within Whole-Mount Vertebrate Embryos: qHCR and dHCR Imaging (v3.0); ISBN 978-1-0716-0622-3; In Situ Hybridization Protocols; Humana Press: New York, NY; 159-178; 10.1007/978-1-0716-0623-0_10
• Guerrero Peña, Fidel A.; Marrero Fernandez, Pedro D.; et al. (2020) J Regularization Improves Imbalanced Multiclass Segmentation; ISBN 9781538693308; 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI); IEEE: Piscataway, NJ; 948-952; 10.1109/isbi45749.2020.9098550
• Klaesson, Filip; Nilsson, Petter; et al. (2020) Intermittent Connectivity for Exploration in Communication-Constrained Multi-Agent Systems; 10.1109/ICCPS48487.2020.00031
• Beery, Sara; Liu, Yang; et al. (2020) Synthetic Examples Improve Generalization for Rare Classes; ISBN 978-1-7281-6553-0; 2020 IEEE Winter Conference on Applications of Computer Vision (WACV); IEEE: Piscataway, NJ; 852-862; 10.1109/WACV45572.2020.9093570
• Ma, Guangxu; Wang, Tao; et al. (2020) Elucidating the molecular and developmental biology of parasitic nematodes: Moving to a multiomics paradigm; ISBN 978-0-12-820750-5; Giardia and Giardiasis, Part A; Academic Press: London; 175-229; 10.1016/bs.apar.2019.12.005
• Desai, Amish; Bökenkamp, Dirk; et al. (1997) Microfluidic sub-millisecond mixers for the study of chemical reaction kinetics; ISBN 0-7803-3829-4; Transducers ’97: Digest of Technical Papers; IEEE: Piscataway, NJ; 167-170; 10.1109/SENSOR.1997.613609
• Moore, Andrew; Allman, John; et al. (1991) A VLSI Neural Network for Color Constancy; ISBN 1-55860-184-8; Advances in Neural Information Processing Systems 3; Morgan Kaufmann: San Mateo, CA; 370-376