(““)
https://www.bbe.caltech.edu/
- Swartwood, Brea (2025) Stability
analysis of traveling wave fronts in a model for tumor growth;
Nonlinear Analysis: Real World Applications; Vol. 81; 104176; 10.1016/j.nonrwa.2024.104176
- Sakai, Alexandra; Singh, Gagandeep; et el. (2024) Inhibition
of SARS-CoV-2 growth in the lungs of mice by a peptide-conjugated
morpholino oligomer targeting viral RNA; Moleclar Therapy - Nucleic
Acids; Vol. 35; No. 4; 102331; 10.1016/j.omtn.2024.102331
- Squyres, Georgia R and Newman, Dianne (2024) Biofilms
as more than the sum of their parts: lessons from developmental
biology; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
- Hadas, Ron; Rubinstein, Hernan; et el. (2024) Temporal
BMP4 effects on mouse embryonic and extraembryonic development;
Nature; Vol. 634; 652–661; 10.1038/s41586-024-07937-5
- Shin, Boyoung; Chang, Samantha J.; et el. (2024) Transcriptional
network dynamics in early T cell development; Journal of
Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
- Huang, Buwei; Abedi, Mohamad; et el. (2024) Designed
endocytosis-inducing proteins degrade targets and amplify signals;
Nature; No. 8031; 10.1038/s41586-024-07948-2
- Varshavsky, Alexander (2024) N-degron
pathways; Proceedings of the National Academy of Sciences; Vol. 121;
No. 39; e2408697121; 10.1073/pnas.2408697121
- Agrawal, Parul; Knudsen, Maria L.; et el. (2024) Short
CDRL1 in intermediate VRC01-like mAbs is not sufficient to overcome key
glycan barriers on HIV-1 Env; Journal of Virology; 10.1128/jvi.00744-24
- Polonsky, Michal; Gerhardt, Louisa M. S.; et el. (2024) Spatial
transcriptomics defines injury specific microenvironments and cellular
interactions in kidney regeneration and disease; Nature
Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
- Coppinger, Macey; Liu, Yang; et el. (2024) Transient
infection of Euprymna scolopes with an engineered D-alanine auxotroph of
Vibrio fischeri; Applied and Environmental Microbiology; e01298-24;
10.1128/aem.01298-24
- Flamholz, Avi I.; Goldford, Joshua E.; et el. (2024) Annotation-free
prediction of microbial dioxygen utilization; mSystems; e00763-24;
10.1128/msystems.00763-24
- Der, Balint; Bugacov, Helena; et el. (2024) Cadherin
Adhesion Complexes Direct Cell Aggregation in the Epithelial Transition
of Wnt-Induced Nephron Progenitor Cells; Development; Vol. 151;
No. 18; dev202303; 10.1242/dev.202303
- Bugacov, Helena; Der, Balint; et el. (2024) Dose-dependent
responses to canonical Wnt transcriptional complexes in the regulation
of mammalian nephron progenitors; Development; Vol. 151; No. 18;
dev202279; 10.1242/dev.202279
- Niu, Xubo; Melendez, Delmy L.; et el. (2024) A
conserved transcription factor regulatory program promotes tendon
fate; Developmental Cell; Vol. 59; 1-18; 10.1016/j.devcel.2024.08.006
- Zhang, Oumeng; Alcalde, Reinaldo E.; et el. (2024) Investigating
3D microbial community dynamics of the rhizosphere using quantitative
phase and fluorescence microscopy; Proceedings of the National
Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
- Kim, Sunghyun; Koppitch, Kari; et el. (2024) Comparative
single-cell analyses identify shared and divergent features of human and
mouse kidney development; Developmental Cell; 10.1016/j.devcel.2024.07.013
- Dong, Zhenyu; Mahler, Simon; et el. (2024) Non-invasive
laser speckle contrast imaging (LSCI) of extra-embryonic blood vessels
in intact avian eggs at early developmental stages; Biomedical
Optics Express; Vol. 15; No. 8; 4605-4624; 10.1364/boe.530366
- Bartol, Thomas M.; Ordyan, Mariam; et el. (2024) A spatial
model of autophosphorylation of Ca²⁺/calmodulin-dependent protein kinase
II in a glutamatergic spine reveals dynamics of kinase activation in the
first several seconds after a complex synaptic stimulus; 10.1101/2024.02.02.578696
- Garibyan, Mher; Hoffman, Tyler; et el. (2024) Engineering
programmable material-to-cell pathways via synthetic notch receptors to
spatially control differentiation in multicellular constructs;
Nature Communications; Vol. 15; 5891; PMCID PMC11246427; 10.1038/s41467-024-50126-1
- Kitchen, Sheila A.; Naragon, Thomas H.; et el. (2024) The
genomic and cellular basis of biosynthetic innovation in rove
beetles; Cell; Vol. 187; No. 14; 1-22; 10.1016/j.cell.2024.05.012
- Treidel, Lisa A.; Deem, Kevin D.; et el. (2024) Insect
Flight: State of the Field and Future Directions; Integrative And
Comparative Biology; icae106; 10.1093/icb/icae106
- Hanley, Deirdre; Li, Zi-Qi; et el. (2024) Stereospecific
Enzymatic Conversion of Boronic Acids to Amines; Journal of the
American Chemical Society; 10.1021/jacs.4c04190
- Yin, Siyuan; Cao, Ruizhi; et el. (2024) Can deep
neural networks work with amplitude and phase input of defocused
images?; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
- Tseropoulos, Georgios; Mehrotra, Pihu; et el. (2024) Immobilized
NRG1 Accelerates Neural Crest like Cell Differentiation Toward
Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ
Nuclear Translocation; Advanced Science; 2402607; 10.1002/advs.202402607
- Zhang, Oumeng; Dahlquist, Nic; et el. (2024) Long-term
imaging of three-dimensional hyphal development using the ePetri
dish; Biomedical Optics Express; Vol. 15; No. 7; 4292-4299; 10.1364/boe.530483
- Lamorie-Foote, Krista; Kramer, Daniel R.; et el. (2024) Primary
somatosensory cortex organization for engineering artificial
somatosensation; Neuroscience Research; Vol. 204; 1-13; 10.1016/j.neures.2024.01.005
- Azevedo, Anthony; Lesser, Ellen; et el. (2024) Connectomic
reconstruction of a female Drosophila ventral nerve cord; Nature; 10.1038/s41586-024-07389-x
- Lesser, Ellen; Azevedo, Anthony W.; et el. (2024) Synaptic
architecture of leg and wing premotor control networks in
Drosophila; Nature; 10.1038/s41586-024-07600-z
- Cervantes Rincón, Tomás; Kapoor, Tania; et el. (2024) Human
antibodies in Mexico and Brazil neutralizing tick-borne
flaviviruses; Cell Reports; Vol. 43; No. 6; 114298; 10.1016/j.celrep.2024.114298
- Han, Yanting and Adolphs, Ralph (2024) A shared
structure for emotion experiences from narratives, videos and everyday
life; iScience; 110378; 10.1016/j.isci.2024.110378
- Sperling, Alexis L.; Fabian, Daniel K.; et el. (2024) Protocol
for preparing Drosophila genomic DNA to create chromosome-level de novo
genome assemblies; STAR Protocols; Vol. 5; No. 2; 102974; PMCID
PMC11002874; 10.1016/j.xpro.2024.102974
- Tan, Chieh-Hsiang; Wang, Ting-Yu; et el. (2024) Single-tissue
proteomics in Caenorhabditis elegans reveals proteins resident in
intestinal lysosome-related organelles; Proceedings of the National
Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
- Wang, Renée Z.; Lonergan, Zachery R.; et el. (2024) Widespread
detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O
under anoxia; Proceedings of the National Academy of Sciences; Vol.
121; No. 25; e2319960121; 10.1073/pnas.2319960121
- Oberhofer, Georg; Johnson, Michelle L.; et el. (2024) Cleave
and Rescue gamete killers create conditions for gene drive in
plants; Nature Plants; 10.1038/s41477-024-01701-3
- Chen, Peiwei; Pan, Katherine C.; et el. (2024) Escalation
of genome defense capacity enables control of an expanding meiotic
driver; PMCID PMC11195268; 10.1101/2024.06.12.598716
- Sullivan, Delaney K. and Pachter, Lior (2024) Flexible
parsing, interpretation, and editing of technical sequences with
splitcode; Bioinformatics; Vol. 40; No. 6; btae331; PMCID
PMC11193061; 10.1093/bioinformatics/btae331
- Zernicka-Goetz, Magdalena and Hyun, Insoo (2024) Embryo
models need consistent ethical oversight; Nature; Vol. 630;
No. 8016; 305; 10.1038/d41586-024-01728-8
- Dorff, Tanya B.; Blanchard, M. Suzette; et el. (2024) PSCA-CAR
T cell therapy in metastatic castration-resistant prostate cancer: a
phase 1 trial; Nature Medicine; 10.1038/s41591-024-02979-8
- Pardo-Palacios, Francisco J.; Wang, Dingjie; et el. (2024) Systematic
assessment of long-read RNA-seq methods for transcript identification
and quantification; Nature Methods; 10.1038/s41592-024-02298-3
- Huang, Biao; Zeng, Zipeng; et el. (2024) Long-term
expandable mouse and human-induced nephron progenitor cells enable
kidney organoid maturation and modeling of plasticity and disease;
Cell Stem Cell; Vol. 31; No. 6; 921-939.e17; 10.1016/j.stem.2024.04.002
- Huycke, Tyler R.; Häkkinen, Teemu J.; et el. (2024) Patterning
and folding of intestinal villi by active mesenchymal dewetting;
Cell; Vol. 187; No. 12; 3072-3089.e20; 10.1016/j.cell.2024.04.039
- Pang, Marion; Jones, Jeff J.; et el. (2024) Increasing
Proteome Coverage Through a Reduction in Analyte Complexity in
Single-Cell Equivalent Samples; Journal of Proteome Research; 10.1021/acs.jproteome.4c00062
- Cao, Ruizhi; Shen, Cheng; et el. (2024) High-resolution,
large field-of-view label-free imaging via aberration-corrected,
closed-form complex field reconstruction; Nature Communications;
Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
- Sierra, Noemie; Olsman, Noah; et el. (2024) A novel
approach to comparative RNA-Seq does not support a conserved set of
orthologs underlying animal regeneration; Genome Biology and
Evolution; Vol. 16; No. 6; evae120; PMCID PMC11214158; 10.1093/gbe/evae120
- Yang, Liu; Lawhorn, Susannah; et el. (2024) Bacterial
growth dynamics in a rhythmic symbiosis; Molecular Biology of the
Cell; Vol. 35; No. 6; ar79; 10.1091/mbc.e24-01-0044
- Lo, Yu-Li; Li, Ching-Yao; et el. (2024) Exploring
in vivo combinatorial chemo-immunotherapy: Addressing p97 suppression
and immune reinvigoration in pancreatic cancer with tumor
microenvironment-responsive nanoformulation; Biomedicine &
Pharmacotherapy; Vol. 175; 116660; 10.1016/j.biopha.2024.116660
- Rangone, Hélène; Bond, Laura; et el. (2024) Greatwall-Endos-PP2A/B55ᵀʷᶦⁿˢ
network regulates translation and stability of maternal transcripts in
the Drosophila oocyte-to-embryo transition; Open Biology; Vol. 14;
No. 6; 240065; 10.1098/rsob.240065
- Kim, Jane H.; Dong, Julianna; et el. (2024) Pseudomonas
aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI
Secretion in Response to Oxidative Stress to Initiate Biofilm Formation
and Wound Chronicity; Antioxidants; Vol. 13; No. 6; 655; PMCID
PMC11200925; 10.3390/antiox13060655
- Rabut, Claire; Norman, Sumner L.; et el. (2024) Functional
ultrasound imaging of human brain activity through an acoustically
transparent cranial window; Science Translational Medicine; Vol. 16;
No. 749; eadj3143; 10.1126/scitranslmed.adj3143
- Panda, Pallavi; Ladinsky, Mark S.; et el. (2024) 9-fold
symmetry is not essential for centriole elongation and formation of new
centriole-like structures; Nature Communications; Vol. 15; 4467;
PMCID PMC11127918; 10.1038/s41467-024-48831-y
- Zhu, Meng; Meglicki, Maciej; et el. (2024) Tead4 and
Tfap2c generate bipotency and a bistable switch in totipotent embryos to
promote robust lineage diversification; Nature Structural &
Molecular Biology; 10.1038/s41594-024-01311-9
- Chen, Alex B.; Duque, Marc; et el. (2024) Norepinephrine
changes behavioral state via astroglial purinergic signaling; PMCID
PMC11142163; 10.1101/2024.05.23.595576
- Xia, Shiyu; Lu, Andrew C.; et el. (2024) Synthetic
protein circuits for programmable control of mammalian cell death;
Cell; Vol. 187; No. 11; 2785-2800.e16; PMCID PMC11127782; 10.1016/j.cell.2024.03.031
- Junyent, Sergi; Meglicki, Maciej; et el. (2024) The first
two blastomeres contribute unequally to the human embryo; Cell; Vol.
187; No. 11; 2838-2854.e17; 10.1016/j.cell.2024.04.029
- Neumann, Adam P.; Sage, Eric; et el. (2024) A Hybrid
Orbitrap‐Nanoelectromechanical Systems Approach to Analysis of
Individual, Intact Proteins in Real Time; Angewandte Chemie
International Edition; e202317064; 10.1002/anie.202317064
- Bou Daher, Firas; Serra, Leo; et el. (2024) Xyloglucan
deficiency leads to a reduction in turgor pressure and changes in cell
wall properties, affecting early seedling establishment; Current
Biology; Vol. 34; No. 10; 2094-2106.e6; PMCID PMC11111339; 10.1016/j.cub.2024.04.016
- Castellaneta, Andrea; Losito, Ilario; et el. (2024) Lipidomics
reveals the reshaping of the mitochondrial phospholipid profile in cells
lacking OPA1 and Mitofusins; Journal of Lipid Research; 100563; 10.1016/j.jlr.2024.100563
- Laubscher, Emily; Wang, Xuefei (Julie); et el. (2024) Accurate
single-molecule spot detection for image-based spatial transcriptomics
with weakly supervised deep learning; Cell Systems; Vol. 15; No. 5;
475-482.e6; 10.1016/j.cels.2024.04.006
- Prakash, Sharan J.; Van Auken, Kimberly M.; et el. (2024) Correction:
Semantic representation of neural circuit knowledge in Caenorhabditis
elegans; Brain Informatics; Vol. 11; 13; 10.1186/s40708-024-00226-x
- Sun, Jingjing; Durmaz, Ayse Damla; et el. (2024) Two
sequential gene expression programs bridged by cell division support
long-distance collective cell migration; Development; Vol. 151;
No. 10; dev202262; PMCID PMC11165717; 10.1242/dev.202262
- She, Liang; Benna, Marcus K.; et el. (2024) Temporal
multiplexing of perception and memory codes in IT cortex; Nature;
Vol. 629; No. 8013; 861-868
- Bosch, Thomas C. G.; Wigley, Mark; et el. (2024) The
potential importance of the built-environment microbiome and its impact
on human health; Proceedings of the National Academy of Sciences;
Vol. 121; No. 20; e2313971121; PMCID PMC11098107; 10.1073/pnas.2313971121
- Almhjell, Patrick J.; Johnston, Kadina E.; et el. (2024) The
β-subunit of tryptophan synthase is a latent tyrosine synthase;
Nature Chemical Biology; 10.1038/s41589-024-01619-z
- Rosenthal, Isabelle A.; Bashford, Luke; et el. (2024) Visual
context affects the perceived timing of tactile sensations elicited
through intra-cortical microstimulation; PMCID PMC11118490; 10.1101/2024.05.13.593529
- Wandelt, Sarah K.; Bjånes, David A.; et el. (2024) Representation
of internal speech by single neurons in human supramarginal gyrus;
Nature Human Behaviour; 10.1038/s41562-024-01867-y
- Bhat, Prashant; Chow, Amy; et el. (2024) Genome
organization around nuclear speckles drives mRNA splicing
efficiency; Nature; 10.1038/s41586-024-07429-6
- Bosch, Thomas C. G.; Blaser, Martin J.; et el. (2024) A new
lexicon in the age of microbiome research; Philosophical
Transactions of the Royal Society B: Biological Sciences; Vol. 379;
No. 1901; 20230060; PMCID PMC10945402; 10.1098/rstb.2023.0060
- Hills, Rory A.; Tan, Tiong Kit; et el. (2024) Proactive
vaccination using multiviral Quartet Nanocages to elicit broad
anti-coronavirus responses; Nature Nanotechnology; 10.1038/s41565-024-01655-9
- Aghilinejad, Arian and Gharib, Morteza (2024) Assessing
pressure wave components for aortic stiffness monitoring through
spectral regression learning; European Heart Journal Open; Vol. 4;
No. 3; oeae040; PMCID PMC11165314; 10.1093/ehjopen/oeae040
- Sato, Nanami; Rosa, Viviane S.; et el. (2024) Basal
delamination during mouse gastrulation primes pluripotent cells for
differentiation; Developmental Cell; Vol. 59; No. 10; 1252-1268.e13;
10.1016/j.devcel.2024.03.008
- Wright, Adam; Wilkinson, Mark D.; et el. (2024) FAIR
Header Reference genome: a TRUSTworthy standard; Briefings in
Bioinformatics; Vol. 25; No. 3; bbae122; PMCID PMC10981671; 10.1093/bib/bbae122
- Tsypin, Lev M. Z.; Saunders, Scott H.; et el. (2024) Genetically
dissecting the electron transport chain of a soil bacterium reveals a
generalizable mechanism for biological phenazine-1-carboxylic acid
oxidation; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
- Yamashita, Shun-ichi; Sugiura, Yuki; et el. (2024) Mitophagy
mediated by BNIP3 and NIX protects against ferroptosis by downregulating
mitochondrial reactive oxygen species; Cell Death &
Differentiation; Vol. 31; No. 5; 651-661; PMCID PMC11094013; 10.1038/s41418-024-01280-y
- Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical
limits of energy extraction in active fluids; Physical Review
Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
- Aleksander, Suzanne A.; Anagnostopoulos, Anna V.; et el. (2024) Updates
to the Alliance of Genome Resources central infrastructure;
Genetics; Vol. 227; No. 1; iyae049; PMCID PMC11075569; 10.1093/genetics/iyae049
- Sternberg, Paul W.; Van Auken, Kimberly; et el. (2024) WormBase
2024: status and transitioning to Alliance infrastructure; Genetics;
Vol. 227; No. 1; iyae050; PMCID PMC11075546; 10.1093/genetics/iyae050
- Wang, Bo; Torok, Zsofia; et el. (2024) Unsupervised
restoration of a complex learned behavior after large-scale neuronal
perturbation; Nature Neuroscience; 10.1038/s41593-024-01630-6
- Desingu Rajan, Ayyappa Raja; Huang, Yuanyun; et el. (2024) Generation
of a zebrafish neurofibromatosis model via inducible knockout of
nf2; 10.1101/2024.04.23.590787
- Watson, Joseph L.; Seinkmane, Estere; et el. (2024) Author
Correction: Macromolecular condensation buffers intracellular water
potential; Nature; Vol. 628; E4; 10.1038/s41586-024-07346-8
- Ross, Karen E.; Bastian, Frederic B.; et el. (2024) Perspectives
on tracking data reuse across biodata resources; Bioinformatics
Advances; Vol. 4; vbae057; PMCID PMC11076920; 10.1093/bioadv/vbae057
- Kim, Na Yeon; He, Junfeng; et el. (2024) Smartphone‐based
gaze estimation for in‐home autism research; Autism Research; 10.1002/aur.3140
- Husar, Adam; Ordyan, Mariam; et el. (2024) MCell4
with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion
systems with Python interface; PLoS Computational Biology; 10.1371/journal.pcbi.1011800
- Griffiths, Jessica A.; Yoo, Bryan B.; et el. (2024) Peripheral
neuronal activation shapes the microbiome and alters gut physiology;
Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
- Parker, Joseph (2024) Symbiosis:
Did bacteria bias the beetle big bang?; Current Biology; Vol. 34;
No. 8; R323-R325; 10.1016/j.cub.2024.03.009
- Gornet, James A. and Thomson, Matt (2024) Automated
construction of cognitive maps with predictive coding; bioRxiv;
2023.09.18.558369; 10.1101/2023.09.18.558369
- Daume, Jonathan; Kamiński, Jan; et el. (2024) Control
of working memory by phase–amplitude coupling of human hippocampal
neurons; Nature; 10.1038/s41586-024-07309-z
- Melis, Johan M.; Siwanowicz, Igor; et el. (2024) Machine
learning reveals the control mechanics of an insect wing hinge;
Nature; 10.1038/s41586-024-07293-4
- Edens, Brittany M.; Stundl, Jan; et el. (2024) Neural
crest origin of sympathetic neurons at the dawn of vertebrates;
Nature; 10.1038/s41586-024-07297-0
- Andersson, Emil; Rothenberg, Ellen V.; et el. (2024) T-cell
commitment inheritance—an agent-based multi-scale model; npj Systems
Biology and Applications; Vol. 10; 40; PMCID PMC11024127; 10.1038/s41540-024-00368-y
- Rich, Joseph M.; Moses, Lambda; et el. (2024) The
impact of package selection and versioning on single-cell RNA-seq
analysis; PMCID PMC11014608; 10.1101/2024.04.04.588111
- Magkiriadou, Sofia; Stepp, Willi L.; et el. (2024) Polyphosphate
affects cytoplasmic and chromosomal dynamics in nitrogen-starved
Pseudomonas aeruginosa; Proceedings of the National Academy of
Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
- Ding, Xiaozhe; Chen, Xinhong; et el. (2024) Fast,
accurate ranking of engineered proteins by target-binding propensity
using structure modeling; Molecular Therapy; 10.1016/j.ymthe.2024.04.003
- Guo, Jimmy K.; Blanco, Mario R.; et el. (2024) Denaturing
purifications demonstrate that PRC2 and other widely reported chromatin
proteins do not appear to bind directly to RNA in vivo; Molecular
Cell; Vol. 84; No. 7; 1271-1289.e12; PMCID PMC10997485; 10.1016/j.molcel.2024.01.026
- Wallach, Izhar; Bernard, Denzil; et el. (2024) AI is a
viable alternative to high throughput screening: a 318-target study;
Scientific Reports; Vol. 14; 7526; 10.1038/s41598-024-54655-z
- Booeshaghi, Ali Sina; Chen, Xi; et el. (2024) A
machine-readable specification for genomics assays; Bioinformatics;
Vol. 40; No. 4; btae168; PMCID PMC11009023; 10.1093/bioinformatics/btae168
- Endo, Yoshitaka; Asanuma, Rinka; et el. (2024) Systematic
Face Pareidolia Generation Method Using Cycle‐Consistent Adversarial
Networks; IEEJ Transactions on Electrical and Electronic
Engineering; Vol. 19; No. 4; 535-541; 10.1002/tee.23997
- Booeshaghi, A. Sina; Galvez-Merchán, Ángel; et el. (2024) Algorithms
for a Commons Cell Atlas; 10.1101/2024.03.23.586413
- Ma, Jun; Xie, Ronald; et el. (2024) The
multimodality cell segmentation challenge: toward universal
solutions; Nature Methods; 10.1038/s41592-024-02233-6
- Markarian, Nicholas; Van Auken, Kimberly M.; et el. (2024) Enrichment
on steps, not genes, improves inference of differentially expressed
pathways; PLOS Computational Biology; Vol. 20; No. 3; e1011968;
PMCID PMC10994554; 10.1371/journal.pcbi.1011968
- Tran, Martin; Askary, Amjad; et el. (2024) Lineage
motifs as developmental modules for control of cell type
proportions; Developmental Cell; Vol. 59; No. 6; 812-826.e3; PMCID
PMC10910499
- Chakrabarty, Yogaditya; Yang, Zheng; et el. (2024) The HRI
branch of the integrated stress response selectively triggers
mitophagy; Molecular Cell; Vol. 84; No. 6; 1090-1100.e6; PMCID
PMC11062084; 10.1016/j.molcel.2024.01.016
- Muthukumar, Gayathri; Stevens, Taylor A.; et el. (2024) Triaging
of α-helical proteins to the mitochondrial outer membrane by distinct
chaperone machinery based on substrate topology; Molecular Cell;
Vol. 84; No. 6; 1101-1119.e9; 10.1016/j.molcel.2024.01.028
- Flynn, Michael James; Mayfield, Acacia M.; et el. (2024) Synthetic
dosage-compensating miRNA circuits allow precision gene therapy for Rett
syndrome; bioRxiv; 2024.03.13.584179; PMCID PMC10980028; 10.1101/2024.03.13.584179
- Suzuki, Miyuki; Okumura, Akinori; et el. (2024) Fgf10
mutant newts regenerate normal hindlimbs despite severe developmental
defects; Proceedings of the National Academy of Sciences; Vol. 121;
No. 11; e2314911121; PMCID PMC10945807; 10.1073/pnas.2314911121
- Du, Rongrong; Flynn, Michael J.; et el. (2024) miRNA
circuit modules for precise, tunable control of gene expression;
bioRxiv; 2024.03.12.583048; PMCID PMC10979901; 10.1101/2024.03.12.583048
- Kubinski, Hannah C.; Despres, Hannah W.; et el. (2024) Variant
mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered
genomic encapsidation; bioRxiv; 53; PMCID PMC10979914; 10.1101/2024.03.08.584120
- Israel, Uriah; Marks, Markus; et el. (2024) A
Foundation Model for Cell Segmentation; bioRvix; 2023.11.17.567630;
PMCID PMC10690226; 10.1101/2023.11.17.567630
- Weatherbee, Bailey A. T.; Weberling, Antonia; et el. (2024) Distinct
pathways drive anterior hypoblast specification in the implanting human
embryo; Nature Cell Biology; 10.1038/s41556-024-01367-1
- Jain, Sanjay; Pei, Liming; et el. (2024) Author
Correction: Advances and prospects for the Human BioMolecular Atlas
Program (HuBMAP); Nature Cell Biology; Vol. 26; 10.1038/s41556-024-01384-0
- Baltimore, David; Tatel, David S.; et el. (2024) Preface:
Recognizing Implicit Bias in the Scientific & Legal Communities;
Daedalus; Vol. 153; No. 1; 6-7; 10.1162/daed_e_02043
- Luebbert, Laura; Hoang, Chi; et el. (2024) Fast and
scalable querying of eukaryotic linear motifs with gget elm;
Bioinformatics; Vol. 40; No. 3; btae095; PMCID PMC10927331; 10.1093/bioinformatics/btae095
- Zhang, Tony; Rosenberg, Matthew; et el. (2024) Endotaxis:
A neuromorphic algorithm for mapping, goal-learning, navigation, and
patrolling; eLife; Vol. 12; RP84141; PMCID PMC10911395; 10.7554/elife.84141
- Wang, Eric; Cohen, Alexander A.; et el. (2024) Designed
mosaic nanoparticles enhance cross-reactive immune responses in
mice; PMCID PMC10925254; 10.1101/2024.02.28.582544
- Yang, Jason; Li, Francesca-Zhoufan; et el. (2024) Opportunities
and Challenges for Machine Learning-Assisted Enzyme Engineering; ACS
Central Science; Vol. 10; No. 2; 226-241; PMCID PMC10906252; 10.1021/acscentsci.3c01275
- Zhang, Irene H.; Borer, Benedict; et el. (2024) Uncultivated
DPANN archaea are ubiquitous inhabitants of global oxygen-deficient
zones with diverse metabolic potential; mBio; e02918-23; 10.1128/mbio.02918-23
- Bedois, Alice M. H.; Parker, Hugo J.; et el. (2024) Sea
lamprey enlightens the origin of the coupling of retinoic acid signaling
to vertebrate hindbrain segmentation; Nature Communications; Vol.
15; 1538; PMCID PMC10879103; 10.1038/s41467-024-45911-x
- Meyerowitz, Joseph T.; Larsson, Elin M.; et el. (2024) Development
of Cell-Free Transcription–Translation Systems in Three Soil
Pseudomonads; ACS Synthetic Biology; Vol. 13; No. 2; 530-537; 10.1021/acssynbio.3c00468
- Schulte, Samuel J.; Shin, Boyoung; et el. (2024) Multiplex,
Quantitative, High-Resolution Imaging of Protein:Protein Complexes via
Hybridization Chain Reaction; ACS Chemical Biology; Vol. 19; No. 2;
280-288; PMCID PMC10877569; 10.1021/acschembio.3c00431
- Cohen, Alexander A.; Keeffe, Jennifer R.; et el. (2024) Mosaic
sarbecovirus vaccination elicits cross-reactive responses in
pre-immunized animals; PMCID PMC10871317; 10.1101/2024.02.08.576722
- Dam, Kim-Marie A.; Fan, Chengcheng; et el. (2024) Publisher
Correction: Intermediate conformations of CD4-bound HIV-1 Env
heterotrimers; Nature; Vol. 627; E7; 10.1038/s41586-024-07082-z
- Schwartz, Hillel T.; Tan, Chieh-Hsiang; et el. (2024) Molecular
identification of a peroxidase gene controlling body size in the
entomopathogenic nematode Steinernema hermaphroditum; Genetics; Vol.
226; No. 2; iyad209; 10.1093/genetics/iyad209
- Ros, Ivo G.; Omoto, Jaison J.; et el. (2024) Descending
control and regulation of spontaneous flight turns in Drosophila;
Current Biology; Vol. 34; No. 3; 531-540.e5; PMCID PMC10872223; 10.1016/j.cub.2023.12.047
- Flamholz, Avi I.; Goyal, Akshit; et el. (2024) The
proteome is a terminal electron acceptor; PMCID PMC10862836; 10.1101/2024.01.31.578293
- Banerjee, Navonil; Rojas Palato, Elisa J.; et el. (2024) Distinct
neurogenetic mechanisms establish the same chemosensory valence state at
different life stages in Caenorhabditis elegans; G3: Genes, Genomes,
Genetics; Vol. 14; No. 2; jkad271; PMCID PMC10849362; 10.1093/g3journal/jkad271
- Schulte, Samuel J.; Fornace, Mark E.; et el. (2024) HCR
spectral imaging: 10-plex, quantitative, high-resolution RNA and protein
imaging in highly autofluorescent samples; Development; Vol. 151;
No. 4; dev202307; PMCID PMC10941662; 10.1242/dev.202307
- Piacentino, Michael L.; Fasse, Aria J.; et el. (2024) SMPD3
expression is spatially regulated in the developing embryo by SOXE
factors; Developmental Biology; Vol. 506; 31-41; PMCID PMC10872304;
10.1016/j.ydbio.2023.11.011
- Kim, Jane H.; Spero, Melanie; et el. (2024) Targeting
Anaerobic Respiration in Pseudomonas aeruginosa with Chlorate Improves
Healing of Chronic Wounds; Advances in Wound Care; Vol. 13; No. 2;
53-69; 10.1089/wound.2023.0036
- Huang, Yu Xi; Mahler, Simon; et el. (2024) A compact
and cost-effective laser-powered speckle visibility spectroscopy (SVS)
device for measuring cerebral blood flow; PMCID PMC10862935; 10.48550/arxiv.2401.16592
- Haloi, Nandan; Huang, Shan; et el. (2024) Interactive
computational and experimental approaches improve the sensitivity of
periplasmic binding protein-based nicotine biosensors for measurements
in biofluids; Protein Engineering, Design and Selection; Vol. 37;
gzae003; PMCID PMC10896302; 10.1093/protein/gzae003
- Rodak, Nathan Y.; Tan, Chieh-Hsiang; et el. (2024) An
improved solid medium-based culturing method for Steinernema
hermaphroditum; microPublication Biology;
10.17912/micropub.biology.001110; PMCID PMC10858997; 10.17912/micropub.biology.001110
- Liu, Yi; Lei, Miao; et el. (2024) Electronic
inputs to cue the emergence of hydrogel structure and to confer
function; Materials Letters; Vol. 355; 135497; 10.1016/j.matlet.2023.135497
- Granados, Alejandro A.; Kanrar, Nivedita; et el. (2024) Combinatorial
expression motifs in signaling pathways; Cell Genomics; Vol. 4;
No. 1; 100463; PMCID PMC10794782; 10.1016/j.xgen.2023.100463
- Zhou, Tingtao; Wan, Xuan; et el. (2024) AI-aided
geometric design of anti-infection catheters; Science Advances; Vol.
10; No. 1; eadj1741; PMCID PMC10776022; 10.1126/sciadv.adj1741
- Hoehler, Tori M.; Amend, Jan P.; et el. (2024) Editorial:
Studies on life at the energetic edge – from laboratory experiments to
field-based investigations, volume II; Frontiers in Microbiology;
Vol. 14; 10.3389/fmicb.2023.1351761
- Larsson, Elin M.; Murray, Richard M.; et el. (2024) Engineering
the Soil Bacterium Pseudomonas synxantha 2–79 into a Ratiometric
Bioreporter for Phosphorus Limitation; ACS Synthetic Biology; 10.1021/acssynbio.3c00642
- Wackelin, Daniel J.; Mao, Runze; et el. (2024) Enzymatic
Assembly of Diverse Lactone Structures: An Intramolecular C–H
Functionalization Strategy; Journal of the American Chemical
Society; 10.1021/jacs.3c11722
- Gorin, Gennady and Pachter, Lior (2024) New and
notable: Revisiting the “two cultures” through extrinsic noise;
Biophysical Journal; Vol. 123; No. 1; 1-3; 10.1016/j.bpj.2023.11.3400
- Vasquez Ayala, Adriana; Hsu, Chia-Yun; et el. (2024) Commensal
bacteria promote type I interferon signaling to maintain immune
tolerance in mice; Journal of Experimental Medicine; Vol. 221;
No. 1; e20230063; PMCID PMC10716256; 10.1084/jem.20230063
- Li, Ching-Yao; Chou, Tsui-Fen; et el. (2024) An
innovative nanoformulation utilizing tumor microenvironment-responsive
PEG-polyglutamic coating and dynamic charge adjustment for specific
targeting of ER stress inducer, microRNA, and immunoadjuvant in
pancreatic cancer: In vitro investigations; International Journal of
Biological Macromolecules; Vol. 254; No. Pt. 2; 127905; 10.1016/j.ijbiomac.2023.127905
- Booeshaghi, A. Sina; Min, Kyung Hoi (Joseph); et el. (2024) Quantifying
orthogonal barcodes for sequence census assays; Bioinformatics
Advances; Vol. 4; vbad181; PMCID PMC10783946; 10.1093/bioadv/vbad181
- Subramanian, Arjuna M. and Thomson, Matt (2023) Unexplored
regions of the protein sequence-structure map revealed at scale by a
library of foldtuned language models; PMCID PMC10769378; 10.1101/2023.12.22.573145
- Zhang, Yameng; Pool, Allan-Hermann; et el. (2023) Parallel
neural pathways control sodium consumption and taste valence; Cell;
Vol. 186; No. 26; 5751-5765.e16; 10.1016/j.cell.2023.10.020
- Nava, Stephanie; Palma, Wilber; et el. (2023) A
cGAL-UAS bipartite expression toolkit for Caenorhabditis elegans sensory
neurons; Proceedings of the National Academy of Sciences; Vol. 120;
No. 51; e2221680120; PMCID PMC10743456; 10.1073/pnas.2221680120
- Sperling, Alexis L. and Glover, David M. (2023) Protocol
for screening facultative parthenogenesis in Drosophila; STAR
Protocols; Vol. 4; No. 4; 102585; PMCID PMC10520562; 10.1016/j.xpro.2023.102585
- Zhang, Bao; He, Peng; et el. (2023) A human
embryonic limb cell atlas resolved in space and time; Nature; 10.1038/s41586-023-06806-x
- Zernicka-Goetz, Magdalena (2023) The
evolution of embryo models; Nature Methods; 10.1038/s41592-023-02077-6
- Sader, John E.; Stassi, Stefano; et el. (2023) Effect of
intramodal and intermodal nonlinearities on the flexural resonant
frequencies of cantilevered beams; Physical Review B; Vol. 108;
No. 22; 224303; 10.1103/physrevb.108.224303
- Lau, Kasey Y. C.; Amadei, Gianluca; et el. (2023) Assembly
of complete mouse embryo models from embryonic and induced stem cell
types in vitro; Nature Protocols; Vol. 18; No. 12; 3662-3689; 10.1038/s41596-023-00891-y
- Yang, Zheng and Chan, David C. (2023) Control
of mitochondrial dynamics by a fusogenic lipid; Trends in Cell
Biology; Vol. 33; No. 12; 1005-1006; PMCID PMC10841390; 10.1016/j.tcb.2023.10.006
- Shao, Shuai; Meister, Markus; et el. (2023) Efficient
population coding of sensory stimuli; Physical Review Research; Vol.
5; No. 4; 043205; 10.1103/physrevresearch.5.043205
- Nemet, Ina; Funabashi, Masanori; et el. (2023) Microbe-derived
uremic solutes enhance thrombosis potential in the host; mBio; Vol.
14; No. 6; e01331-23; 10.7907/ha07h-ryw11
- Bult, Carol J. and Sternberg, Paul W. (2023) The
alliance of genome resources: transforming comparative genomics;
Mammalian Genome; Vol. 34; No. 4; 531-544; PMCID PMC10628019; 10.1007/s00335-023-10015-2
- Tropini, Carolina; Finlay, B. Brett; et el. (2023) Time to
rethink academic publishing: the peer reviewer crisis; mBio; Vol.
14; No. 6; e01091-23; PMCID PMC10746150; 10.1128/mbio.01091-23
- Griggs, Whitney S.; Norman, Sumner L.; et el. (2023) Decoding
motor plans using a closed-loop ultrasonic brain–machine interface;
Nature Neuroscience; 10.1038/s41593-023-01500-7
- Sperling, A. L. and Glover, D. M. (2023) Aneuploidy
during development in facultative parthenogenetic Drosophila;
Heredity; 10.1038/s41437-023-00664-z
- Godneeva, Baira; Ninova, Maria; et el. (2023) SUMOylation
of Bonus, the Drosophila homolog of Transcription Intermediary Factor 1,
safeguards germline identity by recruiting repressive chromatin
complexes to silence tissue-specific genes; eLife; Vol. 12; RP89493;
PMCID PMC10672805; 10.7554/elife.89493
- Polonsky, Michal; Gerhardt, Louisa M. S.; et el. (2023) Spatial
transcriptomics defines injury-specific microenvironments in the adult
mouse kidney and novel cellular interactions in regeneration and
disease; bioRxiv; 10.1101/2023.11.22.568217
- Stevens, Taylor Anthony; Pinton Tomaleri, Giovani; et el. (2023) A
nanobody-based strategy for rapid and scalable purification of human
protein complexes; Nature Protocols; 10.1038/s41596-023-00904-w
- Martinez, Zachary A; Murray, Richard M.; et el. (2023) TRILL:
Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable
Protein Analysis and Engineering; bioRxiv; 2023.10.24.563881; PMCID
PMC10659302; 10.1101/2023.10.24.563881
- Xiong, Lingyun; Liu, Jing; et el. (2023) Direct
androgen receptor control of sexually dimorphic gene expression in the
mammalian kidney; Developmental Cell; Vol. 58; No. 21; 2338-2358.e5;
PMCID PMC10873092; 10.1016/j.devcel.2023.08.010
- Spolski, Rosanne; Li, Peng; et el. (2023) Distinct
use of super-enhancer elements controls cell type–specific CD25
transcription and function; Science Immunology; Vol. 8; No. 89;
eadi8217; 10.1126/sciimmunol.adi8217
- Mah-Som, Annelise Y.; Daw, Jil; et el. (2023) An
autosomal-dominant childhood-onset disorder associated with pathogenic
variants in VCP; American Journal of Human Genetics; Vol. 110;
No. 11; 1959-1975; PMCID PMC10645565
- Mao, Runze; Taylor, Doris Mia; et el. (2023) Biocatalytic,
stereoconvergent alkylation of (Z/E)-trisubstituted silyl enol
ethers; Nature Synthesis; 10.1038/s44160-023-00431-2
- Luo, Yicheng; He, Peng; et el. (2023) Maternally
inherited siRNAs initiate piRNA cluster formation; Molecular Cell;
Vol. 83; No. 21; 3835-3851.e7; PMCID PMC10846595; 10.1016/j.molcel.2023.09.033
- Salahshoor, Hossein; Yao, Yuxing; et el. (2023) Geometric
effects in gas vesicle buckling under ultrasound; Biophysical
Journal; Vol. 121; No. 21; 4221-4228; PMCID PMC9674984; 10.1016/j.bpj.2022.09.004
- Gorin, Gennady; Yoshida, Shawn; et el. (2023) Assessing
Markovian and Delay Models for Single-Nucleus RNA Sequencing;
Bulletin of Mathematical Biology; Vol. 85; No. 11; 114; 10.1007/s11538-023-01213-9
- Moyers, Belle A.; Partridge, E. Christopher; et el. (2023) Characterization
of human transcription factor function and patterns of gene regulation
in HepG2 cells; Genome Research; Vol. 33; No. 11; 1879-1892; PMCID
PMC10760452; 10.1101/gr.278205.123
- Godneeva, Baira; Fejes Toth, Katalin; et el. (2023) Impact of
Germline Depletion of Bonus on Chromatin State in Drosophila
Ovaries; Cells; Vol. 12; No. 22; 2629; PMCID PMC10670193; 10.3390/cells12222629
- Candry, Pieter; Chadwick, Grayson L.; et el. (2023) Trophic
interactions shape the spatial organization of medium-chain carboxylic
acid producing granular biofilm communities; ISME Journal; Vol. 17;
No. 11; 2014-2022; PMCID PMC10579388; 10.1038/s41396-023-01508-8
- Sun, Jingjing; Zhang, Chen; et el. (2023) Single-cell
transcriptomics illuminates regulatory steps driving anterior-posterior
patterning of Drosophila embryonic mesoderm; Cell Reports; Vol. 42;
No. 10; 113289; PMCID PMC10704487; 10.1016/j.celrep.2023.113289
- Guna, Alina; Page, Katharine R.; et el. (2023) A dual
sgRNA library design to probe genetic modifiers using genome-wide
CRISPRi screens; BMC Genomics; Vol. 24; 651; PMCID PMC10614335; 10.1186/s12864-023-09754-y
- Jacobs-Li, Jessica; Tang, Weiyi; et el. (2023) Single-cell
profiling coupled with lineage analysis reveals vagal and sacral neural
crest contributions to the developing enteric nervous system; eLife;
Vol. 12; e79156; PMCID PMC10627514; 10.7554/elife.79156
- Kahan, Anat; Mahe, Karan; et el. (2023) Immediate
responses to ambient light in vivo reveal distinct subpopulations of
suprachiasmatic VIP neurons; iScience; Vol. 26; No. 10; 107865;
PMCID PMC10520357; 10.1016/j.isci.2023.107865
- Gorin, Gennady; Vastola, John J.; et el. (2023) Studying
stochastic systems biology of the cell with single-cell genomics
data; Cell Systems; Vol. 14; No. 10; 822-843.e22; PMCID PMC10725240;
10.1016/j.cels.2023.08.004
- Zhang, Shu; Xie, Na; et el. (2023) The
Interferon-inducible NAMPT acts as a protein phosphoribosylase to
restrict viral infection; PMCID PMC10614811; 10.1101/2023.10.12.562112
- Wang, Renée Z.; Lonergan, Zachery R.; et el. (2023) Widespread
detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O
under anoxia; PMCID PMC10592819; 10.1101/2023.10.13.562248
- Mohanty, Atish; Nam, Arin; et el. (2023) Acquired
resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic
mechanisms in lung cancer; Science Advances; Vol. 9; No. 41;
eade3816; PMCID PMC10575592; 10.1126/sciadv.ade3816
- Wu-Woods, Natalie J.; Barlow, Jacob T.; et el. (2023) Microbial-enrichment
method enables high-throughput metagenomic characterization from
host-rich samples; Nature Methods; 10.1038/s41592-023-02025-4
- Hung, Shao-Min; Adams, Sara W.; et el. (2023) Practice
makes imperfect: stronger implicit interference with practice in
individuals at high risk of developing Alzheimer’s disease;
GeroScience; 10.1007/s11357-023-00953-9
- Albright, Thomas D.; Baltimore, David; et el. (2023) Science,
evidence, law, and justice; Proceedings of the National Academy of
Sciences; Vol. 120; No. 41; e2312529120; PMCID PMC10576109; 10.1073/pnas.2312529120
- Cohen, Alexander A.; van Doremalen, Neeltje; et el. (2023) Mosaic
RBD nanoparticles protect against multiple sarbecovirus challenges in
animal models; PMCID PMC8978945; 10.1101/2022.03.25.485875
- Afik, Eldad; Liu, Toni J. B.; et el. (2023) Macroscopic
waves, biological clocks and morphogenesis driven by light in a giant
unicellular green alga; Nature Communications; Vol. 14; 6204; PMCID
PMC10550971; 10.1038/s41467-023-41813-6
- Blumenfeld, Zack; Bera, Kallol; et el. (2023) Antidepressants
enter cells, organelles, and membranes; Neuropsychopharmacology; 10.1038/s41386-023-01725-x
- Lamanna, Francesco; Hervas-Sotomayor, Francisca; et el. (2023) A lamprey
neural cell type atlas illuminates the origins of the vertebrate
brain; Nature Ecology & Evolution; Vol. 7; No. 10; 1714-1728;
PMCID PMC10555824; 10.1038/s41559-023-02170-1
- Venkei, Zsolt G.; Gainetdinov, Ildar; et el. (2023) A
maternally programmed intergenerational mechanism enables male offspring
to make piRNAs from Y-linked precursor RNAs in Drosophila; Nature
Cell Biology; Vol. 25; No. 10; 1495-1505; PMCID PMC10567549; 10.1038/s41556-023-01227-4
- Tu, Jiaobing; Min, Jihong; et el. (2023) A
wireless patch for the monitoring of C-reactive protein in sweat;
Nature Biomedical Engineering; Vol. 7; No. 10; 1293-1306; PMCID
PMC10592261; 10.1038/s41551-023-01059-5
- Chuapoco, Miguel R.; Flytzanis, Nicholas C.; et el. (2023) Adeno-associated
viral vectors for functional intravenous gene transfer throughout the
non-human primate brain; Nature Nanotechnology; Vol. 18; No. 10;
1241-1251; PMCID PMC10575780; 10.1038/s41565-023-01419-x
- Schiava, Marianela; Ikenaga, Chiseko; et el. (2023) Clinical
Classification of Variants in the Valosin-Containing Protein Gene
Associated With Multisystem Proteinopathy; Neurology Genetics; Vol.
9; No. 5; e200093; 10.1212/nxg.0000000000200093
- Ji, Jenny; Viloria Winnett, Alexander; et el. (2023) Index
cases first identified by nasal-swab rapid COVID-19 tests had more
transmission to household contacts than cases identified by other test
types; PLOS ONE; Vol. 18; No. 10; e0292389; PMCID PMC10553276; 10.1371/journal.pone.0292389
- Lim, Jeffrey; Wang, Po T.; et el. (2023) Suppression
of cortical electrostimulation artifacts using pre-whitening and null
projection; Journal of Neural Engineering; Vol. 20; No. 5; 56018; 10.1088/1741-2552/acf68b
- Prakash, Sharan J.; Van Auken, Kimberly M.; et el. (2023) Semantic
Representation of Neural Circuit Knowledge in Caenorhabditis
elegans; PMCID PMC10168330; 10.1101/2023.04.28.538760
- Sockell, Alexandra; Wong, Wing; et el. (2023) A
microwell platform for high-throughput longitudinal phenotyping and
selective retrieval of organoids; Cell Systems; Vol. 14; No. 9;
764-776.e6; 10.1016/j.cels.2023.08.002
- Ma, Yitong; Budde, Mark W.; et el. (2023) Tuning
Methylation-Dependent Silencing Dynamics by Synthetic Modulation of CpG
Density; ACS Synthetic Biology; Vol. 12; No. 9; 2536-2545; PMCID
PMC10510725; 10.1021/acssynbio.3c00078
- Sperling, Alexis L.; Fabian, Daniel K.; et el. (2023) A genetic
basis for facultative parthenogenesis in Drosophila; Current
Biology; Vol. 33; No. 17; 3545-3560.e13; PMCID PMC11044649; 10.1016/j.cub.2023.07.006
- Weng, Jen-Wei; Park, Heenam; et el. (2023) Body
stiffness is a mechanical property that facilitates contact-mediated
mate recognition in Caenorhabditis elegans; Current Biology; Vol.
33; No. 17; 3585-3596.e5; PMCID PMC10530406; 10.1016/j.cub.2023.07.020
- Pool, Allan-Hermann; Poldsam, Helen; et el. (2023) Recovery
of missing single-cell RNA-sequencing data with optimized transcriptomic
references; Nature Methods; 10.1038/s41592-023-02003-w
- Booeshaghi, A. Sina; Beltrame, Eduardo da Veiga; et el. (2023) Author
Correction: Principles of open source bioinstrumentation applied to the
poseidon syringe pump system; Scientific Reports; Vol. 13; 14834;
PMCID PMC10491597; 10.1038/s41598-023-42035-y
- Poceviciute, Roberta; Bogatyrev, Said R.; et el. (2023) Quantitative
whole-tissue 3D imaging reveals bacteria in close association with mouse
jejunum mucosa; npj Biofilms and Microbiomes; Vol. 9; 64; PMCID
PMC10485000; 10.1038/s41522-023-00423-2
- Gao, Shilong; Das, Anuvab; et el. (2023) Enzymatic
Nitrogen Incorporation Using Hydroxylamine; Journal of the American
Chemical Society; Vol. 145; No. 37; 20196-20201; PMCID PMC10560455; 10.1021/jacs.3c08053
- Henrickson, Amy; Ding, Xiaozhe; et el. (2023) Characterization
and quantification of adeno-associated virus capsid-loading states by
multi-wavelength analytical ultracentrifugation with UltraScan;
Nanomedicine; Vol. 18; No. 22; 1519-1534; PMCID PMC10652292; 10.2217/nnm-2023-0156
- Triggiani, Antonio I.; Kreiman, Gabriel; et el. (2023) Corrigendum
to “What is the intention to move and when does it occur?”;
Neuroscience and Biobehavioral Reviews; Vol. 152; Art. No. 105318; 10.1016/j.neubiorev.2023.105318
- Murali, Ranjani; Yu, Hang; et el. (2023) Physiological
potential and evolutionary trajectories of syntrophic sulfate-reducing
bacterial partners of anaerobic methanotrophic archaea; PLOS
Biology; Vol. 21; No. 9; e3002292; PMCID PMC10553843; 10.1371/journal.pbio.3002292
- Jang, Min J.; Coughlin, Gerard M.; et el. (2023) Spatial
transcriptomics for profiling the tropism of viral vectors in
tissues; Nature Biotechnology; Vol. 41; No. 9; 1272-1286; PMCID
PMC10443732; 10.1038/s41587-022-01648-w
- Bao, Min; Cornwall-Scoones, Jake; et el. (2023) Stem
cell-derived synthetic embryos self-assemble by exploiting cadherin
codes and cortical tension; Nature Cell Biology; Vol. 24; No. 9;
1341-2349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
- Horns, Felix; Martinez, Joe A.; et el. (2023) Engineering
RNA export for measurement and manipulation of living cells; Cell;
Vol. 186; No. 17; 3642-3658.e32; PMCID PMC10528933; 10.1016/j.cell.2023.06.013
- Tran, Martin; Askary, Amjad; et el. (2023) Lineage
motifs: developmental modules for control of cell type proportions;
PMCID PMC10274800; 10.1101/2023.06.06.543925
- Jovanovic, Predrag; Pool, Allan-Hermann; et el. (2023) A
sex-specific thermogenic neurocircuit induced by predator smell
recruiting cholecystokinin neurons in the dorsomedial hypothalamus;
Nature Communications; Vol. 14; 4937; PMCID PMC10427624; 10.1038/s41467-023-40484-7
- Wolin, Erica; Guo, Jimmy K.; et el. (2023) SPIDR:
a highly multiplexed method for mapping RNA-protein interactions
uncovers a potential mechanism for selective translational suppression
upon cellular stress; PMCID PMC10274648; 10.1101/2023.06.05.543769
- Jackson, Kayla C. and Pachter, Lior (2023) A
standard for sharing spatial transcriptomics data; Cell Genomics;
Vol. 3; No. 8; 100374; PMCID PMC10435375; 10.1016/j.xgen.2023.100374
- Hesse, Janis K. and Tsao, Doris Y. (2023) Functional
modules for visual scene segmentation in macaque visual cortex;
Proceedings of the National Academy of Sciences; Vol. 120; No. 32;
e2221122120; PMCID PMC10410728; 10.1073/pnas.2221122120
- De Jonghe, Joachim; Kaminski, Tomasz S.; et el. (2023) spinDrop:
a droplet microfluidic platform to maximise single-cell sequencing
information content; Nature Communications; Vol. 14; 4788; PMCID
PMC10409775; 10.1038/s41467-023-40322-w
- Barlow, Ida L.; Mackay, Eirinn; et el. (2023) The
zebrafish mutant dreammist implicates sodium homeostasis in sleep
regulation; eLife; Vol. 12; RP87521; PMCID PMC10406431; 10.7554/elife.87521
- Luzzi, Anna; Wang, Feng; et el. (2023) Skeletal
muscle cell protein dysregulation highlights the pathogenesis mechanism
of myopathy-associated p97/VCP R155H mutations; Frontiers in
Neurology; Vol. 14; 1211635; PMCID PMC10435852
- Thalhammer, Korbinian O. and Newman, Dianne K. (2023) A
phenazine-inspired framework for identifying biological functions of
microbial redox-active metabolites; Current Opinion in Chemical
Biology; Vol. 75; Art. No. 102320; 10.1016/j.cbpa.2023.102320
- Pleiner, Tino; Hazu, Masami; et el. (2023) A
selectivity filter in the ER membrane protein complex limits protein
misinsertion at the ER; Journal of Cell Biology; Vol. 222; No. 8;
Art. No. e202212007; PMCID PMC10200711; 10.1083/jcb.202212007
- Santos, Inês B.; Wainman, Alan; et el. (2023) Mob4 is
essential for spermatogenesis in Drosophila melanogaster; GENETICS;
Vol. 224; No. 4; iyad104; PMCID PMC10411562; 10.1093/genetics/iyad104
- Herbst, Ellen D.; Pennington, David L.; et el. (2023) N-acetylcysteine
for smoking cessation among dual users of tobacco and cannabis: Protocol
and rationale for a randomized controlled trial; Contemporary
Clinical Trials; Vol. 131; 107250; 10.1016/j.cct.2023.107250
- Chari, Tara and Pachter, Lior (2023) The
specious art of single-cell genomics; PLOS Computational Biology;
Vol. 19; No. 8; e1011288; PMCID PMC10434946; 10.1371/journal.pcbi.1011288
- Hueschen, Christina L.; Dunn, Alexander R.; et el. (2023) Wildebeest
herds on rolling hills: Flocking on arbitrary curved surfaces;
Physical Review E; Vol. 108; No. 2; 024610; 10.1103/physreve.108.024610
- Haccard, Olivier; Ciardo, Diletta; et el. (2023) Rif1
restrains the rate of replication origin firing in Xenopus laevis;
Communications Biology; Vol. 6; 788; PMCID PMC10387115; 10.1038/s42003-023-05172-8
- Mao, Runze; Wackelin, Daniel J.; et el. (2023) Enantio-
and Diastereoenriched Enzymatic Synthesis of 1,2,3-Polysubstituted
Cyclopropanes from (Z/E)-Trisubstituted Enol Acetates; Journal of
the American Chemical Society; Vol. 145; No. 29; 16176-16185; PMCID
PMC10528827; 10.1021/jacs.3c04870
- Stundl, Jan; Martik, Megan L.; et el. (2023) Ancient
vertebrate dermal armor evolved from trunk neural crest; Proceedings
of the National Academy of Sciences of the United States of America;
Vol. 120; No. 30; e2221120120; PMCID PMC10372632; 10.1073/pnas.2221120120
- Shepherd, Doulin C.; Kaplan, Mohammed; et el. (2023) Morphological
remodeling of Coxiella burnetii during its biphasic developmental cycle
revealed by cryo-electron tomography; iScience; Vol. 26; No. 7;
107210; PMCID PMC10362272; 10.1016/j.isci.2023.107210
- Tusche, Anita; Spunt, Robert P.; et el. (2023) Neural
signatures of social inferences predict the number of real-life social
contacts and autism severity; Nature Communications; Vol. 14; 4399;
PMCID PMC10359299; 10.1038/s41467-023-40078-3
- Greenbaum, Shirley; Averbukh, Inna; et el. (2023) A
spatially resolved timeline of the human maternal–fetal interface;
Nature; Vol. 619; No. 7970; 595-605; PMCID PMC10356615; 10.1038/s41586-023-06298-9
- Rouhani, Nina; Stanley, Damian; et el. (2023) Collective
events and individual affect shape autobiographical memory;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 120; No. 29; Art. No. e2221919120; PMCID PMC10629560; 10.1073/pnas.2221919120
- Zhu, Ronghui; Santat, Leah A.; et el. (2023) Reconstitution
of morphogen shuttling circuits; Science Advances; Vol. 9; No. 28;
eadf9336; PMCID PMC10337948; 10.1126/sciadv.adf9336
- LaPorte, Matthew G.; Alverez, Celeste; et el. (2023) Optimization
of 1,2,4-Triazole-Based p97 Inhibitors for the Treatment of Cancer;
ACS Medicinal Chemistry Letters; Vol. 14; No. 7; 977-985; PMCID
PMC10351062; 10.1021/acsmedchemlett.3c00163
- Ninova, Maria; Holmes, Hannah; et el. (2023) Pervasive
SUMOylation of heterochromatin and piRNA pathway proteins; Cell
Genomics; Vol. 3; No. 7; 100329; PMCID PMC10363806; 10.1016/j.xgen.2023.100329
- Srivastava, Vasudha; Hu, Jennifer L.; et el. (2023) Configurational
entropy is an intrinsic driver of tissue structural heterogeneity;
PMCID PMC10327153; 10.1101/2023.07.01.546933
- Hitz, Benjamin C.; Lee, Jin-Wook; et el. (2023) The
ENCODE Uniform Analysis Pipelines; 10.1101/2023.04.04.535623
- Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Daily
SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious
People Due to Viral Load Differences among Specimen Types;
Microbiology Spectrum; Vol. 11; No. 4; e01295-23; PMCID PMC10434058; 10.1128/spectrum.01295-23
- Varshavsky, Alexander; Lewis, Kim; et el. (2023) Deletions
of DNA in cancer and their possible uses for therapy; Bioessays;
Vol. 45; No. 7; e2300051; PMCID PMC11102808; 10.1002/bies.202300051
- Rouressol, Lisa; Briseno, John; et el. (2023) Emergence
of novel genomic regulatory regions associated with light-organ
development in the bobtail squid; iScience; Vol. 26; No. 7; 107091;
PMCID PMC10329180; 10.1016/j.isci.2023.107091
- Kandimalla, Pratyush; Omoto, Jaison Jiro; et el. (2023) Lineages
to circuits: the developmental and evolutionary architecture of
information channels into the central complex; Journal of
Comparative Physiology A; Vol. 209; No. 4; 679-720; PMCID PMC10354165;
10.1007/s00359-023-01616-y
- Morton, James T.; Jin, Dong-Min; et el. (2023) Multi-level
analysis of the gut–brain axis shows autism spectrum disorder-associated
molecular and microbial profiles; Nature Neuroscience; Vol. 26;
No. 7; 1208-1217; PMCID PMC10322709; 10.1038/s41593-023-01361-0
- Cippà, Pietro E. and McMahon, Andrew P. (2023) Proximal
tubule responses to injury: interrogation by single-cell
transcriptomics; Current Opinion in Nephrology & Hypertension;
Vol. 32; No. 4; 352-358; 10.1097/mnh.0000000000000893
- Jiménez Otero, Fernanda; Newman, Dianne K.; et el. (2023) Pyocyanin-dependent
electrochemical inhibition of Pseudomonas aeruginosa biofilms is
synergistic with antibiotic treatment; mBio; Vol. 14; No. 4;
e0070223; PMCID PMC10470778; 10.1128/mbio.00702-23
- Maška, Martin; Ulman, Vladimír; et el. (2023) The
Cell Tracking Challenge: 10 years of objective benchmarking; Nature
Methods; PMCID PMC10333123; 10.1038/s41592-023-01879-y
- Jiang, Jialong; Chen, Sisi; et el. (2023) D-SPIN
constructs gene regulatory network models from multiplexed scRNA-seq
data revealing organizing principles of cellular perturbation
response; PMCID PMC10153191; 10.1101/2023.04.19.537364
- Gorin, Gennady; Vastola, John J.; et el. (2023) Studying
stochastic systems biology of the cell with single-cell genomics
data; PMCID PMC10245677; 10.1101/2023.05.17.541250
- Mao, Runze; Wackelin, Daniel J.; et el. (2023) Enantio-
and Diastereoenriched Enzymatic Synthesis of 1,2,3-Polysubstituted
Cyclopropanes from (Z/E)-Trisubstituted Enol Acetates; PMCID
PMC10120758; 10.21203/rs.3.rs-2802333/v1
- Hahn, Joshua; Monavarfeshani, Aboozar; et el. (2023) Evolution
of neuronal cell classes and types in the vertebrate retina; PMCID
PMC10104162; 10.1101/2023.04.07.536039
- Weatherbee, Bailey A. T.; Gantner, Carlos W.; et el. (2023) Transgene
directed induction of a stem cell-derived human embryo model; 10.1101/2023.06.15.545082
- Weatherbee, Bailey A. T.; Gantner, Carlos W.; et el. (2023) A
model of the post-implantation human embryo derived from pluripotent
stem cells; Nature; 10.1038/s41586-023-06368-y
- Otjacques, Eve; Pissarra, Vasco; et el. (2023) Bioluminescence
in cephalopods: biodiversity, biogeography and research trends;
Frontiers in Marine Science; Vol. 10; Art. No. 1161049; 10.3389/fmars.2023.1161049
- Truong, Lisa; Chen, Yen-Wei; et el. (2023) Single-nucleus
resolution mapping of the adult C. elegans and its application to
elucidate inter- and trans-generational response to alcohol; Cell
Reports; Vol. 42; No. 6; 112535; PMCID PMC10592506; 10.1016/j.celrep.2023.112535
- Li, Yutian; Sarma, Anish A.; et el. (2023) Response
to comment on ‘A conserved strategy for inducing appendage regeneration
in moon jellyfish, Drosophila, and mice’; eLife; Vol. 12; e85370;
PMCID PMC10287153; 10.7554/elife.85370
- Lee, Peter H.; Anaya, Michael; et el. (2023) An
extracellular vesicle targeting ligand that binds to Arc proteins and
facilitates Arc transport in vivo; eLife; Vol. 12; Art. No. e82874;
PMCID PMC10289811; 10.7554/elife.82874
- Tzung, Keh-Weei; Lalonde, Robert L.; et el. (2023) A median
fin derived from the lateral plate mesoderm and the origin of paired
fins; Nature; Vol. 618; No. 7965; 543-549; PMCID PMC10266977; 10.1038/s41586-023-06100-w
- Huang, Huiqian; Joffrin, Amélie M.; et el. (2023) Chondroitin
4-O-sulfation regulates hippocampal perineuronal nets and social
memory; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 120; No. 24; Art. No. e2301312120; PMCID
PMC10268298; 10.1073/pnas.2301312120
- Findlay, Andrew R.; Paing, May M.; et el. (2023) DNAJB6
isoform specific knockdown: Therapeutic potential for limb girdle
muscular dystrophy D1; Molecular Therapy - Nucleic Acids; Vol. 32;
937-948; PMCID PMC10280091; 10.1016/j.omtn.2023.05.017
- Chen, Xinhong; Wolfe, Damien A.; et el. (2023) Functional
gene delivery to and across brain vasculature of systemic AAVs with
endothelial-specific tropism in rodents and broad tropism in
primates; Nature Communications; Vol. 14; Art. No. 3345; PMCID
PMC10250345; 10.1038/s41467-023-38582-7
- Jones, Jeff; MacKrell, Elliot J.; et el. (2023) Tidyproteomics:
an open-source R package and data object for quantitative proteomics
post analysis and visualization; BMC Bioinformatics; Vol. 24; Art.
No. 239; PMCID PMC10246047; 10.1186/s12859-023-05360-7
- Varshavsky, Alexander; Finley, Daniel; et el. (2023) Dieter
Wolf (1941–2023): a life dedicated to understanding protein quality
control and the ubiquitin‐proteasome system; EMBO Journal; Vol. 42;
No. 11; Art. No. e114222; 10.15252/embj.2023114222
- Guan, Charles; Aflalo, Tyson; et el. (2023) Decoding
and geometry of ten finger movements in human posterior parietal cortex
and motor cortex; Journal of Neural Engineering; Vol. 20; No. 3;
Art. No. 036020; 10.1088/1741-2552/acd3b1
- Hung, Shao-Min; Wu, Daw-An; et el. (2023) Extracting
probability in the absence of visual awareness; Cognitive,
Affective, and Behavioral Neuroscience; Vol. 23; No. 3; 620-630; PMCID
PMC10390606; 10.3758/s13415-022-01057-1
- Liu, Liyuan; Wang, Harris H.; et el. (2023) Highly
efficient and rapid generation of genetic variants; Nature Methods;
Vol. 20; No. 6; 795-796; PMCID PMC10158673; 10.1038/s41592-023-01869-0
- Cai, Karena X.; Phan-Minh, Tung; et el. (2023) Rules
of the Road: Formal Guarantees for Autonomous Vehicles With Behavioral
Contract Design; IEEE Transactions on Robotics; Vol. 39; No. 3;
1853-1872; 10.1109/tro.2023.3247951
- Klumpe, Heidi E.; Garcia-Ojalvo, Jordi; et el. (2023) The
computational capabilities of many-to-many protein interaction
networks; Cell Systems; Vol. 14; No. 6; 430-446; PMCID PMC10318606;
10.1016/j.cels.2023.05.001
- Rossiter, John Anthony; Cassandras, Christos G.; et el. (2023) Control
education for societal-scale challenges: A community roadmap; Annual
Reviews in Control; Vol. 55; 1-17; 10.1016/j.arcontrol.2023.03.007
- Xiong, Lingyun; Liu, Jing; et el. (2023) Direct
androgen receptor regulation of sexually dimorphic gene expression in
the mammalian kidney; PMCID PMC10187285; 10.1101/2023.05.06.539585
- Hoffmann, Magnus A. G.; Yang, Zhi; et el. (2023) ESCRT
recruitment to SARS-CoV-2 spike induces virus-like particles that
improve mRNA vaccines; Cell; Vol. 186; No. 11; 2380-2391; PMCID
PMC10121106; 10.1016/j.cell.2023.04.024
- Huang, Biao; Zeng, Zipeng; et el. (2023) Modeling
kidney development, disease, and plasticity with clonal expandable
nephron progenitor cells and nephron organoids; 10.1101/2023.05.25.542343
- Katti, Raj; Arora, Harpreet Singh; et el. (2023) Hot
Carrier Thermalization and Josephson Inductance Thermometry in a
Graphene-Based Microwave Circuit; Nano Letters; Vol. 23; No. 10;
4136-4141; 10.1021/acs.nanolett.2c04791
- Bronner, Marianne (2023) In
the Spotlight—Established researcher [Marianne Bronner]; Journal of
Experimental Zoology Part B; 10.1002/jez.b.23190
- Inglis, Alison J.; Guna, Alina; et el. (2023) Coupled
protein quality control during nonsense-mediated mRNA decay; Journal
of Cell Science; Vol. 136; No. 10; Art. No. jcs261216; PMCID
PMC10234110; 10.1242/jcs.261216
- Chen, Peiwei and Aravin, Alexei A. (2023) Genetic
control of a sex-specific piRNA program; Current Biology; Vol. 33;
No. 9; 1825-1835.e3; PMCID PMC10431932; 10.1016/j.cub.2023.03.057
- Huang, Shan; Wang, Kaihang; et el. (2023) Genome
manipulation by guide-directed Argonaute cleavage; Nucleic Acids
Research; Vol. 51; No. 8; 4078-4085; PMCID PMC10164581; 10.1093/nar/gkad188
- Esyunina, Daria; Okhtienko, Anastasiia; et el. (2023) Specific
targeting of plasmids with Argonaute enables genome editing; Nucleic
Acids Research; Vol. 51; No. 8; 4086-4099; PMCID PMC10164558; 10.1093/nar/gkad191
- Dutka, Przemysław; Metskas, Lauren Ann; et el. (2023) Structure
of Anabaena flos-aquae gas vesicles revealed by cryo-ET; Structure;
Vol. 31; No. 5; 518-528; PMCID PMC10185304; 10.1016/j.str.2023.03.011
- Banerjee, Navonil; Shih, Pei-Yin; et el. (2023) Differential
processing of a chemosensory cue across life stages sharing the same
valence state in Caenorhabditis elegans; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 120; No. 19;
Art. No. e2218023120; PMCID PMC10175840; 10.1073/pnas.2218023120
- Olina, Anna; Agapov, Aleksei; et el. (2023) Bacterial
Argonaute Proteins Aid Cell Division in the Presence of Topoisomerase
Inhibitors in Escherichia coli; Microbiology Spectrum; Vol. 11;
No. 3; Art. No. 04146-22; PMCID PMC10269773; 10.1128/spectrum.04146-22
- Ciemniecki, John A. and Newman, Dianne K. (2023) NADH
dehydrogenases are the predominant phenazine reductases in the electron
transport chain of Pseudomonas aeruginosa; Molecular Microbiology;
Vol. 119; No. 5; 560-573; PMCID PMC11129870; 10.1111/mmi.15049
- Marable, Sierra S. and Bronner, Marianne E. (2023) Reprogramming
of trunk neural crest to a cranial crest-like identity alters their
transcriptome and developmental potential; Differentiation; Vol.
131; 27-37; PMCID PMC10330191; 10.1016/j.diff.2023.04.001
- Lemma, Linnea M.; Varghese, Minu; et el. (2023) Spatio-temporal
patterning of extensile active stresses in microtubule-based active
fluids; PNAS Nexus; Vol. 2; No. 5; Art. No. pgad130; PMCID
PMC10165807; 10.1093/pnasnexus/pgad130
- MacNabb, Brendan W. and Rothenberg, Ellen V. (2023) Speed
and navigation control of thymocyte development by the fetal T-cell gene
regulatory network; Immunological Reviews; Vol. 315; No. 1; 171-196;
PMCID PMC10771342; 10.1111/imr.13190
- Kaplan, Mohammed; Yao, Qing; et el. (2023) Structure
and Assembly of the Proteus mirabilis Flagellar Motor by Cryo-Electron
Tomography; International Journal of Molecular Sciences; Vol. 24;
No. 9; Art. No. 8292; PMCID PMC10179241; 10.3390/ijms24098292
- Walker, Noah B.; Yan, Yijin; et el. (2023) β2
nAChR Activation on VTA DA Neurons Is Sufficient for Nicotine
Reinforcement in Rats; eNeuro; Vol. 10; No. 5; Art.
No. ENEURO.0449-22.2023; PMCID PMC10216253; 10.1523/eneuro.0449-22.2023
- Kong, Qing; Xia, Shiyu; et el. (2023) Alternative
splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis;
Science Immunology; Vol. 8; No. 82; Art. No. eadg3196; PMCID
PMC10338320; 10.1126/sciimmunol.adg3196
- Sarraf, Namita; Rodriguez, Kellen R.; et el. (2023) Modular
reconfiguration of DNA origami assemblies using tile displacement;
Science Robotics; Vol. 8; No. 77; Art. No. adf1511; 10.1126/scirobotics.adf1511
- Jang, Min Jee and Gradinaru, Viviana (2023) Spatial
tropism profiling of AAV vectors by ultrasensitive sequential FISH in
tissue; Nature Biotechnology; PMCID PMC9885914; 10.1038/s41587-023-01681-3
- Rosenthal, Isabelle A.; Bashford, Luke; et el. (2023) S1
represents multisensory contexts and somatotopic locations within and
outside the bounds of the cortical homunculus; Cell Reports; Vol.
42; No. 4; 112312; PMCID PMC10544688; 10.1016/j.celrep.2023.112312
- Marken, John P. and Murray, Richard M. (2023) Addressable
and adaptable intercellular communication via DNA messaging; Nature
Communications; Vol. 14; Art. No. 2358; PMCID PMC10126159; 10.1038/s41467-023-37788-z
- Shay, Timothy F.; Sullivan, Erin E.; et el. (2023) Primate-conserved
carbonic anhydrase IV and murine-restricted LY6C1 enable blood-brain
barrier crossing by engineered viral vectors; Science Advances; Vol.
9; No. 16; Art. No. eadg6618; PMCID PMC10115422; 10.1126/sciadv.adg6618
- Li, Ya-tang and Meister, Markus (2023) Functional
cell types in the mouse superior colliculus; eLife; Vol. 12; Art.
No. e82367; PMCID PMC10121220; 10.7554/elife.82367
- Campos, Lillian J.; Arokiaraj, Cynthia M.; et el. (2023) Advances
in AAV technology for delivering genetically encoded cargo to the
nonhuman primate nervous system; Current Research in Neurobiology;
Vol. 4; Art. No. 100086; PMCID PMC10313870; 10.1016/j.crneur.2023.100086
- Shrock, Ellen L.; Timms, Richard T.; et el. (2023) Germline-encoded
amino acid–binding motifs drive immunodominant public antibody
responses; Science; Vol. 380; No. 6640; Art. No. eadc9498; PMCID
PMC10273302; 10.1126/science.adc9498
- Kreida, Stefan; Narita, Akihiro; et el. (2023) Cryo-EM
structure of the Agrobacterium tumefaciens T4SS-associated T-pilus
reveals stoichiometric protein-phospholipid assembly; Structure;
Vol. 31; No. 4; 385-394; PMCID PMC10168017; 10.1016/j.str.2023.02.005
- Danelius, Emma; Porter, Nicholas J.; et el. (2023) MicroED
Structure of a Protoglobin Reactive Carbene Intermediate; Journal of
the American Chemical Society; Vol. 145; No. 13; 7159-7165; PMCID
PMC10080679; 10.1021/jacs.2c12004
- Schubert, Rajib; Bae, Taegeun; et el. (2023) CRISPR-clear
imaging of melanin-rich B16-derived solid tumors; Communications
Biology; Vol. 6; Art. No. 370; PMCID PMC10073193; 10.1038/s42003-023-04614-7
- McRose, Darcy L.; Liang, Jinyang; et el. (2023) The
chemical ecology of coumarins and phenazines affects iron acquisition by
pseudomonads; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 120; No. 14; Art. No. e2217951120; PMCID
PMC10083548; 10.1073/pnas.2217951120
- Kang, Wei; Burns, John; et el. (2023) Advances
in theoretical and computational nonlinear control — Dedicated to the
80th birthday of Professor Arthur J. Krener; Systems and Control
Letters; Vol. 174; Art. No. 105492; 10.1016/j.sysconle.2023.105492
- Kagan, Jonathan C.; Rothenberg, Ellen V.; et el. (2023) Cold
Spring Harbor Laboratory 2022: emerging insights and viewpoints in
immunology; Trends in Immunology; Vol. 44; No. 4; 248-255; 10.1016/j.it.2023.02.003
- Gerhardt, Louisa M.S.; Koppitch, Kari; et el. (2023) Lineage
Tracing and Single-Nucleus Multiomics Reveal Novel Features of Adaptive
and Maladaptive Repair after Acute Kidney Injury; Journal of the
American Society of Nephrology; Vol. 34; No. 4; 554-571; 10.1681/asn.0000000000000057
- Upchurch, Sean; Palumbo, Emilio; et el. (2023) RNAget:
an API to securely retrieve RNA quantifications; Bioinformatics;
Vol. 39; No. 4; Art. No. btad126; PMCID PMC10081869; 10.1093/bioinformatics/btad126
- Reilly, Douglas K.; Schwarz, Erich M.; et el. (2023) Transcriptomic
profiling of sex-specific olfactory neurons reveals subset-specific
receptor expression in Caenorhabditis elegans; Genetics; Vol. 223;
No. 4; iyad026; PMCID PMC10319972; 10.1093/genetics/iyad026
- Koontz, Alison; Urrutia, Hugo A.; et el. (2023) Making
a head: Neural crest and ectodermal placodes in cranial sensory
development; Seminars in Cell and Developmental Biology; Vol. 138;
15-27; PMCID PMC10224775; 10.1016/j.semcdb.2022.06.009
- Kapasiawala, Manisha and Murray, Richard M. (2023) Probing
metabolism in an E. coli-based cell-free system reveals a trade-off
between transcription and translation; 10.1101/2023.03.22.533877
- Mangenot, Xavier; Xie, Hao; et el. (2023) ²H-²H
clumping in molecular hydrogen method and preliminary results;
Chemical Geology; Vol. 621; Art. No. 121278; 10.1016/j.chemgeo.2022.121278
- Athavale, Soumitra V.; Gao, Shilong; et el. (2023) Enzymatic
Nitrogen Insertion into Unactivated C–H Bonds; 10.26434/chemrxiv-2022-w8sg3
- Bjånes, David A.; Bashford, Luke; et el. (2023) Multi-channel
intra-cortical micro-stimulation yields quick reaction times and evokes
natural somatosensations in a human participant; 10.1101/2022.08.08.22278389
- Fornace, Mark E.; Huang, Jining; et el. (2023) NUPACK:
Analysis and Design of Nucleic Acid Structures, Devices, and
Systems; 10.26434/chemrxiv-2022-xv98l
- Sperling, A. L. and Glover, D. M. (2023) Parthenogenesis
in dipterans: a genetic perspective; Proceedings of the Royal
Society of London. Series B, Biological Sciences; Vol. 290; No. 1995;
Art. No. 20230261; PMCID PMC10031431; 10.1098/rspb.2023.0261
- Calvó-Tusell, Carla; Liu, Zhen; et el. (2023) Reversing
the enantioselectivity of enzymatic carbene N–H insertion through
mechanism-guided protein engineering; 10.26434/chemrxiv-2022-f02xh
- Nichols, Aaron L.; Blumenfeld, Zack; et el. (2023) Selective
Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in
Cytoplasm, Endoplasmic Reticulum, and Membrane; Journal of
Neuroscience; Vol. 43; No. 13; 2222-2241; PMCID PMC10072302; 10.1523/jneurosci.1519-22.2022
- Dutka, Przemysław; Liu, Yuxi; et el. (2023) Structure
and Function of the Dot/Icm T4SS; 10.1101/2023.03.22.533729
- Olina, Anna; Agapov, Aleksei; et el. (2023) Bacterial
Argonaute proteins aid cell division in the presence of topoisomerase
inhibitors in Escherichia coli; 10.1101/2022.09.13.507849
- Pandey, Ayush; Rodriguez, Makena L.; et el. (2023) Characterization
of Integrase and Excisionase Activity in Cell-free Protein Expression
System Using a Modeling and Analysis Pipeline; 10.1101/2022.10.05.511053
- Santorelli, Marco; Bhamidipati, Pranav S.; et el. (2023) Control
of spatio-temporal patterning via cell density in a multicellular
synthetic gene circuit; 10.1101/2022.10.04.510900
- Kreida, Stefan; Narita, Akihiro; et el. (2023) Cryo-EM
structure of the Agrobacterium tumefaciens type IV secretion
system-associated T-pilus reveals stoichiometric protein-phospholipid
assembly; 10.1101/2022.09.25.509369
- Venkei, Zsolt G.; Gainetdinov, Ildar; et el. (2023) Drosophila
Males Use 5′-to-3′ Phased Biogenesis to Make Stellate-silencing piRNAs
that Lack Homology to Maternally Deposited piRNA Guides; 10.1101/2022.09.12.507655
- Jiménez Otero, Fernanda; Newman, Dianne K.; et el. (2023) Electrochemical
disruption of extracellular electron transfer inhibits Pseudomonas
aeruginosa cell survival within biofilms and is synergistic with
antibiotic treatment; 10.1101/2022.09.15.508205
- Schulte, Samuel J.; Huang, Jining; et el. (2023) HCR
Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2
Testing; 10.1101/2022.09.18.508442
- Lisitskaya, Lidiya; Kropocheva, Ekaterina; et el. (2023) Bacterial
Argonaute nucleases reveal different modes of DNA targeting in vitro and
in vivo; 10.1101/2022.09.09.507302
- Gristick, Harry B.; Hartweger, Harald; et el. (2023) CD4-binding
site immunogens elicit heterologous anti-HIV-1 neutralizing antibodies
in transgenic and wildtype animals; 10.1101/2022.09.08.507086
- Fenelon, Kelli D.; Gao, Fan; et el. (2023) Cell-specific
occupancy dynamics between the pioneer-like factor Opa/ZIC and
Ocelliless/OTX regulate early head development in embryos; Frontiers
in Cell and Developmental Biology; Vol. 11; Art. No. 1126507; PMCID
PMC10083704; 10.3389/fcell.2023.1126507
- Boltje, Daan B.; Hoogenboom, Jacob P.; et el. (2023) A
cryogenic, coincident fluorescence, electron and ion beam
microscope; 10.1101/2022.09.02.506334
- Aflalo, Tyson; Chivukula, Srinivas; et el. (2023) Cognition
through internal models: Mirror neurons as one manifestation of a
broader mechanism; 10.1101/2022.09.06.506071
- Brugman, Katherine I.; Susoy, Vladislav; et el. (2023) PEZO-1
and TRP-4 mechanosensors are involved in mating behavior in
Caenorhabditis elegans; 10.1101/2022.08.31.506045
- Rosenthal, Isabelle A.; Bashford, Luke; et el. (2023) S1
represents multisensory contexts and somatotopic locations within and
outside the bounds of the cortical homunculus; 10.1101/2022.08.29.505313
- Kaplan, Mohammed; Shepherd, Doulin C.; et el. (2023) Structural
remodeling of Coxiella burnetii during its biphasic developmental cycle
revealed by cryo-electron tomography; 10.1101/2022.08.23.505044
- Shimojo, Kensuke; Shimojo, Eiko; et el. (2023) Preservation
of Conditioned Behavior Based on UV Light Sensitivity in Dissected Tail
Halves of Planarians- a Proof by DNN; 10.1101/2022.10.30.514395
- Braet, Sean M.; Buckley, Theresa S. C.; et el. (2023) Timeline
of changes in spike conformational dynamics in emergent SARS-CoV-2
variants reveal progressive stabilization of trimer stalk and enhanced
NTD dynamics; 10.1101/2022.08.26.505369
- Sullivan, Delaney K. and Pachter, Lior (2023) Flexible
parsing and preprocessing of technical sequences with splitcode;
PMCID PMC10055216; 10.1101/2023.03.20.533521
- Chen, Peiwei and Aravin, Alexei A. (2023) Genetic
control of a sex-specific piRNA program; 10.1101/2022.10.25.513766
- Booeshaghi, A. Sina; Chen, Xi; et el. (2023) A
machine-readable specification for genomics assays; 10.1101/2023.03.17.533215
- Stevens, Taylor Anthony; Pinton Tomaleri, Giovani; et el. (2023) A
nanobody-based strategy for rapid and scalable purification of native
human protein complexes; 10.1101/2023.03.09.531980
- Afik, Eldad; Liu, Toni J. B.; et el. (2023) Dynamical
states of self-organized waves in a giant single-celled organism feeding
on light; 10.1101/2023.02.22.529174
- Bernardi, Yanel E.; Sanchez-Vasquez, Estefania; et el. (2023) Extracellular
vesicle-localized miR-203 mediates neural crest-placode communication
required for trigeminal ganglia formation; 10.1101/2023.03.14.532527
- Fry, Michelle Y.; Navarro, Paula P.; et el. (2023) In
situ architecture of Opa1-dependent mitochondrial cristae
remodeling; 10.1101/2023.01.16.524176
- Danelius, Emma; Porter, Nicholas J.; et el. (2023) MicroED
structure of a protoglobin reactive carbene intermediate; 10.1101/2022.10.18.512604
- Hills, Rory A.; Tan, Tiong Kit; et el. (2023) Multiviral
Quartet Nanocages Elicit Broad Anti-Coronavirus Responses for Proactive
Vaccinology; PMCID PMC9980174; 10.1101/2023.02.24.529520
- Booeshaghi, A. Sina; Min, Kyung Hoi (Joseph); et el. (2023) Quantifying
orthogonal barcodes for sequence census assays; 10.1101/2022.10.09.511501
- Yang, Jie-Yoon; O’Connell, Thomas F.; et el. (2023) Restructuring
of olfactory representations in the fly brain around odor relationships
in natural sources; 10.1101/2023.02.15.528627
- Gorin, Gennady; Yoshida, Shawn; et el. (2023) Transient
and delay chemical master equations; 10.1101/2022.10.17.512599
- Tan, Chieh-Hsiang; Cheng, Kai-Wen; et el. (2023) LINKIN-associated
proteins necessary for tissue integrity during collective cell
migration; 10.1101/2023.02.08.527750
- Santos, Inês B.; Wainman, Alan; et el. (2023) Mob4
is essential for spermatogenesis in Drosophila melanogaster; 10.1101/2023.02.05.527206
- Wang, Grace Z.; Warren, Elizabeth A.; et el. (2023) Staphylococcal
secreted cytotoxins are competition sensing signals for Pseudomonas
aeruginosa; 10.1101/2023.01.29.526047
- Guna, Alina; Page, Katharine R.; et el. (2023) A
dual sgRNA library design to probe genetic modifiers using genome-wide
CRISPRi screens; PMCID PMC9882262; 10.1101/2023.01.22.525086
- Choe, Mangyu; Einav, Tal; et el. (2023) Data-driven
model of glycolysis identifies the role of allostery in maintaining ATP
homeostasis; 10.1101/2022.12.28.522046
- Haloi, Nandan; Huang, Shan; et el. (2023) Interactive
computational and experimental approaches improve the sensitivity of
periplasmic binding protein-based nicotine biosensors for measurements
in biofluids; 10.1101/2023.01.16.524298
- Dam, Kim-Marie A.; Fan, Chengcheng; et el. (2023) Structural
characterization of HIV-1 Env heterotrimers bound to one or two CD4
receptors reveals intermediate Env conformations; 10.1101/2023.01.27.525985
- Gorin, Gennady and Pachter, Lior (2023) The
telegraph process is not a subordinator; 10.1101/2023.01.17.524309
- Bhat, Prashant; Chow, Amy; et el. (2023) 3D
genome organization around nuclear speckles drives mRNA splicing
efficiency; 10.1101/2023.01.04.522632
- Fenelon, Kelli D.; Gao, Fan; et el. (2023) Cell-specific
occupancy dynamics between the pioneer-like factor Opa/ZIC and
Ocelliles/OTX regulate early head development in embryos; 10.1101/2022.12.15.519123
- Yamoune, Amel; Zdarska, Marketa; et el. (2023) Cytokinins
regulate spatially-specific ethylene production to control root growth
in Arabidopsis; 10.1101/2023.01.07.522790
- Kahan, Anat; Coughlin, Gerard M.; et el. (2023) Dysregulated
mammalian estrus cycle rescued by timed activation of VIP neurons in the
circadian pacemaker and late afternoon light exposure; 10.1101/2023.01.14.524075
- Hoffmann, Magnus A. G.; Yang, Zhi; et el. (2023) ESCRT
recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like
particles and enhanced antibody responses; PMCID PMC9810232; 10.1101/2022.12.26.521940
- Dylla, Kristina V.; O’Connell, Thomas F.; et el. (2023) Early
life experience with natural odors modifies olfactory behavior through
an associative process; 10.1101/2023.01.08.523155
- Ding, Xiaozhe; Chen, Xinhong; et el. (2023) Fast,
accurate ranking of engineered proteins by receptor binding propensity
using structural modeling; 10.1101/2023.01.11.523680
- Chen, Xinhong; Wolfe, Damien A.; et el. (2023) Functional
gene delivery to and across brain vasculature of systemic AAVs with
endothelial-specific tropism in rodents and broad tropism in
primates; 10.1101/2023.01.12.523844
- Carilli, Maria; Gorin, Gennady; et el. (2023) Mechanistic
modeling with a variational autoencoder for multimodal single-cell RNA
sequencing data; 10.1101/2023.01.13.523995
- Shay, Timothy F.; Sullivan, Erin E.; et el. (2023) Primate-conserved
Carbonic Anhydrase IV and murine-restricted Ly6c1 are new targets for
crossing the blood-brain barrier; 10.1101/2023.01.12.523632
- De Jonghe, Joachim; Kaminski, Tomasz S.; et el. (2023) spinDrop:
a droplet microfluidic platform to maximise single-cell sequencing
information content; 10.1101/2023.01.12.523500
- Sockell, Alexandra; Wong, Wing; et el. (2023) A
microwell platform for high-throughput longitudinal phenotyping and
selective retrieval of organoids; 10.1101/2022.11.01.514733
- Pleiner, Tino; Hazu, Masami; et el. (2023) A
selectivity filter in the EMC limits protein mislocalization to the
ER; 10.1101/2022.11.29.518402
- Hjorleifsson, Kristján Eldjárn; Sullivan, Delaney K.; et el. (2023)
Accurate
quantification of single-nucleus and single-cell RNA-seq
transcripts; 10.1101/2022.12.02.518832
- Marken, John P. and Murray, Richard M. (2023) Addressable
and adaptable intercellular communication via DNA messaging; 10.1101/2022.11.17.516988
- Hjorleifsson, Kristján Eldjárn; Pachter, Lior; et el. (2023) Annotation-agnostic
discovery of associations between novel gene isoforms and
phenotypes; 10.1101/2022.12.02.518787
- Findlay, Andrew R.; Paing, May M.; et el. (2023) DNAJB6
Isoform Specific Knockdown: Therapeutic Potential for LGMDD1; 10.1101/2022.11.17.516920
- Griggs, Whitney S.; Norman, Sumner L.; et el. (2023) Decoding
Motor Plans Using a Closed-Loop Ultrasonic Brain-Machine Interface;
10.1101/2022.11.10.515371
- Spolski, Rosanne; Li, Peng; et el. (2023) Distinct
super-enhancer elements differentially control Il2ra gene expression in
a cell-type specific fashion; 10.1101/2022.11.18.516445
- Baltimore, David (2023) Paul
Berg (1926–2023) Father of genetic engineering; Science; Vol. 379;
No. 6637; 1095; 10.1126/science.adh2943
- Murali, Ranjani; Yu, Hang; et el. (2023) Physiological
adaptation of sulfate reducing bacteria in syntrophic partnership with
anaerobic methanotrophic archaea; 10.1101/2022.11.23.517749
- Palmer, Emily H.; Omoto, Jaison J.; et el. (2023) The
role of a population of descending neurons in the optomotor response in
flying Drosophila; 10.1101/2022.12.05.519224
- Braet, Sean M.; Buckley, Theresa S. C.; et el. (2023) Timeline
of changes in spike conformational dynamics in emergent SARS-CoV-2
variants reveal progressive stabilization of trimer stalk with altered
NTD dynamics; eLife; Vol. 12; Art. No. e82584; PMCID PMC10049203; 10.7554/elife.82584
- Akella, Prithvi; Ahmadi, Mohamadreza; et el. (2023) Barrier-Based
Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid
Specifications
- Le Guerroué, François; Bunker, Eric N.; et el. (2023) TNIP1
inhibits selective autophagy via bipartite interaction with LC3/GABARAP
and TAX1BP1; Molecular Cell; Vol. 83; No. 6; 927-941.e8; PMCID
PMC10112281; 10.1016/j.molcel.2023.02.023
- Cabeen, Ryan P.; Toga, Arthur W.; et el. (2023) Mapping
frontoinsular cortex from diffusion microstructure; Cerebral Cortex;
Vol. 33; No. 6; 2715-2733; PMCID PMC10016069; 10.1093/cercor/bhac237
- Rosencrans, William M. and Chan, David C. (2023) Fusion
activators enhance mitochondrial function; Mitochondrial
Communications; Vol. 1; 33-34; PMCID PMC10956541; 10.1016/j.mitoco.2023.03.001
- Schulte, Samuel J.; Huang, Jining; et el. (2023) Hybridization
Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home
SARS-CoV-2 Testing; ACS Infectious Diseases; Vol. 9; No. 3; 450-458;
PMCID PMC9924079; 10.1021/acsinfecdis.2c00472
- Ji, Jenny; Winnett, Alexander Viloria; et el. (2023) Index
Cases First Identified by Nasal-Swab Rapid COVID-19 Tests Had More
Transmission to Household Contacts Than Cases Identified by Other Test
Types; 10.1101/2023.03.09.23286855
- Mattick, John S.; Amaral, Paulo P.; et el. (2023) Long
non-coding RNAs: definitions, functions, challenges and
recommendations; Nature Reviews Molecular Cell Biology; Vol. 24;
No. 6; 430-447; PMCID PMC10213152; 10.1038/s41580-022-00566-8
- Arakaki, Xianghong; Arechavala, Rebecca J.; et el. (2023) The
connection between heart rate variability (HRV), neurological health,
and cognition: A literature review; Frontiers in Neuroscience; Vol.
17; Art. No. 1055445; PMCID PMC10014754; 10.3389/fnins.2023.1055445
- Guna, Alina; Hazu, Masami; et el. (2023) A
TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic
Reticulum; Cold Spring Harbor Perspectives in Biology; Vol. 15;
No. 3; Art. No. a041252; PMCID PMC9979854; 10.1101/cshperspect.a041252
- Liang, William; Guo, Hongsun; et el. (2023) Auditory
Mondrian masks the airborne-auditory artifact of focused ultrasound
stimulation in humans; Brain Stimulation; Vol. 16; No. 2; 604-606;
PMCID PMC10314733; 10.1016/j.brs.2023.03.002
- Scott, Ryan T.; Sanders, Lauren M.; et el. (2023) Biomonitoring
and precision health in deep space supported by artificial
intelligence; Nature Machine Intelligence; Vol. 5; No. 3; 196-207;
10.1038/s42256-023-00617-5
- Winnett, Alexander Viloria; Akana, Reid; et el. (2023) Extreme
differences in SARS-CoV-2 viral loads among respiratory specimen types
during presumed pre-infectious and infectious periods; PNAS Nexus;
Vol. 2; No. 3; pgad033; PMCID PMC10013338; 10.1093/pnasnexus/pgad033
- Boktor, Joseph C.; Sharon, Gil; et el. (2023) Integrated
Multi‐Cohort Analysis of the Parkinson’s Disease Gut Metagenome;
Movement Disorders; Vol. 38; No. 3; 399-409; 10.1002/mds.29300
- Holman, Elizabeth A.; Krishnan, Harinarayan; et el. (2023) Toward
implementing autonomous adaptive data acquisition for scanning
hyperspectral imaging of biological systems; Applied Physics
Reviews; Vol. 10; No. 1; Art. No. 011319; 10.1063/5.0123278
- Cable, Jennifer; Balachandran, Siddharth; et el. (2023) Viral
immunity: Basic mechanisms and therapeutic applications—a Keystone
Symposia report; Annals of the New York Academy of Sciences; Vol.
1521; No. 1; 32-45; 10.1111/nyas.14960
- Mehrotra, Pihu; Ikhapoh, Izuagie; et el. (2023) Wnt/BMP
Mediated Metabolic Reprogramming Preserves Multipotency of Neural
Crest-Like Stem Cells; Stem Cells; Vol. 41; No. 3; 287-305; PMCID
PMC10020983; 10.1093/stmcls/sxad001
- Guna, Alina; Stevens, Taylor A.; et el. (2023) MTCH2
is a mitochondrial outer membrane protein insertase; 10.1101/2022.09.15.508165
- Wandelt, Sarah K.; Bjånes, David A.; et el. (2023) Online
internal speech decoding from single neurons in a human participant;
10.1101/2022.11.02.22281775
- Ma, Dingbang; Herndon, Nicholas; et el. (2023) Neural
connectivity molecules best identify the heterogeneous clock and
dopaminergic cell types in the Drosophila adult brain; Science
Advances; Vol. 9; No. 8; Art. No. eade8500; PMCID PMC9946362; 10.1126/sciadv.ade8500
- Gristick, Harry B.; Hartweger, Harald; et el. (2023) CD4
binding site immunogens elicit heterologous anti–HIV-1 neutralizing
antibodies in transgenic and wild-type animals; Science Immunology;
Vol. 8; No. 80; eade6364; PMCID PMC10202037; 10.1126/sciimmunol.ade6364
- Pandey, Ayush; Rodriguez, Makena L.; et el. (2023) Characterization
of Integrase and Excisionase Activity in a Cell-Free Protein Expression
System Using a Modeling and Analysis Pipeline; ACS Synthetic
Biology; Vol. 12; No. 2; 511-523; 10.1021/acssynbio.2c00534
- Zhang, Juner; Maggiolo, Ailiena O.; et el. (2023) Chemodivergent
C(sp³)–H and C(sp²)–H cyanomethylation using engineered carbene
transferases; Nature Catalysis; Vol. 6; No. 2; 152-160; PMCID
PMC9983643; 10.1038/s41929-022-00908-x
- Banks, Rachel A.; Galstyan, Vahe; et el. (2023) Motor
processivity and speed determine structure and dynamics of
microtubule-motor assemblies; eLife; Vol. 12; Art. No. e79402; PMCID
PMC10014072; 10.7554/elife.79402
- Trautmann, Eric M.; Hesse, Janis K.; et el. (2023) Large-scale
brain-wide neural recording in nonhuman primates; 10.1101/2023.02.01.526664
- Rusch, Tessa; Han, Yanting; et el. (2023) COVID-Dynamic: a
large-scale longitudinal study of socioemotional and behavioral change
across the pandemic; Scientific Data; Vol. 10; Art. No. 71; PMCID
PMC9897616; 10.1038/s41597-022-01901-6
- Thomson, Matt (2023) Spin
glasses, error correcting codes, and synchronization of human stem cell
organoids; Cell; Vol. 186; No. 3; 461-463; 10.1016/j.cell.2023.01.006
- Laso-Pérez, Rafael; Wu, Fabai; et el. (2023) Evolutionary
diversification of methanotrophic ANME-1 archaea and their expansive
virome; Nature Microbiology; Vol. 8; No. 2; 231-245; PMCID
PMC9894754; 10.1038/s41564-022-01297-4
- Pollak, Daniel J.; Chawla, Gautam; et el. (2023) First
steps into the cloud: Using Amazon data storage and computing with
Python notebooks; PLoS ONE; Vol. 18; No. 2; Art. No. e0278316; PMCID
PMC9910747; 10.1371/journal.pone.0278316
- Apostolou, Effie; Blau, Helen; et el. (2023) Progress
and challenges in stem cell biology; Nature Cell Biology; Vol. 25;
No. 2; 203-206; 10.1038/s41556-023-01087-y
- Shin, Boyoung and Rothenberg, Ellen V. (2023) Multi-modular
structure of the gene regulatory network for specification and
commitment of murine T cells; Frontiers in Immunology; Vol. 14; Art.
No. 1108368; PMCID PMC9928580; 10.3389/fimmu.2023.1108368
- Carter, Alyssa M.; Winnett, Alexander Viloria; et el. (2023) Laboratory
Evaluation Links Some False-Positive COVID-19 Antigen Test Results
Observed in a Field Study to a Specific Lot of Test Strips; Open
Forum Infectious Diseases; Vol. 10; No. 1; Art. No. ofac701; PMCID
PMC9887260; 10.1093/ofid/ofac701
- Lin, Chujun and Adolphs, Ralph (2023) Trait
impressions from faces depend on the goals of the perceiver; British
Journal of Psychology; 10.1111/bjop.12618
- Schaus, Lucas; Das, Anuvab; et el. (2023) Protoglobin-Catalyzed
Formation of cis-Trifluoromethyl-Substituted Cyclopropanes by Carbene
Transfer; Angewandte Chemie International Edition; Vol. 62; No. 4;
Art. No. e202208936; PMCID PMC9894577; 10.1002/anie.202208936
- Huang, Kuan-Ying A.; Chen, Xiaorui; et el. (2023) Structural
basis for a conserved neutralization epitope on the receptor-binding
domain of SARS-CoV-2; Nature Communications; Vol. 14; Art. No. 311;
PMCID PMC9852238; 10.1038/s41467-023-35949-8
- Sohn, Won Joon; Lim, Jeffrey; et el. (2023) Benchtop
and bedside validation of a low-cost programmable cortical stimulator in
a testbed for bi-directional brain-computer-interface research;
Frontiers in Neuroscience; Vol. 16; Art. No. 1075971; PMCID PMC9878125;
10.3389/fnins.2022.1075971
- Earley, Zachary M.; Lisicka, Wioletta; et el. (2023) GATA4
controls regionalization of tissue immunity and commensal-driven
immunopathology; Immunity; Vol. 56; No. 1; 43-57.e10; 10.1016/j.immuni.2022.12.009
- Meyerowitz, Elliot M. (2023) Elliot
M. Meyerowitz; Current Biology; Vol. 33; No. 1; R4-R6; 10.1016/j.cub.2022.11.040
- Ousey, James; Boktor, Joseph C.; et el. (2023) Gut
microbiota suppress feeding induced by palatable foods; Current
Biology; Vol. 33; No. 1; 147-157.e7; PMCID PMC9839363; 10.1016/j.cub.2022.10.066
- Nair, Aditya; Karigo, Tomomi; et el. (2023) An
approximate line attractor in the hypothalamus encodes an aggressive
state; Cell; Vol. 186; No. 1; 178-193; PMCID PMC9990527; 10.1016/j.cell.2022.11.027
- Utter, D. R. and Orphan, V. J. (2023) Gifts
hidden in shadowy genome islands; Cell; Vol. 186; No. 1; 5-7; 10.1016/j.cell.2022.12.001
- Luebbert, Laura and Pachter, Lior (2023) Efficient
querying of genomic reference databases with gget; Bioinformatics;
Vol. 39; No. 1; Art. No. btac836; PMCID PMC9835474; 10.1093/bioinformatics/btac836
- Murata, Daisuke; Grunseich, Christopher; et el. (2023) A
Heterozygous Mutation in MFF Associated with a Mild Mitochondrial
Phenotype; Journal of Neuromuscular Diseases; Vol. 10; No. 1;
107-118; 10.3233/jnd-221532
- Amadei, Gianluca and Glover, David M. (2023) Behind
the developing brains and beating hearts of stem cell-derived embryo
models; Open Biology; Vol. 13; No. 1; Art. No. rsob.220325; PMCID
PMC9833437; 10.1098/rsob.220325
- Gálvez-Merchán, Ángel; Min, Kyung Hoi (Joseph); et el. (2023) Metadata
retrieval from sequence databases with ffq; Bioinformatics; Vol. 39;
No. 1; Art. No. btac667; PMCID PMC9883619; 10.1093/bioinformatics/btac667
- Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Antibody
Recognition of CD4-Induced Open HIV-1 Env Trimers; Journal of
Virology; Vol. 96; No. 24; e0108222; PMCID PMC9769388; 10.1128/jvi.01082-22
- Winnett, Alexander Viloria; Porter, Michael K.; et el. (2022) Morning
SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher
Viral Loads in Saliva and Nasal Swabs upon Waking; Microbiology
Spectrum; Vol. 10; No. 6; e03873-22; PMCID PMC9769854; 10.1128/spectrum.03873-22
- Badithela, Apurva; Graebener, Josefine B.; et el. (2022) Synthesizing
Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid
Specifications with Multi-Commodity Flows; 10.48550/arXiv.2210.10304
- Cabrera, Alan; Edelstein, Hailey I.; et el. (2022) The
sound of silence: Transgene silencing in mammalian cell engineering;
Cell Systems; Vol. 13; No. 12; 950-973; PMCID PMC9880859; 10.1016/j.cels.2022.11.005
- Badithela, Apurva; Wongpiromsarn, Tichakorn; et el. (2022) Evaluation
Metrics for Object Detection for Autonomous Systems; 10.48550/arXiv.2210.10298
- Han, SooJean; Effros, Michelle; et el. (2022) OUTformation:
Distributed Data-Gathering with Feedback under Unknown Environment and
Communication Delay Constraints; 10.48550/arXiv.2208.06395
- Flamholz, Avi I.; Saccomano, Samuel; et el. (2022) Optical
O₂ Sensors Also Respond to Redox Active Molecules Commonly Secreted by
Bacteria; mBio; Vol. 13; No. 6; Art. No. e0207622; PMCID PMC9765510;
10.1128/mbio.02076-22
- Wilbert, Steven A. and Newman, Dianne K. (2022) The
contrasting roles of nitric oxide drive microbial community organization
as a function of oxygen presence; Current Biology; Vol. 32; No. 24;
5221-5234.e4; PMCID PMC9772256; 10.1016/j.cub.2022.10.008
- Lin, Lizhu; Pinto, Antonella; et el. (2022) ETS1
loss in mice impairs cardiac outflow tract septation via a cell
migration defect autonomous to the neural crest; Human Molecular
Genetics; Vol. 31; No. 24; 4217-4227; PMCID PMC10148727; 10.1093/hmg/ddac174
- Whitehead, Samuel C.; Leone, Sofia; et el. (2022) Neuromuscular
embodiment of feedback control elements in Drosophila flight;
Science Advances; Vol. 8; No. 50; Art. No. eabo7461; PMCID PMC9750141;
10.1126/sciadv.abo7461
- Hay, Bruce A. and Guo, Ming (2022) Gene
drive-mediated population elimination for biodiversity conservation.
When you come to a fork in the road, take it; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 119;
No. 51; Art. No. e2218020119; PMCID PMC9907123; 10.1073/pnas.2218020119
- Fan, Chengcheng; Cohen, Alexander A.; et el. (2022) Neutralizing
monoclonal antibodies elicited by mosaic RBD nanoparticles bind
conserved sarbecovirus epitopes; Immunity; Vol. 55; No. 12;
2419-2435.e10; PMCID PMC9606073; 10.1016/j.immuni.2022.10.019
- Piacentino, Michael L.; Hutchins, Erica J.; et el. (2022) Temporal
changes in plasma membrane lipid content induce endocytosis to regulate
developmental epithelial-to-mesenchymal transition; Proceedings of
the National Academy of Sciences of the United States of America; Vol.
119; No. 51; Art. No. e2212879119; PMCID PMC9907157; 10.1073/pnas.2212879119
- Guan, Charles; Aflalo, Tyson; et el. (2022) Compositional
coding of individual finger movements in human posterior parietal cortex
and motor cortex enables ten-finger decoding; 10.1101/2022.12.07.22283227
- Gorin, Gennady; Vastola, John J.; et el. (2022) Interpretable
and tractable models of transcriptional noise for the rational design of
single-molecule quantification experiments; Nature Communications;
Vol. 13; Art. No. 7620; PMCID PMC9734650; 10.1038/s41467-022-34857-7
- Nicolas, William J.; Jensen, Grant J.; et el. (2022) Focused
Ion Beam Milling and Cryo-electron Tomography Methods to Study the
Structure of the Primary Cell Wall in Allium cepa; Bio-protocol;
Vol. 12; No. 23; Art. No. e4559; PMCID PMC9729855; 10.21769/bioprotoc.4559
- Saltoun, Karin; Adolphs, Ralph; et el. (2022) Dissociable
brain structural asymmetry patterns reveal unique phenome-wide
profiles; Nature Human Behaviour; 10.1038/s41562-022-01461-0
- Boktor, Joseph C.; Adame, Mark D.; et el. (2022) Global
metabolic profiles in a non-human primate model of maternal immune
activation: implications for neurodevelopmental disorders; Molecular
Psychiatry; Vol. 27; No. 12; 4959-4973; PMCID PMC9772216; 10.1038/s41380-022-01752-y
- Schweikert, Christina; Shimojo, Shinsuke; et el. (2022) Modeling
Prototypical Preference Behavior and Diversity using Rank Score
Characteristic Functions; ISBN 978-1-6654-9084-9; 2022 IEEE 21st
International Conference on Cognitive Informatics & Cognitive
Computing (ICCI*CC); IEEE: Piscataway, NJ; 203-207; 10.1109/iccicc57084.2022.10101519
- Alfonzo, Edwin; Das, Anuvab; et el. (2022) New
additions to the arsenal of biocatalysts for noncanonical amino acid
synthesis; Current Opinion in Green and Sustainable Chemistry; Vol.
38; Art. No. 100701; PMCID PMC9770695; 10.1016/j.cogsc.2022.100701
- Barnum, George and Hong, Elizabeth J. (2022) Olfactory
coding; Current Biology; Vol. 32; No. 23; R1296-R1301; 10.1016/j.cub.2022.10.067
- Wang, Sheng; Garcia-Ojalvo, Jordi; et el. (2022) Periodic
spatial patterning with a single morphogen; Cell Systems; Vol. 13;
No. 12; 1033-1047.e7; 10.1016/j.cels.2022.11.001
- Petrovic, Stefan; Mobbs, George W.; et el. (2022) Structure
and Function of the Nuclear Pore Complex; Cold Spring Harbor
Perspectives in Biology; Vol. 14; No. 12; Art. No. a041264; 10.1101/cshperspect.a041264
- Parker, Joseph (2022) The
bank most tangled [book review]; Current Biology; Vol. 32; No. 24;
R1328-R1330; 10.1016/j.cub.2022.10.023
- Goronzy, Isabel N.; Quinodoz, Sofia A.; et el. (2022) Simultaneous
mapping of 3D structure and nascent RNAs argues against nuclear
compartments that preclude transcription; Cell Reports; Vol. 41;
No. 9; Art. No. 111730; PMCID PMC9793828; 10.1016/j.celrep.2022.111730
- Zhang, Juner; Maggiolo, Ailiena O.; et el. (2022) Chemodivergent
C(sp³)–H and C(sp²)–H Cyanomethylation Using Engineered Carbene
Transferases; 10.26434/chemrxiv-2022-z6pkw
- Shin, Boyoung; Zhou, Wen; et el. (2022) Runx
factors launch T cell and innate lymphoid programs via direct and gene
network-based mechanisms; 10.1101/2022.11.18.517146
- Kovacs, Levente; Fatalska, Agnieszka; et el. (2022) Targeting
Drosophila Sas6 to mitochondria reveals its high affinity for Gorab;
Biology Open; Vol. 11; No. 11; Art. No. bio059545; PMCID PMC9836085; 10.1242/bio.059545
- Williams, Rory L. and Murray, Richard M. (2022) Integrase-mediated
differentiation circuits improve evolutionary stability of burdensome
and toxic functions in E. coli; Nature Communications; Vol. 13; Art.
No. 6822; PMCID PMC9649629; 10.1038/s41467-022-34361-y
- Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et el. (2022) A
prebiotic diet modulates microglial states and motor deficits in
α-synuclein overexpressing mice; eLife; Vol. 11; Art. No. e81453;
PMCID PMC9668333; 10.7554/elife.81453
- Suresh, Pooja; Galstyan, Vahe; et el. (2022) Modeling
and mechanical perturbations reveal how spatially regulated anchorage
gives rise to spatially distinct mechanics across the mammalian
spindle; eLife; Vol. 11; Art. No. e79558; PMCID PMC9642996; 10.7554/elife.79558
- Endo, Fumito; Kasai, Atsushi; et el. (2022) Molecular
basis of astrocyte diversity and morphology across the CNS in health and
disease; Science; Vol. 378; No. 6619; Art. No. adc9020; 10.1126/science.adc9020
- McGlynn, Shawn Erin; Perkins, Guy; et el. (2022) A
Cristae-Like Microcompartment in Desulfobacterota; mBio; Vol. 13;
No. 6; Art. No. 01613-22; PMCID PMC9764997; 10.1128/mbio.01613-22
- Foy, Susan; Jacoby, Kyle; et el. (2022) 1478 A
phase I study of personalized adoptive TCR T cell therapy in patients
with solid tumors: safety, efficacy, and T cell trafficking to tumors of
non-virally gene edited T cells; Journal for ImmunoTherapy of
Cancer; Vol. 10; No. S2; A1536; 10.1136/jitc-2022-sitc2022.1478
- Bokhari, Rihana S.; Beheshti, Afshin; et el. (2022) Looking
on the Horizon; Potential and Unique Approaches to Developing Radiation
Countermeasures for Deep Space Travel; Life Sciences in Space
Research; Vol. 35; 105-112; 10.1016/j.lssr.2022.08.003
- Brugman, Katherine I.; Susoy, Vladislav; et el. (2022) PEZO-1
and TRP-4 mechanosensors are involved in mating behavior in
Caenorhabditis elegans; PNAS Nexus; Vol. 1; No. 5; Art. No. pgac213;
PMCID PMC9802279; 10.1093/pnasnexus/pgac213
- Rothenberg, Ellen V. (2022) Transcription
factors specifically control change; Genes and Development; Vol. 36;
No. 21-24; 1097-1099; PMCID PMC9851400; 10.1101/gad.350308.122
- Boltje, Daan B.; Hoogenboom, Jacob P.; et el. (2022) A
cryogenic, coincident fluorescence, electron, and ion beam
microscope; eLife; Vol. 11; Art. No. e82891; PMCID PMC9714966; 10.7554/elife.82891
- Vijayan, Vikram; Wang, Zikun; et el. (2022) An
internal expectation guides Drosophila egg-laying decisions; Science
Advances; Vol. 8; No. 43; eabn3852; 10.1126/sciadv.abn3852
- Guna, Alina; Stevens, Taylor A.; et el. (2022) MTCH2
is a mitochondrial outer membrane protein insertase; Science; Vol.
378; No. 6617; 317-322; PMCID PMC9674023; 10.1126/science.add1856
- Athavale, Soumitra V.; Gao, Shilong; et el. (2022) Enzymatic
Nitrogen Insertion into Unactivated C-H Bonds; Journal of the
American Chemical Society; Vol. 144; No. 41; 19097-19105; PMCID
PMC9612832; 10.1021/jacs.2c08285
- Metskas, Lauren Ann; Wilfong, Rosalie; et el. (2022) Subtomogram
averaging for biophysical analysis and supramolecular context;
Journal of Structural Biology: X; Vol. 6; Art. No. 100076; PMCID
PMC9596874; 10.1016/j.yjsbx.2022.100076
- Dam, Kim-Marie A.; Barnes, Christopher O.; et el. (2022) HIV-1
CD4-binding site germline antibody-Env structures inform vaccine
design; Nature Communications; Vol. 13; Art. No. 6123; PMCID
PMC9576718; 10.1038/s41467-022-33860-2
- Zocchi, Dhruv; Ye, Emily S.; et el. (2022) Parallel
encoding of CO₂ in attractive and aversive glomeruli by selective
lateral signaling between olfactory afferents; Current Biology; Vol.
32; No. 19; 4225-4239.e7; PMCID PMC9561050; 10.1016/j.cub.2022.08.025
- Amadei, Gianluca; Handford, Charlotte E.; et el. (2022) Embryo model
completes gastrulation to neurulation and organogenesis; Nature;
Vol. 610; No. 7930; 143-153; PMCID PMC9534772; 10.1038/s41586-022-05246-3
- Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse
embryo model derived exclusively from embryonic stem cells undergoes
neurulation and heart development; Cell Stem Cell; Vol. 29; No. 10;
1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
- Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse
embryo model derived exclusively from embryonic stem cells undergoes
neurulation and heart development; Cell Stem Cell; Vol. 29; No. 10;
1445-1458.e8; PMCID PMC9648694; 10.1016/j.stem.2022.08.013
- Puskar, Ryan; Du Truong, Chloe; et el. (2022) Molecular
asymmetry of a photosynthetic supercomplex from green sulfur
bacteria; Nature Communications; Vol. 13; Art. No. 5824; PMCID
PMC9529944; 10.1038/s41467-022-33505-4
- Hutchins, Erica J.; Gandhi, Shashank; et el. (2022) RNA-binding
protein Elavl1/HuR is required for maintenance of cranial neural crest
specification; eLife; Vol. 11; Art. No. e63600; PMCID PMC9529247; 10.7554/elife.63600
- LeBlanc, Amy K.; Mazcko, Christina N.; et el. (2022) Comparative
Oncology Assessment of a Novel Inhibitor of Valosin-Containing Protein
in Tumor-Bearing Dogs; Molecular Cancer Therapeutics; Vol. 21;
No. 10; 1510-1523; PMCID PMC9538592; 10.1158/1535-7163.mct-22-0167
- Rothenberg, Ellen V. (2022) The
Heart of the Machine: Construction of T Cell Identity, Made
Accessible; Journal of Immunology; Vol. 209; No. 7; 1235-1236; 10.4049/jimmunol.2200264
- Parker, Joseph (2022) Interactions
between insect species: their evolution and mechanistic
architecture; Current Opinion in Insect Science; Vol. 53; Art.
No. 100963; 10.1016/j.cois.2022.100963
- Spero, Melanie A.; Jones, Jeff; et el. (2022) Mechanisms
of chlorate toxicity and resistance in Pseudomonas aeruginosa;
Molecular Microbiology; Vol. 118; No. 4; 321-335; PMCID PMC9589919; 10.1111/mmi.14972
- Dai, Wenting; Wang, Zhichao; et el. (2022) Metabolic
reprogramming in the OPA1-deficient cells; Cellular and Molecular
Life Sciences; Vol. 79; No. 10; Art. No. 517; 10.1007/s00018-022-04542-5
- Guo, Jimmy K. and Guttman, Mitchell (2022) Regulatory
non-coding RNAs: everything is possible, but what is important?;
Nature Methods; Vol. 19; No. 10; 1156-1159; 10.1038/s41592-022-01629-6
- Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem-cell-based
human and mouse embryo models; Current Opinion in Genetics and
Development; Vol. 76; 101970; PMCID PMC10309046; 10.1016/j.gde.2022.101970
- Siepe, Dirk H.; Henneberg, Lukas T.; et el. (2022) Identification
of orphan ligand-receptor relationships using a cell-based CRISPRa
enrichment screening platform; eLife; Vol. 11; Art. No. e81398;
PMCID PMC9578707; 10.7554/elife.81398
- Keleş, Ümit; Kliemann, Dorit; et el. (2022) Atypical
gaze patterns in autistic adults are heterogeneous across but reliable
within individuals; Molecular Autism; Vol. 13; No. 1; Art. No. 39;
PMCID PMC9508778; 10.1186/s13229-022-00517-2
- Guan, Charles; Aflalo, Tyson; et el. (2022) Stability
of motor representations after paralysis; eLife; Vol. 11; Art.
No. 74478; PMCID PMC9555862; 10.7554/elife.74478
- Hung, Shao-Min; Wu, Daw-An; et el. (2022) Stronger
implicit interference in cognitively healthy older participants with
higher risk of Alzheimer’s disease; Alzheimer’s & Dementia:
Diagnosis, Assessment & Disease Monitoring; Vol. 14; Art.
No. e12340; PMCID PMC9489163; 10.1002/dad2.12340
- Hu, Chelsea Y. and Murray, Richard M. (2022) Layered
feedback control overcomes performance trade-off in synthetic
biomolecular networks; Nature Communications; Vol. 13; Art.
No. 5393; PMCID PMC9474519; 10.1038/s41467-022-33058-6
- Bao, Min; Cornwall-Scoones, Jake; et el. (2022) Stem
cell-derived synthetic embryos self-assemble by exploiting cadherin
codes and cortical tension; Nature Cell Biology; Vol. 24; No. 9;
1341-1349; PMCID PMC9481465; 10.1038/s41556-022-00984-y
- Lee, Peter H.; Anaya, Michael; et el. (2022) An
extracellular vesicle targeting ligand that binds to Arc proteins and
facilitates Arc transport in vivo; 10.1101/2022.09.06.506798
- Pakharukova, Natalia; Malmi, Henri; et el. (2022) Archaic
chaperone-usher pili self-secrete into superelastic zigzag springs;
Nature; Vol. 609; 335-340; 10.1038/s41586-022-05095-0
- Jang, Seongmin; Shen, Hao K.; et el. (2022) Structural
basis of receptor usage by the engineered capsid AAV-PHP.eB;
Molecular Therapy - Methods & Clinical Development; Vol. 26;
343-354; PMCID PMC9382559; 10.1016/j.omtm.2022.07.011
- Goertsen, David; Goeden, Nick; et el. (2022) Targeting
the lung epithelium after intravenous delivery by directed evolution of
underexplored sites on the AAV capsid; Molecular Therapy - Methods
& Clinical Development; Vol. 26; 331-342; PMCID PMC9372736; 10.1016/j.omtm.2022.07.010
- Knox, Hailey J.; Rego Campello, Hugo; et el. (2022) Characterization
of Binding Site Interactions and Selectivity Principles in the α3β4
Nicotinic Acetylcholine Receptor; Journal of the American Chemical
Society; Vol. 144; No. 35; 16101-16117; 10.1021/jacs.2c06495
- Hojo, Hironori; Saito, Taku; et el. (2022) Runx2
regulates chromatin accessibility to direct the osteoblast program at
neonatal stages; Cell Reports; Vol. 40; No. 10; 111315; 10.1016/j.celrep.2022.111315
- Zhang, Yide; Shen, Binglin; et el. (2022) Ultrafast
and hypersensitive phase imaging of propagating internodal current flows
in myelinated axons and electromagnetic pulses in dielectrics;
Nature Communications; Vol. 13; Art. No. 5247; PMCID PMC9448739; 10.1038/s41467-022-33002-8
- Zhang, Haifeng; Shang, Renjie; et el. (2022) Evolution
of a chordate-specific mechanism for myoblast fusion; Science
Advances; Vol. 8; No. 35; Art. No. eadd2696; 10.1126/sciadv.add2696
- Kastriti, Maria Eleni; Faure, Louis; et el. (2022) Schwann
cell precursors represent a neural crest‐like state with biased
multipotency; EMBO Journal; Vol. 41; No. 17; Art. no. e108780; PMCID
PMC9434083; 10.15252/embj.2021108780
- Wegener, Gunter; Laso-Pérez, Rafael; et el. (2022) Anaerobic
Degradation of Alkanes by Marine Archaea; Annual Review of
Microbiology; Vol. 76; No. 1; 553-577; 10.1146/annurev-micro-111021-045911
- Chure, Griffin; Banks, Rachel A.; et el. (2022) Anthroponumbers.org:
A quantitative database of human impacts on Planet Earth; Patterns;
Vol. 3; No. 9; Art. No. 100552; PMCID PMC9481956; 10.1016/j.patter.2022.100552
- Wagle, Mahendra; Zarei, Mahdi; et el. (2022) Brain-wide
perception of the emotional valence of light is regulated by distinct
hypothalamic neurons; Molecular Psychiatry; Vol. 27; No. 9;
3777-3793; PMCID PMC9613822; 10.1038/s41380-022-01567-x
- Seo, Jai Woong; Ajenjo, Javier; et el. (2022) Multimodal
imaging of capsid and cargo reveals differential brain targeting and
liver detargeting of systemically-administered AAVs; Biomaterials;
Vol. 288; Art. No. 121701; PMCID PMC9621732; 10.1016/j.biomaterials.2022.121701
- Gorin, Gennady; Fang, Meichen; et el. (2022) RNA
velocity unraveled; PLOS Computational Biology; Vol. 18; No. 9; Art.
No. e1010492; PMCID PMC9499228; 10.1371/journal.pcbi.1010492
- Aronson, Heidi S.; Monteverde, Danielle R.; et el. (2022) Sulfur
cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek,
CA; Geobiology; Vol. 20; No. 5; 707-725; 10.1111/gbi.12512
- Ravanfar, Raheleh; Sheng, Yuling; et el. (2022) Surface
cysteines could protect the SARS-CoV-2 main protease from oxidative
damage; Journal of Inorganic Biochemistry; Vol. 234; Art.
No. 111886; PMCID PMC9161685; 10.1016/j.jinorgbio.2022.111886
- Parker, Joseph (2022) Transitional
morphology and Afrotropical affinity of a bythinoplectine rove beetle
from the early Eocene of India (Coleoptera: Staphylinidae:
Pselaphinae); Palaeoentomology; Vol. 5; No. 5; 452-460; 10.11646/palaeoentomology.5.5.6
- Liang, Xuan; Weberling, Antonia; et el. (2022) E-cadherin
mediates apical membrane initiation site localisation during de novo
polarisation of epithelial cavities; EMBO Journal; Art No. e111021;
10.15252/embj.2022111021
- Foster, Jamie S. and McFall-Ngai, Margaret J. (2022) Introduction
to the special issue in honor of the contributions of Lynn Margulis
(1938-2011) Lynn Margulis: a 20th-Century scientist and a visionary of
biology; Symbiosis; 10.1007/s13199-022-00867-8
- Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain–Computer
Interfaces for Treatment of Focal Dystonia; Movement Disorders; 10.1002/mds.29178
- Harrison, Neil L.; Abbott, Geoffrey W.; et el. (2022) How
many SARS-CoV-2 “viroporins” are really ion channels?;
Communications Biology; Vol. 5; No. 1; 10.1038/s42003-022-03669-2
- Yang, Bin; Karigo, Tomomi; et el. (2022) Transformations
of neural representations in a social behaviour network; Nature;
Vol. 608; No. 7924; 741-749; PMCID PMC9529293; 10.1038/s41586-022-05057-6
- Granados, Alejandro A.; Kanrar, Nivedita; et el. (2022) Combinatorial
expression motifs in signaling pathways; 10.1101/2022.08.21.504714
- Sawada, Masahiro; Adolphs, Ralph; et el. (2022) Mapping
effective connectivity of human amygdala subdivisions with intracranial
stimulation; Nature Communications; Vol. 13; No. 1; Art. No. 4909;
10.1038/s41467-022-32644-y
- Yang, Chien-I; Zhu, Zikun; et el. (2022) System-wide
analyses reveal essential roles of N-terminal protein modification in
bacterial membrane integrity; iScience; Vol. 25; No. 8; Art.
No. 104756; PMCID PMC9356101; 10.1016/j.isci.2022.104756
- Schneider, René; Ehrhardt, David W.; et el. (2022) Tethering
of cellulose synthase to microtubules dampens mechano-induced
cytoskeletal organization in Arabidopsis pavement cells; Nature
Plants; Vol. 8; No. 9; 1064-1073; 10.1038/s41477-022-01218-7
- Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Rubisco
forms a lattice inside alpha-carboxysomes; Nature Communications;
Vol. 13; No. 1; Art. No. 4863; 10.1038/s41467-022-32584-7
- Santorelli, Marco; Bhamidipati, Pranav; et el. (2022) Cell
density controls signal propagation waves in a multicellular synthetic
gene circuit; 10.48550/arXiv.2107.08116
- Raghavan, Guruprasad and Thomson, Matt (2022) Engineering
flexible machine learning systems by traversing functionally invariant
paths in weight space; 10.48550/arXiv.2205.00334
- Murrow, Lyndsay M.; Weber, Robert J.; et el. (2022) Mapping
hormone-regulated cell-cell interaction networks in the human breast at
single-cell resolution; Cell Systems; Vol. 13; No. 8; 644-664.e8;
PMCID PMC9590200; 10.1016/j.cels.2022.06.005
- Wang, Zitong Jerry and Thomson, Matt (2022) Signaling
receptor localization maximizes cellular information acquisition in
spatially-structured, natural environments; 10.48550/arXiv.2107.00806
- Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Discovery
of a Novel Inner Membrane-Associated Bacterial Structure Related to the
Flagellar Type III Secretion System; Journal of Bacteriology; Vol.
204; No. 8; e0014422; PMCID PMC9380563; 10.1128/jb.00144-22
- Ninova, Maria; Lomenick, Brett; et el. (2022) Pervasive
SUMOylation of heterochromatin and piRNA pathway proteins; 10.1101/2022.08.15.504007
- Nichols, Aaron L.; Blumenfeld, Zack; et el. (2022) Selective
Serotonin Reuptake Inhibitors Within Cells: Temporal Resolution in
Cytoplasm, Endoplasmic Reticulum, and Membrane; 10.1101/2022.08.09.502705
- Barnes, Christopher O.; Schoofs, Till; et el. (2022) A
naturally arising broad and potent CD4-binding site antibody with low
somatic mutation; Science Advances; Vol. 8; No. 32; Art.
No. eabp8155; 10.1126/sciadv.abp8155
- Laso-Pérez, Rafael; Wu, Fabai; et el. (2022) Evolutionary
Diversification of Methanotrophic Ca. Methanophagales (ANME-1) and Their
Expansive Virome; 10.1101/2022.07.04.498658
- Flamholz, Avi I.; Saccomano, Samuel; et el. (2022) Optical
O₂ sensors also respond to redox active molecules commonly secreted by
bacteria; 10.1101/2022.08.08.503264
- Simonyan, Kristina; Ehrlich, Stefan K.; et el. (2022) Brain-Computer
Interfaces for Treatment of Focal Dystonia; Movement Disorders; 10.1002/mds.29178
- Galton, Riley; Fejes-Tóth, Katalin; et el. (2022) Co-option
of the piRNA pathway to regulate neural crest specification; Science
Advances; Vol. 8; No. 32; Art. No. abn1441; 10.1126/sciadv.abn1441
- Chai, Cynthia M.; Park, Heenam; et el. (2022) Brain-wide
bidirectional neuropeptide modulation of individual neuron classes
regulates a developmental decision; Current Biology; Vol. 32;
No. 15; 3365-3373; PMCID PMC10588560; 10.1016/j.cub.2022.05.048
- Lisitskaya, Lidiya; Shin, Yeonoh; et el. (2022) Programmable
RNA targeting by bacterial Argonaute nucleases with unconventional guide
binding and cleavage specificity; Nature Communications; Vol. 13;
Art. No. 4624; PMCID PMC9360449; 10.1038/s41467-022-32079-5
- Cohen, Alexander A.; van Doremalen, Neeltje; et el. (2022) Mosaic
RBD nanoparticles protect against challenge by diverse sarbecoviruses in
animal models; Science; Vol. 377; No. 6606; Art. No. eabq0839; PMCID
PMC9273039; 10.1126/science.abq0839
- Lau, Kasey Y. C.; Rubinstein, Hernan; et el. (2022) Mouse-embryo
model derived exclusively from embryonic stem cells undergo neurulation
and heart development; 10.1101/2022.08.01.502371
- Amadei, Gianluca; Handford, Charlotte E.; et el. (2022) Stem
cell-derived mouse embryos develop within an extra-embryonic yolk sac to
form anterior brain regions and a beating heart; 10.1101/2022.08.01.502375
- Kim, Bong Heon; Kim, Min Kyung; et el. (2022) Crystal
structure of the Ate1 arginyl-tRNA-protein transferase and arginylation
of N-degron substrates; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 119; No. 31; Art.
No. e2209597119; PMCID PMC9351520; 10.1073/pnas.2209597119
- Yang, Rui; Meyer, Amanda S.; et el. (2022) A genetic
model for in vivo proximity labelling of the mammalian secretome;
Open Biology; Vol. 12; No. 8; 220149; 10.1098/rsob.220149
- Andrews, Brenda; Chang, Jae-Byum; et el. (2022) Imaging
cell biology; Nature Cell Biology; Vol. 24; No. 8; 1180-1185; 10.1038/s41556-022-00960-6
- Boninsegna, Lorenzo; Yildirim, Asli; et el. (2022) Integrative
genome modeling platform reveals essentiality of rare contact events in
3D genome organizations; Nature Methods; Vol. 19; No. 8; 938-949; 10.1038/s41592-022-01527-x
- Meister, Markus (2022) Learning,
fast and slow; Current Opinion in Neurobiology; Vol. 75; Art.
No. 102555; 10.1016/j.conb.2022.102555
- Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Antibody
recognition of CD4-induced open HIV-1 Env trimers; 10.1101/2022.07.27.501785
- Miguel, Amanda; Zietek, Matylda; et el. (2022) Modulation
of bacterial cell size and growth rate via activation of a cell envelope
stress response; 10.1101/2022.07.26.501648
- Truong, Lisa; Chen, Yen-Wei; et el. (2022) Single-nucleus
resolution mapping of the adult C. elegans and its application to
elucidate inter- and trans-generational response to alcohol; 10.1101/2022.07.21.500524
- Ohdera, Aki H.; Darymple, Justin; et el. (2022) Symbiosis-driven
development in an early branching metazoan; 10.1101/2022.07.21.500558
- Boktor, Joseph C.; Sharon, Gil; et el. (2022) Integrated
multi-cohort analysis of the Parkinson’s disease gut metagenome; 10.1101/2022.07.20.500694
- Macabenta, Frank; Sun, Hsuan-Te; et el. (2022) BMP-gated
cell-cycle progression drives anoikis during mesenchymal collective
migration; Developmental Cell; Vol. 57; No. 14; 1683-1693; PMCID
PMC9339487; 10.1016/j.devcel.2022.05.017
- Schwartzman, Julia A.; Ebrahimi, Ali; et el. (2022) Bacterial
growth in multicellular aggregates leads to the emergence of complex
life cycles; Current Biology; Vol. 32; No. 14; 3059-3069.e7; PMCID
PMC9496226; 10.1016/j.cub.2022.06.011
- Winnett, Alexander Viloria; Akana, Reid; et el. (2022) Extreme
differences in SARS-CoV-2 viral loads among respiratory specimen types
during presumed pre-infectious and infectious periods; 10.1101/2022.07.13.22277113
- Winnett, Alexander Viloria; Akana, Reid; et el. (2022) Why
Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and
Infectious Individuals; 10.1101/2022.07.13.22277513
- Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2022) Engineered
AAVs for non-invasive gene delivery to rodent and non-human primate
nervous systems; Neuron; Vol. 110; No. 14; 2242-2257; PMCID
PMC9308721; 10.1016/j.neuron.2022.05.003
- Wang, Zitong Jerry and Thomson, Matt (2022) Localization
of signaling receptors maximizes cellular information acquisition in
spatially structured natural environments; Cell Systems; Vol. 13;
No. 7; 530-546; 10.1016/j.cels.2022.05.004
- Chen, Zibo; Linton, James M.; et el. (2022) A
synthetic protein-level neural network in mammalian cells; 10.1101/2022.07.10.499405
- Lapteva, Anna P.; Sarraf, Namita; et el. (2022) DNA
Strand-Displacement Temporal Logic Circuits; Journal of the American
Chemical Society; Vol. 144; No. 27; 12443-12449; PMCID PMC9284558; 10.1021/jacs.2c04325
- Kajikawa, Koichiro; Hulse, Brad K.; et el. (2022) UP-DOWN
states and ripples differentially modulate membrane potential dynamics
across DG, CA3, and CA1 in awake mice; eLife; Vol. 11; Art.No.
69596; PMCID PMC9275824; 10.7554/elife.69596
- Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et el. (2022) A
prebiotic diet modulates microglial states and motor deficits in
α-synuclein overexpressing mice; 10.1101/2022.06.27.497828
- Salahshoor, Hossein; Yao, Yuxing; et el. (2022) Geometric
effects in gas vesicle buckling under ultrasound; 10.1101/2022.06.27.497663
- Siepe, Dirk H.; Henneberg, Lukas T.; et el. (2022) Identification
of orphan ligand-receptor relationships using a cell-based CRISPRa
enrichment screening platform; 10.1101/2022.06.22.497261
- Fan, Chengcheng; Cohen, Alexander A.; et el. (2022) Neutralizing
monoclonal antibodies elicited by mosaic RBD nanoparticles bind
conserved sarbecovirus epitopes; 10.1101/2022.06.28.497989
- Poceviciute, Roberta; Bogatyrev, Said R.; et el. (2022) Quantitative
whole-tissue 3D imaging reveals bacteria in close association with mouse
jejunum mucosa; 10.1101/2022.06.17.496478
- Gorin, Gennady; Carilli, Maria; et el. (2022) Spectral
neural approximations for models of transcriptional dynamics; 10.1101/2022.06.16.496448
- Dutka, Przemysław; Metskas, Lauren Ann; et el. (2022) Structure
of Anabaena flos-aquae gas vesicles revealed by cryo-ET; 10.1101/2022.06.21.496981
- Hueschen, Christina L.; Dunn, Alexander R.; et el. (2022) Wildebeest
Herds on Rolling Hills: Flocking on Arbitrary Curved Surfaces; 10.1101/2022.06.22.497052
- Tran, Tracy; Song, Cheng Jack; et el. (2022) A
scalable organoid model of human autosomal dominant polycystic kidney
disease for disease mechanism and drug discovery; Cell Stem Cell;
Vol. 29; No. 7; 1083-1101.e7; 10.1016/j.stem.2022.06.005
- Tribby, Ariana L.; Bois, Justin S.; et el. (2022) Hydrocarbon
Tracers Suggest Methane Emissions from Fossil Sources Occur
Predominately Before Gas Processing and That Petroleum Plays Are a
Significant Source; Environmental Science and Technology; Vol. 56;
No. 13; 9623-9631; PMCID PMC9260955; 10.1021/acs.est.2c00927
- Wang, F.; Li, S.; et el. (2022) P97/VCP
ATPase inhibitors can rescue p97 mutation-linked motor neuron
degeneration; Brain Communications; Vol. 4; No. 4; Art. No. fcac176;
PMCID PMC9294923; 10.1093/braincomms/fcac176
- Dam, Kim-Marie A.; Mutia, Patricia S.; et el. (2022) Comparing
methods for immobilizing HIV-1 SOSIPs in ELISAs that evaluate antibody
binding; Scientific Reports; Vol. 12; Art. No. 11172; PMCID
PMC9247892; 10.1038/s41598-022-15506-x
- Heryakusuma, Christian; Susanti, Dwi; et el. (2022) A
Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic
Archaeon; Journal of Bacteriology; Vol. 204; No. 7; Art.
No. e00078-22; PMCID PMC9295563; 10.1128/jb.00078-22
- Challis, Rosemary C.; Ravindra Kumar, Sripriya; et el. (2022) Adeno-Associated
Virus Toolkit to Target Diverse Brain Cells; Annual Review of
Neuroscience; Vol. 45; 447-469; 10.1146/annurev-neuro-111020-100834
- Jhaveri, Nikita; van den Berg, Wouter; et el. (2022) Genome
annotation of Caenorhabditis briggsae by TEC-RED identifies new exons,
paralogs, and conserved and novel operons; G3: Genes, Genomes,
Genetics; Vol. 12; No. 7; Art. No. jkac101; PMCID PMC9258526; 10.1093/g3journal/jkac101
- Tookmanian, Elise; Junghans, Lisa; et el. (2022) Hopanoids
Confer Robustness to Physicochemical Variability in the Niche of the
Plant Symbiont Bradyrhizobium diazoefficiens; Journal of
Bacteriology; Vol. 204; No. 7; jb.00442-21; PMCID PMC9295548; 10.1128/jb.00442-21
- Speth, Daan R.; Yu, Feiqiao B.; et el. (2022) Microbial
communities of Auka hydrothermal sediments shed light on vent
biogeography and the evolutionary history of thermophily; ISME
Journal; Vol. 16; 1750-1764; 10.1038/s41396-022-01222-x
- Koontz, Alison; Urrutia, Hugo A.; et el. (2022) Retroviral
lineage analysis reveals dual contribution from ectodermal placodes and
neural crest cells to avian olfactory sensory and GnRH neurons;
Natural Sciences; Vol. 2; No. 3; Art. No. e20210037; PMCID PMC9605686;
10.1002/ntls.20210037
- Ding, Fangyuan; Su, Christina J.; et el. (2022) Dynamics
and functional roles of splicing factor autoregulation; Cell
Reports; Vol. 39; No. 12; Art. No. 110985; PMCID PMC9262138; 10.1016/j.celrep.2022.110985
- Hueschen, Christina L.; Segev Zarko, Li-av; et el. (2022) Emergent
Actin Flows Explain Diverse Parasite Gliding Modes; 10.1101/2022.06.08.495399
- Byrge, Lisa; Kliemann, Dorit; et el. (2022) Video-evoked
fMRI BOLD responses are highly consistent across different data
acquisition sites; Human Brain Mapping; Vol. 43; No. 9; 2972-2991;
PMCID PMC9120552; 10.1002/hbm.25830
- Yu, Hang; Speth, Daan R.; et el. (2022) Community
Structure and Microbial Associations in Sediment-Free Methanotrophic
Enrichment Cultures from a Marine Methane Seep; Applied and
Environmental Microbiology; Vol. 88; No. 11; Art. No. e0210921; PMCID
PMC9195934; 10.1128/aem.02109-21
- Gorin, Gennady and Pachter, Lior (2022) Monod:
mechanistic analysis of single-cell RNA sequencing count data; 10.1101/2022.06.11.495771
- Bley, Christopher J.; Nie, Si; et el. (2022) Architecture
of the cytoplasmic face of the nuclear pore; Science; Vol. 376;
No. 6598; Art. No. abm9129; PMCID PMC9348906; 10.1126/science.abm9129
- Bozhanova, Nina G.; Flyak, Andrew I.; et el. (2022) Computational
identification of HCV neutralizing antibodies with a common HCDR3
disulfide bond motif in the antibody repertoires of infected
individuals; Nature Communications; Vol. 13; Art. No. 3178; PMCID
PMC9177688; 10.1038/s41467-022-30865-9
- Glynn, Allison T.; Davidson, Samuel R.; et el. (2022) Developmental
Self-Assembly of a DNA Ring with Stimulus-Responsive Size and Growth
Direction; Journal of the American Chemical Society; Vol. 144;
No. 22; 10075-10079; PMCID PMC9185747; 10.1021/jacs.2c03853
- Hu, Rongfeng K.; Chen, Patrick B.; et el. (2022) Improved
Version of ChETA Promotes Aggression in the Medial Amygdala; 10.1101/2022.06.05.493862
- Booeshaghi, A. Sina and Pachter, Lior (2022) Pseudoalignment
facilitates assignment of error-prone Ultima Genomics reads; 10.1101/2022.06.04.494845
- Nicolas, William J.; Fäßler, Florian; et el. (2022) Cryo-electron
tomography of the onion cell wall shows bimodally oriented cellulose
fibers and reticulated homogalacturonan networks; Current Biology;
Vol. 32; No. 11; 2375-2389; PMCID PMC9240970; 10.1016/j.cub.2022.04.024
- Wang, Feng; Li, Shan; et el. (2022) Sulforaphane
is Synergistic with CB‐5083 and Inhibits Colony Formation of
CB‐5083‐Resistant HCT116 Cells; ChemMedChem; Vol. 17; No. 11; Art.
No. e202200030; 10.1002/cmdc.202200030
- Tan, Chieh-Hsiang; Park, Heenam; et el. (2022) Loss
of famh-136/ FAM136A results in minor locomotion and behavioral changes
in Caenorhabditis elegans; microPublication Biology; Vol. 2022; Art.
No. 000553; PMCID PMC9163966; 10.17912/micropub.biology.000553
- Gálvez-Merchán, Ángel; Min, Kyung Hoi (Joseph); et el. (2022) Metadata
retrieval from sequence databases with ffq; 10.1101/2022.05.18.492548
- Wang, Megan; Sanfiorenzo, Charles; et el. (2022) A
universal system for streamlined genome integrations with
CRISPR-associated transposases; 10.1101/2022.05.30.494051
- Wandelt, Sarah K.; Kellis, Spencer; et el. (2022) Decoding
grasp and speech signals from the cortical grasp circuit in a
tetraplegic human; Neuron; Vol. 110; No. 11; 1777-1787; PMCID
PMC9186423; 10.1016/j.neuron.2022.03.009
- Case, Nicola T.; Song, Min; et el. (2022) Exploring
Space via Astromycology: A Report on the CIFAR Programs Earth 4D and
Fungal Kingdom Inaugural Joint Meeting; Astrobiology; Vol. 22;
No. 6; 637-640; PMCID PMC9233531; 10.1089/ast.2021.0186
- Bostick, John W.; Schonhoff, Aubrey M.; et el. (2022) Gut
microbiome-mediated regulation of neuroinflammation; Current Opinion
in Immunology; Vol. 76; Art. No. 102177; PMCID PMC9167715; 10.1016/j.coi.2022.102177
- Tjahjono, Nikki; Jin, Yihan; et el. (2022) Letting
the little light of mind shine: Advances and future directions in
neurochemical detection; Neuroscience Research; Vol. 179; 65-78;
PMCID PMC9508992; 10.1016/j.neures.2021.11.012
- Chen, Xiaoqiao; Chen, Sisi; et el. (2022) Minimal
gene set discovery in single-cell mRNA-seq datasets with ActiveSVM;
Nature Computational Science; Vol. 2; No. 6; 387-398; 10.1038/s43588-022-00263-8
- Peck, Ariana; Carter, Stephen D.; et el. (2022) Montage
electron tomography of vitrified specimens; Journal of Structural
Biology; Vol. 214; No. 2; 107860; PMCID PMC10081539; 10.1016/j.jsb.2022.107860
- Naragon, Thomas H.; Wagner, Julian M.; et el. (2022) Parallel
evolutionary paths of rove beetle myrmecophiles: replaying a deep-time
tape of life; Current Opinion in Insect Science; Vol. 51; Art.
No. 100903; 10.1016/j.cois.2022.100903
- Meirelles, Lucas A. and Newman, Dianne K. (2022) Phenazines
and toxoflavin act as interspecies modulators of resilience to diverse
antibiotics; Molecular Microbiology; Vol. 117; No. 6; 1384-1404;
PMCID PMC10249331; 10.1111/mmi.14915
- Andersen, Richard A. and Aflalo, Tyson (2022) Preserved
cortical somatotopic and motor representations in tetraplegic
humans; Current Opinion in Neurobiology; Vol. 74; Art. No. 102547;
PMCID PMC9167753; 10.1016/j.conb.2022.102547
- Livingston, Jadzia; Spero, Melanie A.; et el. (2022) Visualization
of mRNA Expression in Pseudomonas aeruginosa Aggregates Reveals Spatial
Patterns of Fermentative and Denitrifying Metabolism; Applied and
Environmental Microbiology; Vol. 88; No. 11; Art. No. aem.00439-22; 10.1128/aem.00439-22
- Lingappa, Usha F.; Stein, Nathaniel T.; et el. (2022) Early
impacts of climate change on a coastal marine microbial mat
ecosystem; Science Advances; Vol. 8; No. 21; Art. No. eabm7826;
PMCID PMC9140962; 10.1126/sciadv.abm7826
- Cryan, John F. and Mazmanian, Sarkis K. (2022) Microbiota–brain
axis: Context and causality; Science; Vol. 376; No. 6596; 938-939;
10.1126/science.abo4442
- Papdogiannis, Vasileios; Pennati, Alessandro; et el. (2022) Hmx
gene conservation identifies the origin of vertebrate cranial
ganglia; Nature; Vol. 605; No. 7911; 701-705; PMCID PMC10214386; 10.1038/s41586-022-04742-w
- Porter, Nicholas J.; Danelius, Emma; et el. (2022) Biocatalytic
Carbene Transfer Using Diazirines; Journal of the American Chemical
Society; Vol. 144; No. 20; 8892-8896; PMCID PMC9205183; 10.1021/jacs.2c02723
- Chai, Cynthia M.; Torkashvand, Mahdi; et el. (2022) Interneuron
control of C. elegans developmental decision-making; Current
Biology; Vol. 32; No. 10; 2316-2324; PMCID PMC9270850; 10.1016/j.cub.2022.03.077
- Luebbert, Laura and Pachter, Lior (2022) Efficient
querying of genomic reference databases with gget; 10.1101/2022.05.17.492392
- Zhou, Wen; Gao, Fan; et el. (2022) Single-cell
deletion analyses show control of pro–T cell developmental speed and
pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b; Science
Immunology; Vol. 7; No. 71; eabm1920; PMCID PMC9273332; 10.1126/sciimmunol.abm1920
- Molina, Rosana S.; Rix, Gordon; et el. (2022) In
vivo hypermutation and continuous evolution; Nature Reviews Methods
Primers; Vol. 2; Art. No. 36; 10.1038/s43586-022-00119-5
- Su, Christina J.; Murugan, Arvind; et el. (2022) Ligand-receptor
promiscuity enables cellular addressing; Cell Systems; Vol. 13;
No. 5; 408-425; PMCID PMC10897978; 10.1016/j.cels.2022.03.001
- Klumpe, Heidi E.; Langley, Matthew A.; et el. (2022) The
context-dependent, combinatorial logic of BMP signaling; Cell
Systems; Vol. 13; No. 5; 388-407; PMCID PMC9127470; 10.1016/j.cels.2022.03.002
- Muthusamy, Anand K.; Kim, Charlene H.; et el. (2022) Three
Mutations Convert the Selectivity of a Protein Sensor from Nicotinic
Agonists to S-Methadone for Use in Cells, Organelles, and Biofluids;
Journal of the American Chemical Society; Vol. 144; No. 19; 8480-8486;
PMCID PMC9121368; 10.1021/jacs.2c02323
- Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2022) Novel
transient cytoplasmic rings stabilize assembling bacterial flagellar
motors; EMBO Journal; Vol. 41; No. 10; Art. No. e109523; PMCID
PMC9108667; 10.15252/embj.2021109523
- Zhang, Gang; Wang, Feng; et el. (2022) Discovery
of small-molecule inhibitors of RUVBL1/2 ATPase; Bioorganic and
Medicinal Chemistry; Vol. 62; Art. No. 116726; PMCID PMC9034851; 10.1016/j.bmc.2022.116726
- Davison, Helen R.; Pilgrim, Jack; et el. (2022) Genomic
diversity across the Rickettsia and ‘Candidatus Megaira’ genera and
proposal of genus status for the Torix group; Nature Communications;
Vol. 13; Art. No. 2630; PMCID PMC9098888; 10.1038/s41467-022-30385-6
- Zhang, Bao; He, Peng; et el. (2022) A
human embryonic limb cell atlas resolved in space and time; 10.1101/2022.04.27.489800
- Shinya, Ryoji; Sun, Simo; et el. (2022) Possible
stochastic sex determination in Bursaphelenchus nematodes; Nature
Communications; Vol. 13; Art. No. 2574; 10.1038/s41467-022-30173-2
- Tang, Weiyi; Jacobs-Li, Jessica; et el. (2022) Single-cell
profiling coupled with lineage analysis reveals distinct sacral neural
crest contributions to the developing enteric nervous system; 10.1101/2022.05.09.491197
- Booeshaghi, A. Sina; Hallgrímsdóttir, Ingileif B.; et el. (2022) Depth
normalization for single-cell genomics count data; 10.1101/2022.05.06.490859
- Aflalo, Tyson; Zhang, Carey; et el. (2022) Implicit
mechanisms of intention; Current Biology; Vol. 32; No. 9; 2051-2060;
PMCID PMC9090994; 10.1016/j.cub.2022.03.047
- Fu, Zhongzheng; Beam, Danielle; et el. (2022) The
geometry of domain-general performance monitoring in the human medial
frontal cortex; Science; Vol. 376; No. 6593; Art. No. abm9922; 10.1126/science.abm9922
- Pool, Allan-Hermann; Poldsam, Helen; et el. (2022) Enhanced
recovery of single-cell RNA-sequencing reads for missing gene expression
data; 10.1101/2022.04.26.489449
- Mondragón-Palomino, Octavio; Poceviciute, Roberta; et el. (2022) Three-dimensional
imaging for the quantification of spatial patterns in microbiota of the
intestinal mucosa; Proceedings of the National Academy of Sciences;
Vol. 119; No. 18; Art. No. e2118483119; PMCID PMC9171773; 10.1073/pnas.2118483119
- Jacobs, Jana L.; Bain, William; et el. (2022) Severe
Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With
Coronavirus Disease 2019 Severity and Predicts Clinical Outcome;
Clinical Infectious Diseases; Vol. 74; No. 9; 1525-1533; PMCID
PMC9070832; 10.1093/cid/ciab686
- Zhang, Mark G. and Sternberg, Paul W. (2022) Both
entry to and exit from diapause arrest in Caenorhabditis elegans are
regulated by a steroid hormone pathway; Development; Vol. 149;
No. 9; Art. No. dev200173; PMCID PMC9148571; 10.1242/dev.200173
- Quinodoz, Sofia A. and Guttman, Mitchell (2022) Essential
Roles for RNA in Shaping Nuclear Organization; Cold Spring Harbor
Perspectives in Biology; Vol. 14; No. 5; a039719; PMCID PMC9159268; 10.1101/cshperspect.a039719
- Cable, Jennifer; Rappuoli, Rino; et el. (2022) Innovative
vaccine approaches—a Keystone Symposia report; Annals of the New
York Academy of Sciences; Vol. 1511; No. 1; 59-86; 10.1111/nyas.14739
- Naved, Bilal A.; Bonventre, Joseph V.; et el. (2022) Kidney
repair and regeneration: perspectives of the NIDDK (Re)Building a Kidney
consortium; Kidney International; Vol. 101; No. 5; 845-853; 10.1016/j.kint.2022.02.023
- Moses, Lambda and Pachter, Lior (2022) Museum
of spatial transcriptomics; Nature Methods; Vol. 19; No. 5; 534-546;
10.1038/s41592-022-01409-2
- Casazza, Joseph P.; Cale, Evan M.; et el. (2022) Safety
and tolerability of AAV8 delivery of a broadly neutralizing antibody in
adults living with HIV: a phase 1, dose-escalation trial; Nature
Medicine; Vol. 28; No. 5; 1022-1030; 10.1038/s41591-022-01762-x
- Graebener, Josefine B.; Badithela, Apurva; et el. (2022) Towards
Better Test Coverage: Merging Unit Tests for Autonomous Systems;
ISBN 9783031067723; NASA Formal Methods: 14th International Symposium,
NFM 2022, Pasadena, CA, USA, May 24–27, 2022, Proceedings; Springer:
Cham; 133-155; 10.1007/978-3-031-06773-0_7
- Endo, Yoshitaka; Shimojo, Shinsuke; et el. (2022) Investigation
of influence of loss function weights of cycle-consistent adversarial
networks on generation of pareidolia stimuli; ISBN 9781510653313;
International Workshop on Advanced Imaging Technology (IWAIT) 2022;
Society of Photo-Optical Instrumentation Engineers: Bellingham, WA; Art.
No. 121773I; 10.1117/12.2625964
- Nair, Aditya; Karigo, Tomomi; et el. (2022) An
approximate line attractor in the hypothalamus that encodes an
aggressive internal state; 10.1101/2022.04.19.488776
- Poole, William; Pandey, Ayush; et el. (2022) BioCRNpyler:
Compiling chemical reaction networks from biomolecular parts in diverse
contexts; PLoS Computational Biology; Vol. 18; No. 4; Art.
No. e1009987; PMCID PMC9060376; 10.1371/journal.pcbi.1009987
- Esyunina, Daria; Okhtienko, Anastasiia; et el. (2022) Specific
targeting of plasmids with Argonaute enables genome editing; 10.1101/2022.04.14.488398
- Pandey, Ayush; Incer, Inigo; et el. (2022) From
Specification to Implementation: Assume-Guarantee Contracts for
Synthetic Biology; 10.1101/2022.04.08.487709
- Suresh, Pooja; Galstyan, Vahe; et el. (2022) Modeling
and mechanical perturbations reveal how spatially regulated anchorage
gives rise to spatially distinct mechanics across the mammalian
spindle; 10.1101/2022.04.08.487649
- Tran, Steven and Prober, David A. (2022) Validation
of Candidate Sleep Disorder Risk Genes Using Zebrafish; Frontiers in
Molecular Neuroscience; Vol. 15; Art. No. 873520; PMCID PMC9021570; 10.3389/fnmol.2022.873520
- Li, Ya-tang and Meister, Markus (2022) Functional
Cell Types in the Mouse Superior Colliculus; 10.1101/2022.04.01.486789
- Xu, Shuwa; Sergeeva, Alina P.; et el. (2022) Affinity
requirements for control of synaptic targeting and neuronal cell
survival by heterophilic IgSF cell adhesion molecules; Cell Reports;
Vol. 39; No. 1; Art. No. 110618; PMCID PMC9078203; 10.1016/j.celrep.2022.110618
- Li, Shan; Wang, Feng; et el. (2022) NMS-873
Leads to Dysfunctional Glycometabolism in A p97-Independent Manner in
HCT116 Colon Cancer Cells; Pharmaceutics; Vol. 14; No. 4; 764; PMCID
PMC9024726; 10.3390/pharmaceutics14040764
- Fan, Jiang-peng; Geng, Hui-zhen; et el. (2022) Age-dependent
alterations in key components of the nigrostriatal dopaminergic system
and distinct motor phenotypes; Acta Pharmacologica Sinica; Vol. 43;
No. 4; 862-875; PMCID PMC8975991; 10.1038/s41401-021-00713-5
- Agapite, Julie; Albou, Laurent-Philippe; et el. (2022) Harmonizing
model organism data in the Alliance of Genome Resources; Genetics;
Vol. 220; No. 4; Art. No. iyac022; PMCID PMC8982023; 10.1093/genetics/iyac022
- Kanwal, Jessleen K. and Parker, Joseph (2022) The
neural basis of interspecies interactions in insects; Current
Opinion in Insect Science; Vol. 50; Art. No. 100891; 10.1016/j.cois.2022.100891
- Greenwald, Noah F.; Miller, Geneva; et el. (2022) Whole-cell
segmentation of tissue images with human-level performance using
large-scale data annotation and deep learning; Nature Biotechnology;
Vol. 40; No. 4; 555-565; PMCID PMC9010346; 10.1038/s41587-021-01094-0
- Davis, Paul; Zarowiecki, Magdalena; et el. (2022) WormBase
in 2022—data, processes, and tools for analyzing Caenorhabditis
elegans; Genetics; Vol. 220; No. 4; Art. No. iyac003; PMCID
PMC8982018; 10.1093/genetics/iyac003
- Kliemann, Dorit; Adolphs, Ralph; et el. (2022) Caltech
Conte Center, a multimodal data resource for exploring social cognition
and decision-making; Scientific Data; Vol. 9; Art. No. 138; PMCID
PMC8971509; 10.1038/s41597-022-01171-2
- Bali, Namrata; Lee, Hyung-Kook (Peter); et el. (2022) Sticks
and Stones, a conserved cell surface ligand for the Type IIa RPTP Lar,
regulates neural circuit wiring in Drosophila; eLife; Vol. 11; Art.
No. e71469; PMCID PMC9000958; 10.7554/eLife.71469
- Dam, Kim-Marie A.; Barnes, Christopher O.; et el. (2022) HIV-1
CD4-binding site germline antibody-Env structures inform vaccine
design; 10.1101/2022.03.25.485873
- Wang, Sheng; Garcia-Ojalvo, Jordi; et el. (2022) Periodic
spatial patterning with a single morphogen; 10.1101/2022.03.21.484932
- da Veiga Beltrame, Eduardo; Arnaboldi, Valerio; et el. (2022) WormBase
single-cell tools; Bioinformatics Advances; Vol. 2; No. 1; vbac018;
PMCID PMC9258504; 10.1093/bioadv/vbac018
- Yang, Huan; Sibilla, Caroline; et el. (2022) Clueless/CLUH
regulates mitochondrial fission by promoting recruitment of Drp1 to
mitochondria; Nature Communications; Vol. 13; No. 1; Art. No. 1582;
10.1038/s41467-022-29071-4
- Miller, David C.; Lal, Ravi G.; et el. (2022) Biocatalytic
One-Carbon Ring Expansion of Aziridines to Azetidines via a Highly
Enantioselective [1,2]-Stevens Rearrangement; Journal of the
American Chemical Society; Vol. 144; No. 11; 4739-4745; PMCID
PMC9022672; 10.1021/jacs.2c00251
- Wareham, Lauren K.; Liddelow, Shane A.; et el. (2022) Solving
neurodegeneration: common mechanisms and strategies for new
treatments; Molecular Neurodegeneration; Vol. 17; Art. No. 23; PMCID
PMC8935795; 10.1186/s13024-022-00524-0
- Wittmann, Bruce J.; Johnston, Kadina E.; et el. (2022) evSeq:
Cost-Effective Amplicon Sequencing of Every Variant in a Protein
Library; ACS Synthetic Biology; Vol. 11; No. 3; 1313-1324; 10.1021/acssynbio.1c00592
- Ma, Yitong; Budde, Mark W.; et el. (2022) Synthetic
mammalian signaling circuits for robust cell population control;
Cell; Vol. 185; No. 6; 967-979; PMCID PMC8995209; 10.1016/j.cell.2022.01.026
- Wang, Feng; Li, Shan; et el. (2022) Temporal
proteomics reveal specific cell cycle oncoprotein downregulation by
p97/VCP inhibition; Cell Chemical Biology; Vol. 29; No. 3; 517-529;
PMCID PMC8934257; 10.1016/j.chembiol.2021.11.005
- Wang, Tongtong; Pool, Allan-Hermann; et el. (2022) Serotonergic
fast lane from taste detection to preparatory digestive actions;
Neuron; Vol. 110; No. 6; 907-909; 10.1016/j.neuron.2022.02.023
- Braun, A. L.; Fabian, D. K.; et el. (2022) Virgin
Birth: A genetic basis for facultative parthenogenesis; 10.1101/2022.03.13.484157
- Gorin, Gennady and Pachter, Lior (2022) Modeling
bursty transcription and splicing with the chemical master equation;
Biophysical Journal; Vol. 121; No. 6; 1056-1069; 10.1016/j.bpj.2022.02.004
- Namiki, Shigehiro; Ros, Ivo G.; et el. (2022) A
population of descending neurons that regulates the flight motor of
Drosophila; Current Biology; Vol. 32; No. 5; 1189-1196; PMCID
PMC9206711; 10.1016/j.cub.2022.01.008
- Flamholz, Avi I. and Newman, Dianne K. (2022) Microbial
communities: The metabolic rate is the trait; Current Biology; Vol.
32; No. 5; R215-R218; 10.1016/j.cub.2022.02.002
- Chure, Griffin; Banks, Rachel A.; et el. (2022) Anthroponumbers.org:
A Quantitative Database Of Human Impacts on Planet Earth; 10.1101/2022.03.04.483053
- Winnett, Alexander Viloria; Porter, Michael K.; et el. (2022) Morning
SARS-CoV-2 testing yields better detection of infection due to higher
viral loads in saliva and nasal swabs upon waking; 10.1101/2022.03.02.22271724
- Schonhoff, Aubrey M. and Mazmanian, Sarkis K. (2022) Lung
microbes mediate spinal-cord autoimmunity; Nature; Vol. 603;
No. 7899; 38-40; 10.1038/d41586-022-00468-x
- Cui, Lian; Guo, Jeff; et el. (2022) Glutamate
in primary afferents is required for itch transmission; Neuron; Vol.
110; No. 5; 809-823; PMCID PMC8898340; 10.1016/j.neuron.2021.12.007
- Liu, Mengyu; Kim, Dong-Wook; et el. (2022) Make
war not love: The neural substrate underlying a state-dependent switch
in female social behavior; Neuron; Vol. 110; No. 5; 841-856; PMCID
PMC8897222; 10.1016/j.neuron.2021.12.002
- Lamanna, Francesco; Hervas-Sotomayor, Francisca; et el. (2022) Reconstructing
the ancestral vertebrate brain using a lamprey neural cell type
atlas; 10.1101/2022.02.28.482278
- Shinoda, Kenta; Choe, Andrea; et el. (2022) Nematode
ascarosides attenuate mammalian type 2 inflammatory responses;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 119; No. 9; Art. No. e2108686119; PMCID PMC8892368; 10.1073/pnas.2108686119
- Whitehead, Samuel C.; Leone, Sofia; et el. (2022) Neuromuscular
embodiment of feedback control elements in Drosophila flight; 10.1101/2022.02.22.481344
- Sacher, Wesley D.; Chen, Fu-Der; et el. (2022) Optical
phased array neural probes for beam-steering in brain tissue; Optics
Letters; Vol. 47; No. 5; 1073-1076; 10.1364/OL.441609
- Daş, Ersin and Murray, Richard M. (2022) Robust
Safe Control Synthesis with Disturbance Observer-Based Control Barrier
Functions; 10.48550/arXiv.2201.05758
- Beery, Sara; Cole, Elijah; et el. (2022) Species
Distribution Modeling for Machine Learning Practitioners: A Review;
10.48550/arXiv.2107.10400
- Badithela, Apurva and Murray, Richard M. (2022) Synthesis
of Static Test Environments for Observing Sequence-like Behaviors in
Autonomous Systems; 10.48550/arXiv.2108.05911
- Cohen, Sarah M.; Wrobel, Chester J. J.; et el. (2022) Formation
and function of dauer ascarosides in the nematodes Caenorhabditis
briggsae and Caenorhabditis elegans; G3; Vol. 12; No. 3; Art.
No. jkac014; PMCID PMC8895998; 10.1093/g3journal/jkac014
- Perry, Elena K.; Meirelles, Lucas A.; et el. (2022) From
the soil to the clinic: the impact of microbial secondary metabolites on
antibiotic tolerance and resistance; Nature Reviews Microbiology;
Vol. 20; No. 3; 129-142; PMCID PMC8857043; 10.1038/s41579-021-00620-w
- Bostick, John W. and Mazmanian, Sarkis K. (2022) Impaired
gut barrier affects microglia health; Nature Neuroscience; Vol. 25;
No. 3; 268-270; 10.1038/s41593-022-01028-2
- Perry, Elena K. and Newman, Dianne K. (2022) Prevalence
and Correlates of Phenazine Resistance in Culturable Bacteria from a
Dryland Wheat Field; Applied and Environmental Microbiology; Vol.
88; No. 6; Art. No. e02320-21; PMCID PMC8939311; 10.1128/aem.02320-21
- Stewart Campbell, A.; Needham, Brittany D.; et el. (2022) Safety
and target engagement of an oral small-molecule sequestrant in
adolescents with autism spectrum disorder: an open-label phase 1b/2a
trial; Nature Medicine; Vol. 28; No. 3; 528-534; 10.1038/s41591-022-01683-9
- Kim, Jongmin; Quijano, Juan F.; et el. (2022) Synthetic
logic circuits using RNA aptamer against T7 RNA polymerase;
Biotechnology Journal; Vol. 17; No. 3; Art. No. 2000449; 10.1002/biot.202000449
- Jachowicz, Joanna W.; Strehle, Mackenzie; et el. (2022) Xist
spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide
silencing and specificity to the X chromosome; Nature Structural and
Molecular Biology; Vol. 29; No. 3; 239-249; PMCID PMC8969943; 10.1038/s41594-022-00739-1
- Morton, James T.; Jin, Dong-Min; et el. (2022) Multi-omic
analysis along the gut-brain axis points to a functional architecture of
autism; 10.1101/2022.02.25.482050
- Ahmadi, Mohamadreza; Rosolia, Ugo; et el. (2022) Risk-Averse
Decision Making Under Uncertainty; 10.48550/arXiv.2109.04082
- Sun, Jennifer J.; Ryou, Serim; et el. (2022) Self-Supervised
Keypoint Discovery in Behavioral Videos; 10.48550/arXiv.2112.05121
- Needham, Brittany D.; Funabashi, Masanori; et el. (2022) A
gut-derived metabolite alters brain activity and anxiety behaviour in
mice; Nature; Vol. 602; No. 7899; 647-653; PMCID PMC9170029; 10.1038/s41586-022-04396-8
- Garg, Pranjal; Tan, Chieh-Hsiang; et el. (2022) DiI
staining of sensory neurons in the entomopathogenic nematode Steinernema
hermaphroditum; microPublication Biology; PMCID PMC8874337; 10.17912/micropub.biology.000516
- Zhao, Wei and Jensen, Grant J. (2022) In
situ architecture of human kinetochore-microtubule interface visualized
by cryo-electron tomography; 10.1101/2022.02.17.480955
- McMahon, Andrew P. and Ichida, Justin K. (2022) Repairing
the blood-brain barrier; Science; Vol. 375; No. 6582; 715-716; 10.1126/science.abn7921
- Vlahos, Alexander E.; Kang, Jeewoo; et el. (2022) Protease-controlled
secretion and display of intercellular signals; Nature
Communications; Vol. 13; Art. No. 912; PMCID PMC8854555; 10.1038/s41467-022-28623-y
- Ichiki, Takako; Wang, Tongtong; et el. (2022) Sensory
representation and detection mechanisms of gut osmolality change;
Nature; Vol. 602; No. 7897; 468-474; 10.1038/s41586-021-04359-5
- Gorin, Gennady; Fang, Meichen; et el. (2022) RNA
velocity unraveled; 10.1101/2022.02.12.480214
- Shen, Cheng; Lamba, Adiyant; et el. (2022) Stain-free
detection of embryo polarization using deep learning; Scientific
Reports; Vol. 12; Art. No. 2404; 10.1038/s41598-022-05990-6
- Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Bacterial
microcompartment organization by cryo electron tomography and
high-resolution subtomogram averaging; Biophysical Journal; Vol.
121; No. 3; 168a; 10.1016/j.bpj.2021.11.1892
- Suresh, Pooja; Galstyan, Vahe; et el. (2022) Connections
distributed within 3 μm of chromosomes are necessary and sufficient for
the kinetochore-fiber’s robust anchorage in the mammalian spindle;
Biophysical Journal; Vol. 121; No. 3; 448a-449a; 10.1016/j.bpj.2021.11.536
- Hueschen, Christina; Segev Zarko, Li-av; et el. (2022) Distinct
self-organized actin patterns explain diverse parasite gliding
modes; Biophysical Journal; Vol. 121; No. 3; 314a; 10.1016/j.bpj.2021.11.1183
- Guttman, Mitchell (2022) How
non-coding RNAs shape nuclear structure to regulate gene expression;
Biophysical Journal; Vol. 121; No. 3; 167a; 10.1016/j.bpj.2021.11.1898
- Arnold, Frances H. (2022) Innovation
by evolution: bringing new chemistry to life; Biophysical Journal;
Vol. 121; No. 3; 177a; 10.1016/j.bpj.2021.11.1846
- Duarte, Ana I.; Jin Lee, Heun; et el. (2022) Measuring
energy consumption through space and time in an active matter system of
cytoskeletal motors and filaments; Biophysical Journal; Vol. 121;
No. 3; 521a-522a; 10.1016/j.bpj.2021.11.2745
- Nandi, Purbasha; Li, Shan; et el. (2022) Mechanism
of the alteration in domain-domain communications in human p97/VCP
atpase; Biophysical Journal; Vol. 121; No. 3; 298a; 10.1016/j.bpj.2021.11.1259
- Larios, David A.; Phillips, Rob; et el. (2022) Reconstituting
the nonequilibrium biophysics of the LECA cytoskeleton in active
matter; Biophysical Journal; Vol. 121; No. 3; 521a; 10.1016/j.bpj.2021.11.2744
- Salmon, Gabe and Phillips, Rob (2022) Reproducibility,
stochasticity, and geometry in a lattice of cross-feeding microbial
cells; Biophysical Journal; Vol. 121; No. 3; 120a; 10.1016/j.bpj.2021.11.2086
- Stundl, Jan; Soukup, Vladimir; et el. (2022) Efficient
CRISPR Mutagenesis in Sturgeon Demonstrates Its Utility in Large,
Slow-Maturing Vertebrates; Frontiers in Cell and Developmental
Biology; Vol. 10; Art. No. 750833; PMCID PMC8867083; 10.3389/fcell.2022.750833
- Luo, Yicheng; He, Peng; et el. (2022) Maternally
inherited siRNAs initiate piRNA cluster formation; 10.1101/2022.02.08.479612
- Weber, Timm; Potthoff, Julian; et el. (2022) Analysis
of antibodies from HCV elite neutralizers identifies genetic
determinants of broad neutralization; Immunity; Vol. 55; No. 2;
341-354; PMCID PMC10089621; 10.1016/j.immuni.2021.12.003
- Yang, Zhi; Dam, Kim-Marie A.; et el. (2022) Neutralizing
antibodies induced in immunized macaques recognize the CD4-binding site
on an occluded-open HIV-1 envelope trimer; Nature Communications;
Vol. 13; Art. No. 732; PMCID PMC8826976; 10.1038/s41467-022-28424-3
- Tanaka, Shiho; Olson, C. Anders; et el. (2022) Rapid
identification of neutralizing antibodies against SARS-CoV-2 variants by
mRNA display; Cell Reports; Vol. 38; No. 6; Art. No. 110348; PMCID
PMC8769934; 10.1016/j.celrep.2022.110348
- Wang, Feng; Li, Shan; et el. (2022) The
p97 Inhibitor UPCDC-30245 Blocks Endo-Lysosomal Degradation;
Pharmaceuticals; Vol. 15; No. 2; Art. No. 204; PMCID PMC8880557; 10.3390/ph15020204
- Lee, Daniel A.; Oikonomou, Grigorios; et el. (2022) Large-scale
Analysis of Sleep in Zebrafish; Bio-protocol; Vol. 12; No. 3; Art.
No. e4313; 10.21769/bioprotoc.4313
- Dunipace, Leslie; Newcomb, Susan; et el. (2022) Brinker
levels regulated by a promoter proximal element support germ cell
homeostasis; Development; Vol. 149; No. 3; Art. No. dev199890; PMCID
PMC8918798; 10.1242/dev.199890
- Duethorn, Binyamin; Groll, Fabian; et el. (2022) Lima1
mediates the pluripotency control of membrane dynamics and cellular
metabolism; Nature Communications; Vol. 13; Art. No. 610; PMCID
PMC8807836; 10.1038/s41467-022-28139-5
- Tadmor, Arbel D. and Phillips, Rob (2022) MCRL:
using a reference library to compress a metagenome into a non-redundant
list of sequences, considering viruses as a case study;
Bioinformatics; Vol. 38; No. 3; 631-647; PMCID PMC10060711; 10.1093/bioinformatics/btab703
- Himmler, Tobias; Crémière, Antoine; et el. (2022) Putative
fossils of chemotrophic microbes preserved in seep carbonates from
Vestnesa Ridge, off northwest Svalbard, Norway; Geology; Vol. 50;
No. 2; 169-173; 10.1130/g49620.1
- Gayoso, Adam; Lopez, Romain; et el. (2022) A
Python library for probabilistic analysis of single-cell omics data;
Nature Biotechnology; Vol. 40; No. 2; 163-166; 10.1038/s41587-021-01206-w
- Duan, Yangyang; Ye, Tao; et el. (2022) Brain-wide
Cas9-mediated cleavage of a gene causing familial Alzheimer’s disease
alleviates amyloid-related pathologies in mice; Nature Biomedical
Engineering; Vol. 6; No. 2; 168-180; 10.1038/s41551-021-00759-0
- Stiles, Noelle R. B.; Tanguay, Armand R., Jr.; et el. (2022) Crossmodal
Postdiction: Conscious Perception as Revisionist History; Journal of
Perceptual Imaging; Vol. 5; Art. No. jpi0150; PMCID PMC9028020; 10.2352/j.percept.imaging.2022.5.000403
- Savela, Emily S.; Winnett, Alexander Viloria; et el. (2022) Quantitative
SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs
Inform Appropriate Respiratory Sampling Site and Analytical Test
Sensitivity Required for Earliest Viral Detection; Journal of
Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID
PMC8849374; 10.1128/JCM.01785-21
- McCaffrey, Erin F.; Donato, Michele; et el. (2022) The
immunoregulatory landscape of human tuberculosis granulomas; Nature
Immunology; Vol. 23; No. 2; 318-329; PMCID PMC8810384; 10.1038/s41590-021-01121-x
- Wu, Fabai; Speth, Daan R.; et el. (2022) Unique
mobile elements and scalable gene flow at the prokaryote–eukaryote
boundary revealed by circularized Asgard archaea genomes; Nature
Microbiology; Vol. 7; No. 2; 200-212; 10.1038/s41564-021-01039-y
- El-Nachef, Wael N.; Hu, Claire; et el. (2022) Whole
gut imaging allows quantification of all enteric neurons in the adult
zebrafish intestine; Neurogastroenterology and Motility; Vol. 34;
No. 2; Art. No. e14292; PMCID PMC8799505; 10.1111/nmo.14292
- Williams, Ruth M.; Lukoseviciute, Martyna; et el. (2022) Single-cell
atlas of early chick development reveals gradual segregation of neural
crest lineage from the neural plate border during neurulation;
eLife; Vol. 11; Art. No. e74464; PMCID PMC8798042; 10.7554/eLife.74464
- Metskas, Lauren Ann; Ortega, Davi; et el. (2022) Rubisco
forms a lattice inside alpha-carboxysomes; 10.1101/2022.01.24.477598
- Pandey, Ayush and Murray, Richard M. (2022) Robustness
guarantees for structured model reduction of dynamical systems with
applications to biomolecular models; International Journal of Robust
and Nonlinear Control; 10.1002/rnc.6013
- Dahlstrom, Kurt M. and Newman, Dianne K. (2022) Soil
bacteria protect fungi from phenazines by acting as toxin sponges;
Current Biology; Vol. 32; No. 2; 275-288; 10.1016/j.cub.2021.11.002
- Schildknecht, Dominik; Popova, Anastasia N.; et el. (2022) Reinforcement
learning reveals fundamental limits on the mixing of active
particles; Soft Matter; Vol. 18; No. 3; 617-625; 10.1039/d1sm01400e
- Zhu, Ronghui; del Rio-Salgado, Jesus M.; et el. (2022) Synthetic
multistability in mammalian cells; Science; Vol. 375; No. 6578; Art.
No. eabg9765; 10.1126/science.abg9765
- McCord, Rachel Patton; Taipale, Mikko; et el. (2022) Voices
on technology: The molecular biologists’ ever-expanding toy box;
Molecular Cell; Vol. 82; No. 2; 221-226; 10.1016/j.molcel.2021.12.025
- Feinsinger, Ashley; Pouratian, Nader; et el. (2022) Ethical
commitments, principles, and practices guiding intracranial
neuroscientific research in humans; Neuron; Vol. 110; No. 2;
188-194; PMCID PMC9417025; 10.1016/j.neuron.2021.11.011
- Liu, Zhen; Qin, Zi-Yang; et el. (2022) An
Enzymatic Platform for Primary Amination of 1-Aryl-2-alkyl Alkynes;
Journal of the American Chemical Society; Vol. 144; No. 1; 80-85; PMCID
PMC8765727; 10.1021/jacs.1c11340
- Vanshylla, Kanika; Fan, Chengcheng; et el. (2022) Discovery
of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite
neutralizers; Cell Host and Microbe; Vol. 30; No. 1; 69-82; PMCID
PMC8683262; 10.1016/j.chom.2021.12.010
- Chuapoco, Miguel R.; Flytzanis, Nicholas C.; et el. (2022) Intravenous
gene transfer throughout the brain of infant Old World primates using
AAV; 10.1101/2022.01.08.475342
- Depelteau, Jamie S.; Renault, Ludovic; et el. (2022) UVC
inactivation of pathogenic samples suitable for cryo-EM analysis;
Communications Biology; Vol. 5; Art. No. 29; 10.1038/s42003-021-02962-w
- Parker, Joe (2022) Joe
Parker [Q&A with Joe Parker]; Current Biology; Vol. 32; No. 1;
R6-R8; 10.1016/j.cub.2021.11.057
- Ogega, Clinton O.; Skinner, Nicole E.; et el. (2022) B
cell overexpression of FCRL5 and PD-1 is associated with low antibody
titers in HCV infection; PLOS Pathogens; Vol. 18; No. 1; Art.
No. e1010179; PMCID PMC8769295; 10.1371/journal.ppat.1010179
- Lu, Jenny; Behbahani, Amir H.; et el. (2022) Transforming
representations of movement from body- to world-centric space;
Nature; Vol. 601; No. 7891; 98-104; 10.1038/s41586-021-04191-x
- Chadwick, Grayson L.; Skennerton, Connor T.; et el. (2022) Comparative
genomics reveals electron transfer and syntrophic mechanisms
differentiating methanotrophic and methanogenic archaea; PLoS
Biology; Vol. 20; No. 1; Art. No. e3001508; PMCID PMC9012536; 10.1371/journal.pbio.3001508
- Inglis, Alison J.; Guna, Alina; et el. (2022) Coupled
protein quality control during nonsense mediated mRNA decay; 10.1101/2021.12.22.473893
- Nichols, Aaron L.; Blumenfeld, Zack; et el. (2022) Fluorescence
activation mechanism and imaging of drug permeation with new sensors for
smoking-cessation ligands; eLife; Vol. 11; Art. No. e74648; PMCID
PMC8820738; 10.7554/eLife.74648
- Henrickson, Amy; Gorbet, Gary E.; et el. (2022) Multi-Wavelength
Analytical Ultracentrifugation of Biopolymer Mixtures and
Interactions; 10.1101/2021.12.29.474408
- Magkiriadou, S.; Habel, A.; et el. (2022) Polyphosphate
affects cytoplasmic and chromosomal dynamics in nitrogen-starved
Pseudomonas aeruginosa; 10.1101/2021.12.23.473106
- Chai, Cynthia M.; Chen, Wen; et el. (2022) A
conserved behavioral role for a nematode interneuron neuropeptide
receptor; Genetics; Vol. 220; No. 1; Art. No. iyab198; PMCID
PMC8733633; 10.1093/genetics/iyab198
- Miller, David C.; Athavale, Soumitra V.; et el. (2022) Combining
chemistry and protein engineering for new-to-nature biocatalysis;
Nature Synthesis; Vol. 1; No. 1; 18-23; PMCID PMC8995090; 10.1038/s44160-021-00008-x
- Andersen, Richard A.; Aflalo, Tyson; et el. (2022) Exploring
Cognition with Brain–Machine Interfaces; Annual Review of
Psychology; Vol. 73; 131-158; 10.1146/annurev-psych-030221-030214
- Lohoff, T.; Ghazanfar, S.; et el. (2022) Integration
of spatial and single-cell transcriptomic data elucidates mouse
organogenesis; Nature Biotechnology; Vol. 40; No. 1; 74-85; 10.1038/s41587-021-01006-2
- Stuckey, K.; Dua, R.; et el. (2022) Optimal
dynamic incentive scheduling for Hawk-Dove evolutionary games;
Physical Review E; Vol. 105; No. 1; Art. No. 014412; 10.1103/PhysRevE.105.014412
- Quinodoz, Sofia A.; Bhat, Prashant; et el. (2022) SPRITE:
a genome-wide method for mapping higher-order 3D interactions in the
nucleus using combinatorial split-and-pool barcoding; Nature
Protocols; Vol. 17; No. 1; 36-75; 10.1038/s41596-021-00633-y
- Arrastia, Mary V.; Jachowicz, Joanna W.; et el. (2022) Single-cell
measurement of higher-order 3D genome organization with scSPRITE;
Nature Biotechnology; Vol. 40; No. 1; 64-73; 10.1038/s41587-021-00998-1
- Yu, Hang; Skennerton, Connor T.; et el. (2022) Sulfate
differentially stimulates but is not respired by diverse anaerobic
methanotrophic archaea; ISME Journal; Vol. 16; No. 1; 168-177; 10.1038/s41396-021-01047-0
- Cao, Mengyi; Schwartz, Hillel T.; et el. (2022) The
entomopathogenic nematode Steinernema hermaphroditum is a
self-fertilizing hermaphrodite and a genetically tractable system for
the study of parasitic and mutualistic symbiosis; Genetics; Vol.
220; No. 1; Art. No. iyab170; PMCID PMC8733455; 10.1093/genetics/iyab170
- Athavale, Soumitra V.; Chen, Kai; et el. (2021) Engineering
Enzymes for New‐to‐Nature Carbene Chemistry; ISBN 9783527347995;
Transition Metal-Catalyzed Carbene Transformations; Wiley: Weinheim;
95-138; 10.1002/9783527829170.ch4
- Meister, Markus (2021) Curved
Micro-Electrode Arrays; 10.48550/arXiv.2107.13532
- Mageswaran, Shrawan Kumar; Grotjahn, Danielle Ann; et el. (2021) Nanoscale
details of mitochondrial fission revealed by cryo-electron
tomography; 10.1101/2021.12.13.472487
- Liang, Xuan; Weberling, Antonia; et el. (2021) E-cadherin
mediated Apical Membrane Initiation Site localisation; 10.1101/2021.11.30.470571
- Badithela, Apurva; Wongpiromsarn, Tichakorn; et el. (2021) Leveraging
Classification Metrics for Quantitative System-Level Analysis with
Temporal Logic Specifications; ISBN 978-1-6654-3659-5; 2021 60th
IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ;
564-571; 10.1109/cdc45484.2021.9683611
- Pandey, Ayush and Murray, Richard M. (2021) Robustness
Guarantees for Structured Model Reduction of Dynamical Systems; ISBN
978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control
(CDC); IEEE: Piscataway, NJ; 6920-6927; 10.1109/cdc45484.2021.9683298
- Rosolia, Ugo; Ahmadi, Mohamadreza; et el. (2021) Time-Optimal
Navigation in Uncertain Environments with High-Level Specifications;
ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and
Control (CDC); IEEE: Piscataway, NJ; 4287-4294; 10.1109/CDC45484.2021.9683486
- Gao, Fan and Pachter, Lior (2021) Efficient
pre-processing of Single-cell ATAC-seq data; 10.1101/2021.12.08.471788
- Wilbert, Steven A. and Newman, Dianne K. (2021) The
contrasting roles of nitric oxide drive microbial community organization
as a function of oxygen presence; 10.1101/2021.12.09.472001
- Goertsen, David; Flytzanis, Nicholas C.; et el. (2021) AAV
capsid variants with brain-wide transgene expression and decreased liver
targeting after intravenous delivery in mouse and marmoset; Nature
Neuroscience; Vol. 25; No. 1; 106-115; 10.1038/s41593-021-00969-4
- Brückner, Adrian; Badroos, Jean M.; et el. (2021) Evolutionary
assembly of cooperating cell types in an animal chemical defense
system; Cell; Vol. 184; No. 25; 6138-6156; 10.1016/j.cell.2021.11.014
- Markaki, Yolanda; Chong, Johnny Gan; et el. (2021) Xist
nucleates local protein gradients to propagate silencing across the X
chromosome; Cell; Vol. 184; No. 25; 6174-6192; PMCID PMC8671326; 10.1016/j.cell.2021.10.022
- Abrams, Michael J.; Tan, Fayth Hui; et el. (2021) A
conserved strategy for inducing appendage regeneration in moon
jellyfish, Drosophila, and mice; eLife; Vol. 10; e65092; PMCID
PMC8782573; 10.7554/eLife.65092
- Oberhofer, Georg; Ivy, Tobin; et el. (2021) Gene
drive that results in addiction to a temperature-sensitive version of an
essential gene triggers population collapse in Drosophila;
Proceedings of the National Academy of Sciences; Vol. 118; No. 49; Art.
No. e2107413118; PMCID PMC8670509; 10.1073/pnas.2107413118
- Sun, Haitao; Lu, Zhaoning; et el. (2021) Error-prone,
stress-induced 3′ flap–based Okazaki fragment maturation supports cell
survival; Science; Vol. 374; No. 6572; 1252-1258; PMCID PMC8852821;
10.1126/science.abj1013
- Keleş, Ümit; Lin, Chujun; et el. (2021) A
Cautionary Note on Predicting Social Judgments from Faces with Deep
Neural Networks; Affective Science; Vol. 2; No. 4; 438-454; 10.1007/s42761-021-00075-5
- Liu, Zhen; Calvó-Tusell, Carla; et el. (2021) Dual-function
enzyme catalysis for enantioselective carbon–nitrogen bond
formation; Nature Chemistry; Vol. 13; No. 12; 1166-1172; 10.1038/s41557-021-00794-z
- Cabeen, Ryan P.; Toga, Arthur W.; et el. (2021) Frontoinsular
cortical microstructure is linked to life satisfaction in young
adulthood; Brain Imaging and Behavior; Vol. 15; No. 6; 2775-2789; 10.1007/s11682-021-00467-y
- Gerhardt, Louisa M.S. and McMahon, Andrew P. (2021) Multi-omic
approaches to acute kidney injury and repair; Current Opinion in
Biomedical Engineering; Vol. 20; 100344; 10.1016/j.cobme.2021.100344
- Wu, Daw-An; Adams, Sara W.; et el. (2021) Preliminary
analysis of qEEG during a subliminally‐primed task‐switching test in
pre‐symptomatic Alzheimer’s disease; Alzheimer’s & Dementia;
Vol. 17; No. S5; Art. No. e057869; 10.1002/alz.057869
- Wu, Zachary; Johnston, Kadina E.; et el. (2021) Protein
sequence design with deep generative models; Current Opinion in
Chemical Biology; Vol. 65; 18-27; 10.1016/j.cbpa.2021.04.004
- Solovieva, Tatiana and Bronner, Marianne (2021) Reprint
of: Schwann cell precursors: Where they come from and where they go;
Cells & Development; Vol. 168; Art. No. 203729; 10.1016/j.cdev.2021.203729
- Cable, Jennifer; Elowitz, Michael B.; et el. (2021) Single
cell biology—a Keystone Symposia report; Annals of the New York
Academy of Sciences; Vol. 1506; 74-97; 10.1111/nyas.14692
- Barnes, Christopher; Scheid, Johannes F.; et el. (2021) Structural
insights into antibody-mediated neutralization of SARS-CoV-2;
Glycobiology; Vol. 31; No. 12; 1696-1697; 10.1093/glycob/cwab121
- Arechavala, Rebecca Johnson; Rochart, Roger; et el. (2021) Task
switching reveals abnormal brain-heart electrophysiological signatures
in cognitively healthy individuals with abnormal CSF amyloid/tau, a
pilot study; International Journal of Psychophysiology; Vol. 170;
102-111; PMCID PMC8865562; 10.1016/j.ijpsycho.2021.10.007
- Segalin, Cristina; Williams, Jalani; et el. (2021) The
Mouse Action Recognition System (MARS) software pipeline for automated
analysis of social behaviors in mice; eLife; Vol. 10; Art.
No. e63720; PMCID PMC8631946; 10.7554/eLife.63720
- Sonn, Seong Keun; Seo, Seungwoon; et el. (2021) ER-associated
CTRP1 regulates mitochondrial fission via interaction with DRP1;
Experimental and Molecular Medicine; Vol. 53; 1769-1780; PMCID
PMC8639813; 10.1038/s12276-021-00701-z
- Chari, Tara; Weissbourd, Brandon; et el. (2021) Whole-animal
multiplexed single-cell RNA-seq reveals transcriptional shifts across
Clytia medusa cell types; Science Advances; Vol. 7; No. 48; Art.
No. eabh1683; PMCID PMC8626072; 10.1126/sciadv.abh1683
- Weissbourd, Brandon; Momose, Tsuyoshi; et el. (2021) A
genetically tractable jellyfish model for systems and evolutionary
neuroscience; Cell; Vol. 184; No. 24; 5854-5868; PMCID PMC8629132;
10.1016/j.cell.2021.10.021
- Escolano, Amelia; Gristick, Harry B.; et el. (2021) Sequential
immunization of macaques elicits heterologous neutralizing antibodies
targeting the V3-glycan patch of HIV-1 Env; Science Translational
Medicine; Vol. 13; No. 621; Art. No. abk1533; PMCID PMC8932345; 10.1126/scitranslmed.abk1533
- Huang, Shan; Wang, Kaihang; et el. (2021) Genome
manipulation by guide-directed Argonaute cleavage; 10.1101/2021.11.17.469050
- Rodriguez, Kellen R.; Sarraf, Namita; et el. (2021) A
Loser-Take-All DNA Circuit; ACS Synthetic Biology; Vol. 10; No. 11;
2878-2885; PMCID PMC9286317; 10.1021/acssynbio.1c00318
- Yang, Zhe; Wang, Tongtong; et el. (2021) Predicting
changes in osmolality; eLife; Vol. 10; Art. No. e74551; PMCID
PMC8601660; 10.7554/elife.74551
- Rahman, Atif and Pachter, Lior (2021) SWALO:
scaffolding with assembly likelihood optimization; Nucleic Acids
Research; Vol. 49; No. 20; Art. No. e117; 10.1093/nar/gkab717
- Wittmann, Bruce J.; Yue, Yisong; et el. (2021) Informed
training set design enables efficient machine learning-assisted directed
protein evolution; Cell Systems; Vol. 12; No. 11; 1026-1045; 10.1016/j.cels.2021.07.008
- Brune, Karl D.; Liekniņa, Ilva; et el. (2021) N-Terminal
Modification of Gly-His-Tagged Proteins with Azidogluconolactone;
ChemBioChem; Vol. 22; No. 22; 3199-3207; 10.1002/cbic.202100381
- Athavale, Soumitra V.; Gao, Shilong; et el. (2021) Biocatalytic,
Intermolecular C−H Bond Functionalization for the Synthesis of
Enantioenriched Amides; Angewandte Chemie International Edition;
Vol. 60; No. 47; 24864-24869; PMCID PMC8578410; 10.1002/anie.202110873
- Schwarzkopf, Maayan; Liu, Mike C.; et el. (2021) Hybridization
chain reaction enables a unified approach to multiplexed, quantitative,
high-resolution immunohistochemistry and in situ hybridization;
Development; Vol. 148; No. 22; Art. No. dev199847; PMCID PMC8645210; 10.1242/dev.199847
- Lloyd, M. K.; Trembath-Reichert, E.; et el. (2021) Methoxyl
stable isotopic constraints on the origins and limits of coal-bed
methane; Science; Vol. 374; No. 6569; 894-897; 10.1126/science.abg0241
- Quinodoz, Sofia A.; Jachowicz, Joanna W.; et el. (2021) RNA
promotes the formation of spatial compartments in the nucleus; Cell;
Vol. 184; No. 23; 5775-5790; PMCID PMC9115877; 10.1016/j.cell.2021.10.014
- Higgins, Irina; Chang, Le; et el. (2021) Unsupervised
deep learning identifies semantic disentanglement in single
inferotemporal face patch neurons; Nature Communications; Vol. 12;
Art. No. 6456; 10.1038/s41467-021-26751-5
- Banks, Rachel A.; Galstyan, Vahe; et el. (2021) Motor
processivity and speed determine structure and dynamics of
microtubule-motor assemblies; 10.1101/2021.10.22.465381
- Barlow, Jacob T.; Leite, Gabriela; et el. (2021) Quantitative
sequencing clarifies the role of disruptor taxa, oral microbiota, and
strict anaerobes in the human small-intestine microbiome;
Microbiome; Vol. 9; Art. No. 214; PMCID PMC8561862; 10.1186/s40168-021-01162-2
- Reilly, Douglas K.; Schwarz, Erich M.; et el. (2021) Transcriptomic
profiling of sex-specific olfactory neurons reveals subset-specific
receptor expression in C. elegans; 10.1101/2021.10.26.465928
- Hueschen, Christina; Segev Zarko, Li-Av; et el. (2021) Actin
Organization and Dynamics in Motile Toxoplasma Gondii Parasites;
American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5;
448-449; 10.4269/ajtmh.abstract2021
- Chongtham, Anjalika; Isas, J. Mario; et el. (2021) Amplification
of neurotoxic HTTex1 assemblies in human neurons; Neurobiology of
Disease; Vol. 159; Art. No. 105517; PMCID PMC8943833; 10.1016/j.nbd.2021.105517
- Parker, Hugo J.; De Kumar, Bony; et el. (2021) Analysis
of lamprey meis genes reveals that conserved inputs from Hox, Meis and
Pbx proteins control their expression in the hindbrain and neural
tube; Developmental Biology; Vol. 479; 61-76; 10.1016/j.ydbio.2021.07.014
- Ji, Jenny; Winnett, Alexander; et el. (2021) Modulating
Factors of Household Transmission of SARS‑CoV‑2 in a Community-Based
Study; American Journal of Tropical Medicine and Hygiene; Vol. 105;
No. 5; 313; 10.4269/ajtmh.abstract2021
- Miao, Zhen; Humphreys, Benjamin D.; et el. (2021) Multi-omics
integration in the age of million single-cell data; Nature Reviews
Nephrology; Vol. 17; No. 11; 710-724; 10.1038/s41581-021-00463-x
- Gandhi, Shashank and Bronner, Marianne E. (2021) Seq
Your Destiny: Neural Crest Fate Determination in the Genomic Era;
Annual Review of Genetics; Vol. 55; 349-376; 10.1146/annurev-genet-071719-020954
- Phan, Quynh T.; Lin, Jianfeng; et el. (2021) The
Globular C1q Receptor Is Required for Epidermal Growth Factor Receptor
Signaling during Candida albicans Infection; mBio; Vol. 12; No. 6;
Art. No. e02716-21; PMCID PMC8561387; 10.1128/mBio.02716-21
- Cheng, Kai-Wen; Li, Shan; et el. (2021) Impacts
of p97 on Proteome Changes in Human Cells during Coronaviral
Replication; Cells; Vol. 10; No. 11; Art. No. 2953; PMCID
PMC8616207; 10.3390/cells10112953
- Schweikert, Christina; Shimojo, Shinsuke; et el. (2021) Improving
Preference Detection with Eye Movement Gaze and Cognitive Diversity;
ISBN 978-1-6654-2119-5; 2021 IEEE 20th International Conference on
Cognitive Informatics & Cognitive Computing (ICCI*CC); IEEE:
Piscataway, NJ; 98-102; 10.1109/iccicc53683.2021.9811298
- Woodward, Denise; Ricks, Ernest, Jr.; et el. (2021) The
Path of Science in Future Tibetan Buddhist Education; Frontiers in
Communication; Vol. 6; Art. No. 731604; 10.3389/fcomm.2021.731604
- Chen, Shun-Jia; Kim, Leehyeon; et el. (2021) Aminopeptidases
trim Xaa-Pro proteins, initiating their degradation by the Pro/N-degron
pathway; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 118; No. 43; Art. No. e2115430118; PMCID
PMC8639330; 10.1073/pnas.2115430118
- Abernathy, Morgan E.; Gristick, Harry B.; et el. (2021) Antibody
elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion
peptide and destroys a neutralizing epitope; npj Vaccines; Vol. 6;
Art. No. 126; PMCID PMC8545924; 10.1038/s41541-021-00387-4
- Behbahani, Amir H.; Palmer, Emily H.; et el. (2021) Drosophila
re-zero their path integrator at the center of a fictive food patch;
Current Biology; Vol. 31; No. 20; 4534-4546; PMCID PMC8551043; 10.1016/j.cub.2021.08.006
- Brown, David; Altermatt, Michael; et el. (2021) Deep
Parallel Characterization of AAV Tropism and AAV-Mediated
Transcriptional Changes via Single-Cell RNA Sequencing; Frontiers in
Immunology; Vol. 12; Art. No. 730825; PMCID PMC8574206; 10.3389/fimmu.2021.730825
- Abernathy, Morgan E.; Dam, Kim-Marie A.; et el. (2021) How
Antibodies Recognize Pathogenic Viruses: Structural Correlates of
Antibody Neutralization of HIV-1, SARS-CoV-2, and Zika; Viruses;
Vol. 13; No. 10; Art. No. 2106; PMCID PMC8537525; 10.3390/v13102106
- Mondragón-Palomino, Octavio; Poceviciute, Roberta; et el. (2021) 3D
imaging for the quantification of spatial patterns in microbiota of the
intestinal mucosa; 10.1101/2021.10.07.463215
- Rawlings, Thomas M.; Makwana, Komal; et el. (2021) Modelling
the impact of decidual senescence on embryo implantation in human
endometrial assembloids; eLife; Vol. 10; Art. No. e69603; PMCID
PMC8523170; 10.7554/elife.69603
- Stangherlin, Alessandra; Watson, Joseph L.; et el. (2021) Compensatory
ion transport buffers daily protein rhythms to regulate osmotic balance
and cellular physiology; Nature Communications; Vol. 12; Art.
No. 6035; PMCID PMC8520019; 10.1038/s41467-021-25942-4
- Phillips, Daniel A.; Zacharoff, Lori A.; et el. (2021) A
bacterial membrane sculpting protein with BAR domain-like activity;
eLife; Vol. 10; Art. No. e60049; PMCID PMC8687657; 10.7554/elife.60049
- Guan, Charles; Aflalo, Tyson; et el. (2021) Preserved
motor representations after paralysis; 10.1101/2021.10.07.463105
- Parker, Joseph and Kronauer, Daniel J. C. (2021) How
ants shape biodiversity; Current Biology; Vol. 31; No. 19;
R1208-R1214; 10.1016/j.cub.2021.08.015
- Adkins, Ricky S.; Aldridge, Andrew I.; et el. (2021) A
multimodal cell census and atlas of the mammalian primary motor
cortex; Nature; Vol. 598; No. 7879; 86-102; 10.1038/s41586-021-03950-0
- Yao, Zizhen; Liu, Hanqing; et el. (2021) A
transcriptomic and epigenomic cell atlas of the mouse primary motor
cortex; Nature; Vol. 598; No. 7879; 103-110; PMCID PMC8494649; 10.1038/s41586-021-03500-8
- Booeshaghi, A. Sina; Yao, Zizhen; et el. (2021) Isoform
cell-type specificity in the mouse primary motor cortex; Nature;
Vol. 598; No. 7879; 195-199; PMCID PMC8494650; 10.1038/s41586-021-03969-3
- Rebboah, Elisabeth; Reese, Fairlie; et el. (2021) Mapping
and modeling the genomic basis of differential RNA isoform expression at
single-cell resolution with LR-Split-seq; Genome Biology; Vol. 22;
Art. No. 286; PMCID PMC8495978; 10.1186/s13059-021-02505-w
- Chen, Peiwei and Aravin, Alexei A. (2021) Transposon-taming
piRNAs in the germline: Where do they come from?; Molecular Cell;
Vol. 81; No. 19; 3884-3885; 10.1016/j.molcel.2021.09.017
- Rothenberg, Ellen V. (2021) Logic
and lineage impacts on functional transcription factor deployment for
T-cell fate commitment; Biophysical Journal; Vol. 120; No. 19;
4162-4181; 10.1016/j.bpj.2021.04.002
- Perry, Elena K.; Siozios, Stefanos; et el. (2021) Structure
of an ant-myrmecophile-microbe community; 10.1101/2021.10.04.462948
- Tran, Ngoc-Han; Carter, Stephen D.; et el. (2021) The
stress-sensing domain of activated IRE1α forms helical filaments in
narrow ER membrane tubes; Science; Vol. 374; No. 6563; 52-57; 10.1126/science.abh2474
- Hsu, D. Frank; Shehata, Mohammad; et el. (2021) Human
Cognition and Hyper Intelligence; ISBN 978-1-6654-2174-4; 2021 IEEE
Intl Conf on Dependable, Autonomic and Secure Computing, Intl Conf on
Pervasive Intelligence and Computing, Intl Conf on Cloud and Big Data
Computing, Intl Conf on Cyber Science and Technology Congress
(DASC/PiCom/CBDCom/CyberSciTech); IEEE: Piscataway, NJ; 775-781; 10.1109/dasc-picom-cbdcom-cyberscitech52372.2021.00127
- Davidson, Cristin D.; Gibson, Alana L.; et el. (2021) Improved
systemic AAV gene therapy with a neurotrophic capsid in Niemann–Pick
disease type C1 mice; Life Science Alliance; Vol. 4; No. 10; Art.
No. e202101040; PMCID PMC8380657; 10.26508/lsa.202101040
- Booeshaghi, A. Sina; Kil, Yeokyoung; et el. (2021) Low-cost,
scalable, and automated fluid sampling for fluidics applications;
HardwareX; Vol. 10; Art. No. e00201; 10.1016/j.ohx.2021.e00201
- Breunig, Stephanie; Chapman, Alex; et el. (2021) Modification
of Insulin Lispro by Incorporation of Non-canonical Proline
Residues; Protein Science; Vol. 30; No. S1; 89; 10.1002/pro.4191
- Bhat, Prashant; Honson, Drew; et el. (2021) Nuclear
compartmentalization as a mechanism of quantitative control of gene
expression; Nature Reviews. Molecular Cell Biology; Vol. 22; No. 10;
653-670; 10.1038/s41580-021-00387-1
- Martik, Megan L. and Bronner, Marianne E. (2021) Riding
the crest to get a head: neural crest evolution in vertebrates;
Nature Reviews. Neuroscience; Vol. 22; No. 10; 616-626; 10.1038/s41583-021-00503-2
- Osorio‐Rodriguez, Daniela; Razo-Mejia, Manuel; et el. (2021) Sulfur
isotope fractionations constrain the biological cycling of
dimethylsulfoniopropionate in the upper ocean; Limnology and
Oceanography; Vol. 66; No. 10; 3607-3618; 10.1002/lno.11901
- Zhang, Bai-Hua; Zhou, Yuanping; et el. (2021) T
cell immunity independent HBV clearance and validation of a new HBV cure
strategy in HBV infected uPA/SCID chimeric mice; Hepatology; Vol.
74; No. S1; 64A; 10.1002/hep.32187
- Takei, Yodai; Zheng, Shiwei; et el. (2021) Single-cell
nuclear architecture across cell types in the mouse brain; Science;
Vol. 374; No. 6567; 586-594; 10.1126/science.abj1966
- Taylor, Dallas N.; Davidson, Samuel R.; et el. (2021) A
Cooperative DNA Catalyst; Journal of the American Chemical Society;
Vol. 143; No. 38; 15567-15571; PMCID PMC8609974; 10.1021/jacs.1c07122
- Zhang, Tony; Rosenberg, Matthew; et el. (2021) Endotaxis:
A Universal Algorithm for Mapping, Goal-Learning, and Navigation; 10.1101/2021.09.24.461751
- Clamons, Samuel E. and Murray, Richard M. (2021) How
to model DNA replication in stochastic models of synthetic gene circuits
(and why); 10.1101/2021.09.26.461880
- Xu, Shuhui; Li, Kai; et el. (2021) Ratiometric
RNA labeling allows dynamic multiplexed analysis of gene circuits in
single cells; 10.1101/2021.09.23.461487
- Jette, Claudia A.; Cohen, Alexander A.; et el. (2021) Broad
cross-reactivity across sarbecoviruses exhibited by a subset of COVID-19
donor-derived neutralizing antibodies; Cell Reports; Vol. 36;
No. 13; Art. No. 109760; PMCID PMC8423902; 10.1016/j.celrep.2021.109760
- Kahan, Anat; Greenbaum, Alon; et el. (2021) Light-guided
sectioning for precise in situ localization and tissue interface
analysis for brain-implanted optical fibers and GRIN lenses; Cell
Reports; Vol. 36; No. 13; Art. No. 109744; PMCID PMC8552649; 10.1016/j.celrep.2021.109744
- Zhu, Meng; Shahbazi, Marta; et el. (2021) Human
embryo polarization requires PLC signaling to mediate trophectoderm
specification; eLife; Vol. 10; Art. No. e65068; 10.7554/eLife.65068
- Belliveau, Nathan M.; Chure, Griffin; et el. (2021) Fundamental
limits on the rate of bacterial growth and their influence on proteomic
composition; Cell Systems; Vol. 12; No. 9; 924-944; PMCID
PMC8460600; 10.1016/j.cels.2021.06.002
- Sozen, Berna; Jorgensen, Victoria; et el. (2021) Reconstructing
aspects of human embryogenesis with pluripotent stem cells; Nature
Communications; Vol. 12; Art. No. 5550; PMCID PMC8455697; 10.1038/s41467-021-25853-4
- Watkins-Dulaney, Ella J.; Dunham, Noah P.; et el. (2021) Asymmetric
Alkylation of Ketones Catalyzed by Engineered TrpB; Angewandte
Chemie International Edition; Vol. 60; No. 39; 21412-21417; PMCID
PMC8440449; 10.1002/anie.202106938
- Wrobel, Chester J. J.; Yu, Jingfang; et el. (2021) Combinatorial
Assembly of Modular Glucosides via Carboxylesterases Regulates C.
elegans Starvation Survival; Journal of the American Chemical
Society; Vol. 143; No. 36; 14676-14683; PMCID PMC8594405; 10.1021/jacs.1c05908
- Hu, Chelsea Y. and Murray, Richard M. (2021) Layered
Feedback Control Overcomes Performance Trade-off in Synthetic
Biomolecular Networks; 10.1101/2021.09.12.459953
- Ullah, Irfan; Prévost, Jérémie; et el. (2021) Live
imaging of SARS-CoV-2 infection in mice reveals that neutralizing
antibodies require Fc function for optimal efficacy; Immunity; Vol.
54; No. 9; 2143-2158; PMCID PMC8372518; 10.1016/j.immuni.2021.08.015
- Gugel, Zhannetta V.; Maurais, Elizabeth; et el. (2021) Chronic
exposure to odors at naturally occurring concentrations triggers limited
plasticity in early stages of Drosophila olfactory processing; 10.1101/2021.09.03.458834
- Zhou, Wen; Gao, Fan; et el. (2021) Single-cell
perturbation dissects transcription factor control of progression speed
and trajectory choice in early T-cell development; 10.1101/2021.09.03.458944
- Kaplan, Mohammed; Oikonomou, Catherine M.; et el. (2021) A
novel widespread bacterial structure related to the flagellar type III
secretion system; 10.1101/2021.09.03.458937
- Olson, Christine A.; Iñiguez, Alonso J.; et el. (2021) Alterations
in the gut microbiota contribute to cognitive impairment induced by the
ketogenic diet and hypoxia; Cell Host and Microbe; Vol. 29; No. 9;
1378-1392; PMCID PMC8429275; 10.1016/j.chom.2021.07.004
- Gorin, Gennady; Vastola, John J.; et el. (2021) Interpretable
and tractable models of transcriptional noise for the rational design of
single-molecule quantification experiments; 10.1101/2021.09.06.459173
- Zhang, Xiaoyi; Gui, Lin; et el. (2021) Conserved
L464 in p97 D1–D2 linker is critical for p97 cofactor regulated ATPase
activity; Biochemical Journal; Vol. 478; No. 17; 3185-3204; PMCID
PMC9041309; 10.1042/bcj20210288
- Buarque de Macedo, Robert; Andò, Edward; et el. (2021) Unearthing
real-time 3D ant tunneling mechanics; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 118; No. 36;
Art. No. e2102267118; PMCID PMC8433525; 10.1073/pnas.2102267118
- Lee, Kyu Hyun; Ni, Yu-Li; et el. (2021) Electrode
pooling can boost the yield of extracellular recordings with switchable
silicon probes; Nature Communications; Vol. 12; Art. No. 5245; 10.1038/s41467-021-25443-4
- Chen, Peiwei; Luo, Yicheng; et el. (2021) RDC
complex executes a dynamic piRNA program during Drosophila
spermatogenesis to safeguard male fertility; PLoS Genetics; Vol. 17;
No. 9; Art. No. e1009591; PMCID PMC8412364; 10.1371/journal.pgen.1009591
- Kaplan, Mohammed; Chreifi, Georges; et el. (2021) In
situ imaging of bacterial outer membrane projections and associated
protein complexes using electron cryo-tomography; eLife; Vol. 10;
Art. No. e73099; 10.7554/eLife.73099
- Ákos, Zsuzsa; Dunipace, Leslie; et el. (2021) NaNuTrap:
a technique for in vivo cell nucleus labelling using nanobodies;
Development; Vol. 148; No. 18; Art. No. dev199822; 10.1242/dev.199822
- Yeung, Enoch; Kim, Jongmin; et el. (2021) Data-driven
network models for genetic circuits from time-series data with
incomplete measurements; Journal of the Royal Society Interface;
Vol. 18; No. 182; Art. No. 20210413; 10.1098/rsif.2021.0413
- Piacentino, Michael L.; Hutchins, Erica J.; et el. (2021) Essential
function and targets of BMP signaling during midbrain neural crest
delamination; Developmental Biology; Vol. 477; 251-261; 10.1016/j.ydbio.2021.06.003
- O’Toole, George A.; Crabbé, Aurélie; et el. (2021) Model
Systems to Study the Chronic, Polymicrobial Infections in Cystic
Fibrosis: Current Approaches and Exploring Future Directions; mBio;
Vol. 12; No. 5; Art. No. mBio.01763-21; PMCID PMC8546538; 10.1128/mbio.01763-21
- Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2021) Protein
profiling in the habenula after chronic (–)-menthol exposure in
mice; Journal of Neurochemistry; Vol. 158; No. 6; 1345-1358; PMCID
PMC8577691; 10.1111/jnc.15495
- Shehata, Mohammad; Cheng, Miao; et el. (2021) Team
Flow Is a Unique Brain State Associated with Enhanced Information
Integration and Interbrain Synchrony; eNeuro; Vol. 8; No. 5;
ENEURO.0133-21.2021; PMCID PMC8513532; 10.1523/eneuro.0133-21.2021
- Oikonomou, Catherine M. and Jensen, Grant J. (2021) The
Atlas of Bacterial & Archaeal Cell Structure: an Interactive
Open-Access Microbiology Textbook; Journal of Microbiology &
Biology Education; Vol. 22; No. 2; Art. No. e00128-21; PMCID PMC8442016;
10.1128/jmbe.00128-21
- Thompson, W. H.; Esteban, O.; et el. (2021) Intracranial
electrical stimulation alters meso-scale network integration as a
function of network topology; 10.1101/2021.01.16.426941
- McManus, John B.; Bernhards, Casey B.; et el. (2021) Rapid
Characterization of Genetic Parts with Cell-free Systems; Journal of
Visualized Experiments; Vol. 174; Art. No. e62816; 10.3791/62816
- Chari, Tara; Banerjee, Joeyta; et el. (2021) The
Specious Art of Single-Cell Genomics; 10.1101/2021.08.25.457696
- Lin, Chujun; Keleş, Ümit; et el. (2021) Four
dimensions characterize attributions from faces using a representative
set of English trait words; Nature Communications; Vol. 12; Art.
No. 5168; 10.1038/s41467-021-25500-y
- Qu, Zijie; Schildknecht, Dominik; et el. (2021) Persistent
fluid flows defined by active matter boundaries; Communications
Physics; Vol. 4; Art. No. 198; 10.1038/s42005-021-00703-3
- Banerjee, Navonil; Shih, Pei-Yin; et el. (2021) Distinct
neural circuits establish the same chemosensory behavior in C.
elegans; 10.1101/2021.08.17.456617
- Desai, Ravi V.; Chen, Xinyue; et el. (2021) A
DNA repair pathway can regulate transcriptional noise to promote cell
fate transitions; Science; Vol. 373; No. 6557; Art. No. eabc6506;
PMCID PMC8667278; 10.1126/science.abc6506
- Gong, Wuming; Granados, Alejandro A.; et el. (2021) Benchmarked
approaches for reconstruction of in vitro cell lineages and in silico
models of C. elegans and M. musculus developmental trees; Cell
Systems; Vol. 12; No. 8; 810-826; 10.1016/j.cels.2021.05.008
- Mackinlay, Kirsty M. L.; Weatherbee, Bailey A. T.; et el. (2021) An
in vitro stem cell model of human epiblast and yolk sac interaction;
eLife; Vol. 10; Art. No. e63930; PMCID PMC8370770; 10.7554/elife.63930
- Bagherian, Dawna; Gornet, James; et el. (2021) Fine-Grained
System Identification of Nonlinear Neural Circuits; ISBN
978-1-4503-8332-5; Proceedings of the 27th ACM SIGKDD Conference on
Knowledge Discovery & Data Mining; Association for Computing
Machinery: New York, NY; 14-24; 10.1145/3447548.3467402
- Dar, Daniel; Dar, Nina; et el. (2021) Spatial
transcriptomics of planktonic and sessile bacterial populations at
single-cell resolution; Science; Vol. 373; No. 6556; Art.
No. eabi4882; PMCID PMC8454218; 10.1126/science.abi4882
- Le, Steven Q.; Kan, Shih-hsin; et el. (2021) Recombinant
NAGLU-IGF2 prevents physical and neurological disease and improves
survival in Sanfilippo B syndrome; 10.1101/2021.08.06.455469
- Muecksch, Frauke; Weisblum, Yiska; et el. (2021) Affinity
maturation of SARS-CoV-2 neutralizing antibodies confers potency,
breadth, and resilience to viral escape mutations; Immunity; Vol.
54; No. 8; 1853-1868; PMCID PMC8323339; 10.1016/j.immuni.2021.07.008
- West, Anthony P., Jr.; Wertheim, Joel O.; et el. (2021) Detection
and characterization of the SARS-CoV-2 lineage B.1.526 in New York;
Nature Communications; Vol. 12; Art. No. 4886; PMCID PMC8352861; 10.1038/s41467-021-25168-4
- Speth, Daan R.; Yu, Feiqiao B.; et el. (2021) Microbial
community of recently discovered Auka vent field sheds light on vent
biogeography and evolutionary history of thermophily; 10.1101/2021.08.02.454472
- Gorin, Gennady and Pachter, Lior (2021) Length
Biases in Single-Cell RNA Sequencing of pre-mRNA; 10.1101/2021.07.30.454514
- Hosokawa, Hiroyuki; Koizumi, Maria; et el. (2021) Stage-specific
action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse
pro-T cells; Journal of Experimental Medicine; Vol. 218; No. 8; Art.
No. e20202648; PMCID PMC8241539; 10.1084/jem.20202648
- Dillman, Adler R; Korff, Wyatt; et el. (2021) Steinernema
carpocapsae jumps with greater velocity and acceleration than previously
reported; microPublication Biology; Art. No. 000435; PMCID
PMC8329732; 10.17912/micropub.biology.000435
- Hensley, Matthew K.; Bain, William G.; et el. (2021) Intractable
Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute
Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a
Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case
Study; Clinical Infectious Diseases; Vol. 73; No. 3; e815-e821;
PMCID PMC7929077; 10.1093/cid/ciab072
- Booeshaghi, A. Sina and Pachter, Lior (2021) Normalization
of single-cell RNA-seq counts by log(x+1)* or log(1+x)*;
Bioinformatics; Vol. 37; No. 15; 2223-2224; PMCID PMC7989636; 10.1093/bioinformatics/btab085
- Wittmann, Bruce J.; Johnston, Kadina E; et el. (2021) Advances
in machine learning for directed evolution; Current Opinion in
Structural Biology; Vol. 69; 11-18; 10.1016/j.sbi.2021.01.008
- Michels, Dana E.; Lomenick, Brett; et el. (2021) Amino
Acid Analog Induces Stress Response in Marine Synechococcus; Applied
and Environmental Microbiology; Vol. 87; No. 15; Art. No. e00200-21; 10.1128/aem.00200-21
- Holman, Elizabeth A.; Fang, Yuan-Sheng; et el. (2021) Autonomous
adaptive data acquisition for scanning hyperspectral imaging
- Kishi, Yuriko and Parker, Joseph (2021) Cell
type innovation at the tips of the animal tree; Current Opinion in
Genetics and Development; Vol. 69; 112-121; 10.1016/j.gde.2021.01.009
- Holman, Elizabeth A.; Li, Dong; et el. (2021) Designing
optically transparent photo-crosslinked peptoid nanosheets for imaging
applications
- Jiménez Otero, Fernanda; Chadwick, Grayson L.; et el. (2021) Evidence
of a Streamlined Extracellular Electron Transfer Pathway from Biofilm
Structure, Metabolic Stratification, and Long-Range Electron Transfer
Parameters; Applied and Environmental Microbiology; Vol. 87; No. 17;
Art. No. AEM.00706-21; PMCID PMC8357294; 10.1128/aem.00706-21
- Varuzhanyan, Grigor; Ladinsky, Mark S.; et el. (2021) Fis1
ablation in the male germline disrupts mitochondrial morphology and
mitophagy, and arrests spermatid maturation; Development; Vol. 148;
No. 16; Art. No. dev199686; PMCID PMC8380467; 10.1242/dev.199686
- Wimsatt, Gregory; Saira, Olli-Pentti; et el. (2021) Harnessing
fluctuations in thermodynamic computing via time-reversal
symmetries; Physical Review Research; Vol. 3; No. 3; Art.
No. 033115; 10.1103/physrevresearch.3.033115
- Szymanski, Linda J.; Kellis, Spencer; et el. (2021) Neuropathological
effects of chronically implanted, intracortical microelectrodes in a
tetraplegic patient; Journal of Neural Engineering; Vol. 18; No. 4;
Art. No. 0460b9; 10.1088/1741-2552/ac127e
- Bjorkman, Pamela (2021) Neutralizing
antibodies against coronaviruses; Microscopy and Microanalysis; Vol.
27; No. S1; 1112-1113; 10.1017/s1431927621004177
- Bjorkman, Pamela J. (2021) Neutralizing
antibodies against coronaviruses
- Schildknecht, Dominik and Thomson, Matt (2021) Phenomenological
model of motility by spatiotemporal modulation of active
interactions; New Journal of Physics; Vol. 23; No. 8; Art.
No. 083001; 10.1088/1367-2630/ac1144
- Garber, Arkadiy I.; Kupper, Maria; et el. (2021) The
Evolution of Interdependence in a Four-Way Mealybug Symbiosis;
Genome Biology and Evolution; Vol. 13; No. 8; Art. No. evab123; PMCID
PMC8331144; 10.1093/gbe/evab123
- Zhang, Haifeng; Shang, Renjie; et el. (2021) Evolution
of a chordate-specific mechanism for myoblast fusion; 10.1101/2021.07.24.453587
- Nandi, Purbasha; Li, Shan; et el. (2021) Structural
and Functional Analysis of Disease-Linked p97 ATPase Mutant
Complexes; International Journal of Molecular Sciences; Vol. 22;
No. 15; Art. No. 8079; PMCID PMC8347982; 10.3390/ijms22158079
- Li, Yan; Chen, Pei-Ju; et el. (2021) Neural
mechanism of spatio-chromatic opponency in the Drosophila amacrine
neurons; Current Biology; Vol. 31; No. 14; 3040-3052; 10.1016/j.cub.2021.04.068
- Kliemann, Dorit; Adolphs, Ralph; et el. (2021) Reorganization
of the Social Brain in Individuals with Only One Intact Cerebral
Hemisphere; Brain Sciences; Vol. 11; No. 8; Art. No. 965; PMCID
PMC8392565; 10.3390/brainsci11080965
- Nagai, Jun; Bellafard, Arash; et el. (2021) Specific
and behaviorally consequential astrocyte G_q GPCR signaling attenuation
in vivo with iβARK; Neuron; Vol. 109; No. 14; 2256-2274; PMCID
PMC8418870; 10.1016/j.neuron.2021.05.023
- Wani, Abubakar; Zhu, Jiang; et el. (2021) Neuronal
VCP loss of function recapitulates FTLD-TDP pathology; Cell Reports;
Vol. 36; No. 3; Art. No. 109399; PMCID PMC8383344; 10.1016/j.celrep.2021.109399
- Grant, Stephen N. and Lester, Henry A. (2021) Regulation
of epithelial sodium channel activity by SARS-CoV-1 and SARS-CoV-2
proteins; Biophysical Journal; Vol. 120; No. 14; 2805-2813; PMCID
PMC8238646; 10.1016/j.bpj.2021.06.005
- Klink, P. Christiaan; Aubry, Jean-François; et el. (2021) Combining
brain perturbation and neuroimaging in non-human primates;
NeuroImage; Vol. 235; Art. No. 118017; 10.1016/j.neuroimage.2021.118017
- Wu, Wei-Li; Adame, Mark D.; et el. (2021) Microbiota
regulate social behaviour via stress response neurons in the brain;
Nature; Vol. 595; No. 7867; 409-414; PMCID PMC8346519; 10.1038/s41586-021-03669-y
- Luongo, Francisco J.; Liu, Lu; et el. (2021) Mice
and primates use distinct strategies for visual segmentation; 10.1101/2021.07.04.451059
- Chang, Le; Egger, Bernhard; et el. (2021) Explaining
face representation in the primate brain using different computational
models; Current Biology; Vol. 31; No. 13; 2785-2795; PMCID
PMC8566016; 10.1016/j.cub.2021.04.014
- Liu, Wenpeng; Polaczek, Piotr; et el. (2021) FANCD2
and RAD51 recombinase directly inhibit DNA2 nuclease at stalled
replication forks and FANCD2 acts as a novel RAD51 mediator in strand
exchange to promote genome stability; 10.1101/2021.07.08.450798
- da Veiga Beltrame, Eduardo; Arnaboldi, Valerio; et el. (2021) Single
cell tools for WormBase; 10.1101/2021.07.04.451030
- Cohen, Sarah M.; Le, Henry H.; et el. (2021) A
Mutation of lips-6 in C. elegans; microPublication Biology; Art.
No. 000419; PMCID PMC8271349; 10.17912/micropub.biology.000419
- Keleş, Ümit; Kliemann, Dorit; et el. (2021) Atypical
gaze patterns in autism are heterogeneous across subjects but reliable
within individuals; 10.1101/2021.07.01.450793
- Greaney, Allison J.; Starr, Tyler N.; et el. (2021) Mapping
mutations to the SARS-CoV-2 RBD that escape binding by different classes
of antibodies; Nature Communications; Vol. 12; Art. No. 4196; PMCID
PMC8263750; 10.1038/s41467-021-24435-8
- Gerhardt, Louisa M. S.; Liu, Jing; et el. (2021) Single-nuclear
transcriptomics reveals diversity of proximal tubule cell states in a
dynamic response to acute kidney injury; Proceedings of the National
Academy of Sciences; Vol. 118; No. 27; e2026684118; 10.1073/pnas.2026684118
- Zhang, Gang; Li, Shan; et el. (2021) AAA
ATPases as therapeutic targets: Structure, functions, and small-molecule
inhibitors; European Journal of Medicinal Chemistry; Vol. 219; Art.
No. 113446; PMCID PMC8165034; 10.1016/j.ejmech.2021.113446
- Haugh, Kelsey A.; Ladinsky, Mark S.; et el. (2021) In
vivo imaging of retrovirus infection reveals a role for Siglec-1/CD169
in multiple routes of transmission; eLife; Vol. 10; Art. No. e64179;
PMCID PMC8298093; 10.7554/eLife.64179
- Huang, Xiawei; Hu, Hongmiao; et el. (2021) Binding
of guide piRNA triggers methylation of the unstructured N-terminal
region of Aub leading to assembly of the piRNA amplification
complex; Nature Communications; Vol. 12; Art. No. 4061; 10.1038/s41467-021-24351-x
- Rosenberg, Matthew; Zhang, Tony; et el. (2021) Mice
in a labyrinth show rapid learning, sudden insight, and efficient
exploration; eLife; Vol. 10; Art. No. e66175; PMCID PMC8294850; 10.7554/eLife.66175
- Pleiner, Tino; Hazu, Masami; et el. (2021) WNK1
is an assembly factor for the human ER membrane protein complex;
Molecular Cell; Vol. 81; No. 13; 2693-2704; PMCID PMC8254792; 10.1016/j.molcel.2021.04.013
- Lisitskaya, L.; Esyunina, D.; et el. (2021) Analysis
of a putative nuclease associated with the Argonaute protein from
Rhodobacter sphaeroides; FEBS Open Bio; Vol. 11; No. S1; 238; 10.1002/2211-5463.13205
- Arnold, Frances (2021) Innovation
by evolution: bringing new chemistry to life; Acta Crystallographica
Section A; Vol. A77; No. Supplement; Art. No. a70; 10.1107/S0108767321099293
- Liu, Yang; Bernstein, Jeremy; et el. (2021) Learning
by Turning: Neural Architecture Aware Optimisation; Proceedings of
Machine Learning Research; Vol. 139; 6748-6758; 10.48550/arXiv.2102.07227
- Bloom, Joshua S.; Sathe, Laila; et el. (2021) Massively
scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of
pooled and barcoded nasal and saliva samples; Nature Biomedical
Engineering; Vol. 5; No. 7; 657-665; PMCID PMC7480060; 10.1038/s41551-021-00754-5
- Phillips, Alexandra A.; Speth, Daan R.; et el. (2021) Microbial
succession and dynamics in meromictic Mono Lake, California;
Geobiology; Vol. 19; No. 4; 376-393; 10.1111/gbi.12437
- Melsted, Páll; Booeshaghi, A. Sina; et el. (2021) Modular,
efficient and constant-memory single-cell RNA-seq preprocessing;
Nature Biotechnology; Vol. 39; No. 7; 813-818; 10.1038/s41587-021-00870-2
- Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate
Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid
Oxidation by Citrobacter portucalensis MBL; mBio; Vol. 12; No. 4;
Art. No. e02265-21; 10.1128/mBio.02265-21
- Mayalu, Michaëlle N.; Sarma, Anish; et el. (2021) Systems
Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain
Axis; ISBN 978-9-4638-4236-5; 2021 European Control Conference
(ECC); IEEE: Piscataway, NJ; 312-318; 10.23919/ecc54610.2021.9655216
- Dukes, Daniel; Abrams, Kathryn; et el. (2021) The
rise of affectivism; Nature Human Behaviour; Vol. 5; No. 7; 816-820;
PMCID PMC8319089; 10.1038/s41562-021-01130-8
- Phan-Minh, Tung and Murray, Richard M. (2021) Contracts
of Reactivity; ISBN 978-9-4638-4236-5; 2021 European Control
Conference (ECC); IEEE: Piscataway, NJ; 2611-2618; 10.23919/ECC54610.2021.9654932
- Kaplan, Mohammed; Wang, Yuhang; et el. (2021) Programmed
Flagellar Ejection in Caulobacter crescentus Leaves PL-subcomplexes;
Journal of Molecular Biology; Vol. 433; No. 13; Art. No. 167004; PMCID
PMC9843737; 10.1016/j.jmb.2021.167004
- Yang, Xiaohong; Yang, Xiaoxiao; et el. (2021) A
GH89 human α-N-acetylglucosaminidase (hNAGLU) homologue from gut microbe
Bacteroides thetaiotaomicron capable of hydrolyzing heparosan
oligosaccharides; AMB Express; Vol. 11; Art. No. 94; PMCID
PMC8225759; 10.1186/s13568-021-01253-1
- Chen, Xiaoqiao; Chen, Sisi; et el. (2021) Active
feature selection discovers minimal gene sets for classifying cell types
and disease states with single-cell mRNA-seq data; 10.1101/2021.06.15.448478
- Sarai, Nicholas S.; Levin, Benjamin J.; et el. (2021) Biocatalytic
Transformations of Silicon—the Other Group 14 Element; ACS Central
Science; Vol. 7; No. 6; 944-953; PMCID PMC8227617; 10.1021/acscentsci.1c00182
- Marlow, Jeffrey J.; Hoer, Daniel; et el. (2021) Carbonate-hosted
microbial communities are prolific and pervasive methane oxidizers at
geologically diverse marine methane seep sites; Proceedings of the
National Academy of Sciences; Vol. 118; No. 25; Art. No. e2006857118;
PMCID PMC8237665; 10.1073/pnas.2006857118
- Sender, Ron; Bar-On, Yinon M.; et el. (2021) The
total number and mass of SARS-CoV-2 virions; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 118;
No. 25; Art. No. e2024815118; PMCID PMC8237675; 10.1073/pnas.2024815118
- Molè, Matteo A.; Coorens, Tim H. H.; et el. (2021) A
single cell characterisation of human embryogenesis identifies
pluripotency transitions and putative anterior hypoblast centre;
Nature Communications; Vol. 12; Art. No. 3679; 10.1038/s41467-021-23758-w
- Phillips, Rob (2021) Schrödinger’s
What Is Life? at 75; Cell Systems; Vol. 12; No. 6; 465-476; 10.1016/j.cels.2021.05.013
- Zeng, Zipeng; Huang, Biao; et el. (2021) Generation
of patterned kidney organoids that recapitulate the adult kidney
collecting duct system from expandable ureteric bud progenitors;
Nature Communications; Vol. 12; 3641; 10.1038/s41467-021-23911-5
- Hoffmann, Magnus A. G.; Kieffer, Collin; et el. (2021) In
vitro characterization of engineered red blood cells as viral traps
against HIV-1 and SARS-CoV-2; Molecular Therapy - Methods and
Clinical Development; Vol. 21; 161-170; PMCID PMC7944778; 10.1016/j.omtm.2021.03.003
- Scheid, Johannes F.; Barnes, Christopher O.; et el. (2021) B
cell genomics behind cross-neutralization of SARS-CoV-2 variants and
SARS-CoV; Cell; Vol. 184; No. 12; 3205-3221; PMCID PMC8064835; 10.1016/j.cell.2021.04.032
- Gustafsson, Johan; Robinson, Jonathan; et el. (2021) BUTTERFLY:
addressing the pooled amplification paradox with unique molecular
identifiers in single-cell RNA-seq; Genome Biology; Vol. 22; Art.
No. 174; PMCID PMC8188791; 10.1186/s13059-021-02386-z
- Vulovic, Ivan; Yao, Qing; et el. (2021) Generation
of ordered protein assemblies using rigid three-body fusion;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 23; Art. No. e2015037118; PMCID PMC8201882; 10.1073/pnas.2015037118
- Cheng, Kai-Wen; Wang, Feng; et el. (2021) Evaluation
of artificial signal peptides for secretion of two lysosomal enzymes in
CHO cells; Biochemical Journal; Vol. 478; No. 12; 2309-2319; PMCID
PMC9074758; 10.1042/bcj20210015
- Livanos, Alexandra E.; Jha, Divya; et el. (2021) Intestinal
Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients
With Gastrointestinal Symptoms; Gastroenterology; Vol. 160; No. 7;
2435-2450; PMCID PMC7931673; 10.1053/j.gastro.2021.02.056
- Cheng, Richard; Murray, Richard M.; et el. (2021) Limits
of Probabilistic Safety Guarantees when Considering Human
Uncertainty; ISBN 978-1-7281-9077-8; 2021 IEEE International
Conference on Robotics and Automation (ICRA); IEEE: Piscataway, NJ;
3182-3189; 10.1109/ICRA48506.2021.9561843
- Kaplan, Mohammed; Tocheva, Elitza I.; et el. (2021) Loss
of the Bacterial Flagellar Motor Switch Complex upon Cell Lysis;
mBio; Vol. 12; No. 3; Art. No. mBio.00298-21; PMCID PMC8263016; 10.1128/mBio.00298-21
- Weatherbee, Bailey A. T.; Cui, Tongtong; et el. (2021) Modeling
human embryo development with embryonic and extra-embryonic stem
cells; Developmental Biology; Vol. 474; 91-99; PMCID PMC8232073; 10.1016/j.ydbio.2020.12.010
- Liu, Zhen and Arnold, Frances H. (2021) New-to-nature
chemistry from old protein machinery: carbene and nitrene
transferases; Current Opinion in Biotechnology; Vol. 69; 43-51;
PMCID PMC8225731; 10.1016/j.copbio.2020.12.005
- Chreifi, Georges; Chen, Songye; et el. (2021) Rapid
tilt-series method for cryo-electron tomography: Characterizing stage
behavior during FISE acquisition; Journal of Structural Biology;
Vol. 213; No. 2; Art. No. 107716; PMCID PMC8217199; 10.1016/j.jsb.2021.107716
- Solovieva, Tatiana and Bronner-Fraser, Marianne (2021) Schwann
cell precursors: Where they come from and where they go; Cells &
Development; Vol. 166; Art. No. 203686; PMCID PMC8496487; 10.1016/j.cdev.2021.203686
- Sun, Jennifer J.; Kennedy, Ann; et el. (2021) Task
Programming: Learning Data Efficient Behavior Representations; ISBN
978-1-6654-4509-2; 2021 IEEE/CVF Conference on Computer Vision and
Pattern Recognition (CVPR); IEEE: Piscataway, NJ; 2875-2884; 10.1109/CVPR46437.2021.00290
- Sozen, Berna; Cornwall-Scoones, Jake; et el. (2021) The
dynamics of morphogenesis in stem cell-based embryology: Novel insights
for symmetry breaking; Developmental Biology; Vol. 474; 82-90; PMCID
PMC8259461; 10.1016/j.ydbio.2020.12.005
- Tookmanian, Elise M.; Belin, Brittany J.; et el. (2021) The
role of hopanoids in fortifying rhizobia against a changing climate;
Environmental Microbiology; Vol. 23; No. 6; 2906-2918; 10.1111/1462-2920.15594
- Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2021) Unifying
synthetic embryology; Developmental Biology; Vol. 474; 1-4; PMCID
PMC8257322; 10.1016/j.ydbio.2021.03.007
- Chen, Peiwei; Kotov, Alexei A.; et el. (2021) piRNA-mediated
gene regulation and adaptation to sex-specific transposon expression in
D. melanogaster male germline; Genes and Development; Vol. 35;
No. 11-12; 914-935; PMCID PMC8168559; 10.1101/gad.345041.120
- Jewett, Andrew I.; Stelter, David; et el. (2021) Moltemplate:
A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft
Condensed Matter Physics; Journal of Molecular Biology; Vol. 433;
No. 11; Art. No. 166841; 10.1016/j.jmb.2021.166841
- Andreev, Andrey; Vasnarungruengkul, Pavee; et el. (2021) Open-Source
Thermometer, Temperature Controller, and Light Meter for Use in Animal
Facilities and During Experiments; 10.1101/2021.05.18.444705
- Smith, Sheena N.; Schubert, Rajib; et el. (2021) The
SHREAD gene therapy platform for paracrine delivery improves tumor
localization and intratumoral effects of a clinical antibody;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 21; Art. No. e2017925118; PMCID PMC8166199; 10.1073/pnas.2017925118
- Mackelprang, Rebecca; Aurand, Emily R.; et el. (2021) Guiding
Ethical Principles in Engineering Biology Research; ACS Synthetic
Biology; Vol. 10; No. 5; 907-910; 10.1021/acssynbio.1c00129
- Hochrein, Lisa M.; Li, Heyun; et el. (2021) High-Performance
Allosteric Conditional Guide RNAs for Mammalian Cell-Selective
Regulation of CRISPR/Cas; ACS Synthetic Biology; Vol. 10; No. 5;
964-971; 10.1021/acssynbio.1c00037
- De Gasparo, Raoul; Pedotti, Mattia; et el. (2021) Bispecific
IgG neutralizes SARS-CoV-2 variants and prevents escape in mice;
Nature; Vol. 593; No. 7859; 424-428; PMCID PMC8330819; 10.1038/s41586-021-03461-y
- Middelkoop, Teije C.; Garcia-Baucells, Júlia; et el. (2021) CYK-1/Formin
activation in cortical RhoA signaling centers promotes organismal
left–right symmetry breaking; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 118; No. 20; Art.
No. e2021814118; PMCID PMC8157923; 10.1073/pnas.2021814118
- Ahmadi, Mohamadreza; Rosolia, Ugo; et el. (2021) Constrained
Risk-Averse Markov Decision Processes; 10.48550/arXiv.2012.02423
- Stevens, Leslie M.; Kim, Goheun; et el. (2021) Light-dependent
N-end rule-mediated disruption of protein function in Saccharomyces
cerevisiae and Drosophila melanogaster; PLOS Genetics; Vol. 17;
No. 5; Art. No. e1009544; 10.1371/journal.pgen.1009544
- Smith, Edward J.; Farshim, Pamela P.; et el. (2021) Use
of high-content imaging to quantify transduction of AAV-PHP viruses in
the brain following systemic delivery; Brain Communications; Vol. 3;
No. 2; Art. No. fcab105; PMCID PMC8200048; 10.1093/braincomms/fcab105
- Brückner, Adrian; Badroos, Jean M.; et el. (2021) Evolutionary
assembly of cooperating cell types in an animal chemical defense
system; 10.1101/2021.05.13.444042
- Bloom, Jesse D.; Chan, Yujia Alina; et el. (2021) Investigate
the origins of COVID-19; Science; Vol. 372; No. 6543; 694; PMCID
PMC9520851; 10.1126/science.abj0016
- He, Xiaojia; Chadwick, Grayson L.; et el. (2021) Controls
on Interspecies Electron Transport and Size Limitation of Anaerobically
Methane-Oxidizing Microbial Consortia; mBio; Vol. 12; No. 3; Art.
No. e03620-20; 10.1128/mBio.03620-20
- Garcia-Borràs, Marc; Kan, S. B. Jennifer; et el. (2021) Origin
and Control of Chemoselectivity in Cytochrome c Catalyzed Carbene
Transfer into Si–H and N–H bonds; Journal of the American Chemical
Society; Vol. 143; No. 18; 7114-7123; PMCID PMC9292473; 10.1021/jacs.1c02146
- Cohen, Sarah M.; Sun, Jessica J.; et el. (2021) Transcriptional
Response to a Dauer-Inducing Ascaroside Cocktail in Late L1 in C.
elegans; microPublication Biology; Vol. 2021; Art. No. 000397; PMCID
PMC8116936; 10.17912/micropub.biology.000397
- Orietti, Lorenzo C.; Rosa, Viviane Souza; et el. (2021) Embryo
Size Regulates the Timing and Mechanism of Pluripotent Tissue
Morphogenesis; Stem Cell Reports; Vol. 16; No. 5; 1182-1196; PMCID
PMC8185375; 10.1016/j.stemcr.2020.09.004
- Graebener, Josefine B.; Phan-Minh, Tung; et el. (2021) Failure-Tolerant
Contract-Based Design of an Automated Valet Parking System using a
Directive-Response Architecture; 10.48550/arXiv.2103.12919
- Guo, Jianying; Wang, Peizhe; et el. (2021) Machine
learning-assisted high-content analysis of pluripotent stem cell-derived
embryos in vitro; Stem Cell Reports; Vol. 16; No. 5; 1331-1346;
PMCID PMC8185434; 10.1016/j.stemcr.2021.03.018
- He, Xiaojia; Chadwick, Grayson; et el. (2021) Spatially
Resolved Electron Transport through Anode‐Respiring Geobacter
sulfurreducens Biofilms: Controls and Constraints; ChemElectroChem;
Vol. 8; No. 10; 1747-1758; 10.1002/celc.202100111
- Sun, Jennifer J.; Karigo, Tomomi; et el. (2021) The
Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions; 10.48550/arXiv.2104.02710
- McManus, John B.; Bernhards, Casey B.; et el. (2021) A
Method for Cost-Effective and Rapid Characterization of Genetic
Parts; 10.1101/2021.04.30.440836
- Kasahara, Shunichi; Takada, Kazuma; et el. (2021) Preserving
Agency During Electrical Muscle Stimulation Training Speeds up Reaction
Time Directly After Removing EMS; ISBN 978-1-4503-8096-6;
Proceedings of the 2021 CHI Conference on Human Factors in Computing
Systems; Association for Computing Machinery: New York, NY; Art.
No. 194; 10.1145/3411764.3445147
- Galton, Riley; Fejes-Tóth, Katalin; et el. (2021) A
somatic piRNA pathway regulates epithelial-to-mesenchymal transition of
chick neural crest cells; 10.1101/2021.04.30.442165
- Graybuck, Lucas T.; Daigle, Tanya L.; et el. (2021) Enhancer
viruses for combinatorial cell-subclass-specific labeling; Neuron;
Vol. 109; No. 9; 1449-1464; PMCID PMC8610077; 10.1016/j.neuron.2021.03.011
- Norman, Sumner L.; Maresca, David; et el. (2021) Single-trial
decoding of movement intentions using functional ultrasound
neuroimaging; Neuron; Vol. 109; No. 9; 1554-1566; PMCID PMC8105283;
10.1016/j.neuron.2021.03.003
- Agudelo, Marianna; Palus, Martin; et el. (2021) Broad
and potent neutralizing human antibodies to tick-borne flaviviruses
protect mice from disease; Journal of Experimental Medicine; Vol.
218; No. 5; Art. No. e20210236; PMCID PMC8040517; 10.1084/jem.20210236
- Ashford, Oliver S.; Guan, Shuzhe; et el. (2021) A
chemosynthetic ecotone—“chemotone”—in the sediments surrounding deep-sea
methane seeps; Limnology and Oceanography; Vol. 66; No. 5;
1687-1702; 10.1002/lno.11713
- Ren, Xinying; Cuba Samaniego, Christian; et el. (2021) Bistable
State Switch Enables Ultrasensitive Feedback Control in Heterogeneous
Microbial Populations; ISBN 978-1-6654-4197-1; 2021 American Control
Conference (ACC); IEEE: Piscataway, NJ; 652-659; 10.23919/ACC50511.2021.9482836
- Peck, Ariana; Yao, Qing; et el. (2021) Challenges
in solving structures from radiation-damaged tomograms of protein
nanocrystals assessed by simulation; Acta Crystallographica Section
D: Biological Crystallography; Vol. D77; No. 5; 572-586; PMCID
PMC8098477; 10.1107/S2059798321002369
- Kim, Jane H.; Spero, Melanie; et el. (2021) Chlorate
And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And
Lead To Healing Of Chronic Wounds; Wound Repair and Regeneration;
Vol. 29; No. 3; A44-A45; 10.1111/wrr.12921
- Robertson, Wesley E.; Funke, Louise F. H.; et el. (2021) Creating
custom synthetic genomes in Escherichia coli with REXER and GENESIS;
Nature Protocols; Vol. 16; No. 5; 2345-2380; 10.1038/s41596-020-00464-3
- Dutka, Przemysław; Malounda, Dina; et el. (2021) Measuring
gas vesicle dimensions by electron microscopy; Protein Science; Vol.
30; No. 5; 1081-1086; PMCID PMC8040859; 10.1002/pro.4056
- Varuzhanyan, Grigor; Chen, Hsiuchen; et el. (2021) Mitochondrial
fission factor (Mff) is required for organization of the mitochondrial
sheath in spermatids; Biochimica et Biophysica Acta - General
Subjects; Vol. 1865; No. 5; Art. No. 129845; PMCID PMC7904653; 10.1016/j.bbagen.2021.129845
- Chen, Fu-Der; Jung, Youngho; et el. (2021) Sidelobe-Free
Beam-Steering using Optical Phased Arrays for Neural Probes; ISBN
978-1-943580-91-0; 2021 Conference on Lasers and Electro-Optics (CLEO);
Optical Society of America: Washington, DC; Art. No. SW3B.2; 10.1364/cleo_si.2021.sw3b.2
- Takei, Yodai; Zheng, Shiwei; et el. (2021) Integrated
spatial genomics in tissues reveals invariant and cell type dependent
nuclear architecture; 10.1101/2021.04.26.441547
- Rozowsky, Joel; Drenkow, Jorg; et el. (2021) Multi-tissue
integrative analysis of personal epigenomes; 10.1101/2021.04.26.441442
- Chen, Zibo and Elowitz, Michael B. (2021) Programmable
protein circuit design; Cell; Vol. 184; No. 9; 2284-2301; PMCID
PMC8087657; 10.1016/j.cell.2021.03.007
- Jang, Min Jee; Coughlin, Gerard M.; et el. (2021) Deep
Tropism Profiling of Barcoded AAV Capsid and Cargo Pools in Intact
Tissue Using High-Throughput Ultrasensitive Sequential FISH;
Molecular Therapy; Vol. 29; No. 4, S1; 142; 10.1016/j.ymthe.2021.04.019
- Chen, Xinhong; Wolfe, Damien A.; et el. (2021) Endothelial-Tropic
AAVs for Genetic Access to Whole-Brain Vasculature in Wild-Type Mouse
Strains Following Non-Invasive Systemic Delivery; Molecular Therapy;
Vol. 29; No. 4, S1; 25; 10.1016/j.ymthe.2021.04.019
- Borsos, Máté; Chen, Xinhong; et el. (2021) Simultaneous
Detection of AAV Genome, Transcript, and Protein Localization in Intact
Cells and Tissues at High Resolution; Molecular Therapy; Vol. 29;
No. 4, S1; 142-143; 10.1016/j.ymthe.2021.04.019
- Hori, Acacia; Grebin, Anastasiya; et el. (2021) Targeted
Gene Therapy with Engineered Systemic AAVs for the Central and
Peripheral Nervous Systems Prevents Motor Coordination Phenotypes in a
Mouse Model of Friedreich’s Ataxia; Molecular Therapy; Vol. 29;
No. 4, S1; 125; 10.1016/j.ymthe.2021.04.019
- Leitch, Katherine J.; Ponce, Francesca V.; et el. (2021) The
long-distance flight behavior of Drosophila supports an agent-based
model for wind-assisted dispersal in insects; Proceedings of the
National Academy of Sciences of the United States of America; Vol. 118;
No. 17; Art. No. e2013342118; PMCID PMC8092610; 10.1073/pnas.2013342118
- Helseth, Ashley R.; Hernandez-Martinez, Ricardo; et el. (2021) Cholinergic
neurons constitutively engage the ISR for dopamine modulation and skill
learning in mice; Science; Vol. 372; No. 6540; Art. No. eabe1931;
PMCID PMC8457366; 10.1126/science.abe1931
- Kajikawa, Koichiro; Hulse, Brad K.; et el. (2021) Inhibition
is the hallmark of CA3 intracellular dynamics around awake ripples;
10.1101/2021.04.20.440699
- Droujinine, Ilia A.; Meyer, Amanda S.; et el. (2021) Proteomics
of protein trafficking by in vivo tissue-specific labeling; Nature
Communications; Vol. 12; 2382; 10.1038/s41467-021-22599-x
- She, Liang; Benna, Marcus K.; et el. (2021) The
neural code for face memory; 10.1101/2021.03.12.435023
- Wang, Zijun; Schmidt, Fabian; et el. (2021) mRNA
vaccine-elicited antibodies to SARS-CoV-2 and circulating variants;
Nature; Vol. 592; No. 7855; 616-622; PMCID PMC7836122; 10.1038/s41586-021-03324-6
- Chongtham, Anjalika; Isas, J. Mario; et el. (2021) Sonicated
fibrils of huntingtin exon-1 preferentially seed neurons and produce
toxic assemblies; 10.1101/2021.04.16.440200
- Kropocheva, Ekaterina; Kuzmenko, Anton; et el. (2021) A
programmable pAgo nuclease with universal guide and target specificity
from the mesophilic bacterium Kurthia massiliensis; Nucleic Acids
Research; Vol. 49; No. 7; 4054-4065; PMCID PMC8053121; 10.1093/nar/gkab182
- Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia
edwinii protects Aspergillus sp. from phenazines by acting as a toxin
sponge; 10.1101/2021.03.28.437412
- Yoo, Bryan B.; Griffiths, Jessica A; et el. (2021) Neuronal
Activation of the Gastrointestinal Tract Shapes the Gut Environment in
Mice; 10.1101/2021.04.12.439539
- Sidwell, Tom and Rothenberg, Ellen V. (2021) Epigenetic
Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b;
Frontiers in Immunology; Vol. 12; Art. No. 669498; PMCID PMC8079813; 10.3389/fimmu.2021.669498
- Chow, Ke-Huan K.; Budde, Mark W.; et el. (2021) Imaging
cell lineage with a synthetic digital recording system; Science;
Vol. 372; No. 6538; Art. No. eabb3099; 10.1126/science.abb3099
- Lattao, Ramona; Rangone, Hélène; et el. (2021) Mauve/LYST
limits fusion of lysosome-related organelles and promotes centrosomal
recruitment of microtubule nucleating proteins; Developmental Cell;
Vol. 56; No. 7; 1000-1013; PMCID PMC8024676; 10.1016/j.devcel.2021.02.019
- Gandhi, Shashank; Li, Yuwei; et el. (2021) A
single-plasmid approach for genome editing coupled with long-term
lineage analysis in chick embryos; Development; Vol. 148; No. 7;
Art. No. dev193565; PMCID PMC8077534; 10.1242/dev.193565
- So, Juhoon; Kim, Minwook; et el. (2021) Attenuating
the Epidermal Growth Factor Receptor–Extracellular Signal‐Regulated
Kinase–Sex‐Determining Region Y‐Box 9 Axis Promotes Liver Progenitor
Cell‐Mediated Liver Regeneration in Zebrafish; Hepatology; Vol. 73;
No. 4; 1494-1508; PMCID PMC7769917; 10.1002/hep.31437
- Hlaváč, Peter; Parker, Joseph; et el. (2021) Diversification
of myrmecophilous Clavigeritae beetles (Coleoptera: Staphylinidae:
Pselaphinae) and their radiation in New Caledonia; Systematic
Entomology; Vol. 46; No. 2; 422-452; 10.1111/syen.12469
- Sacher, Wesley D.; Chen, Fu-Der; et el. (2021) Implantable
photonic neural probes for light-sheet fluorescence brain imaging;
Neurophotonics; Vol. 8; No. 2; Art. No. 025003; PMCID PMC8059764; 10.1117/1.NPh.8.2.025003
- Shi, Junchao; Zhang, Yunfang; et el. (2021) PANDORA-seq
expands the repertoire of regulatory small RNAs by overcoming RNA
modifications; Nature Cell Biology; Vol. 23; No. 4; 424-436; 10.1038/s41556-021-00652-7
- Morais, Livia H.; Schreiber, Henry L., IV; et el. (2021) The
gut microbiota–brain axis in behaviour and brain disorders; Nature
Reviews Microbiology; Vol. 19; No. 4; 241-255; 10.1038/s41579-020-00460-0
- Arnaboldi, Valerio; Cho, Jaehyoung; et el. (2021) Wormicloud:
a new text summarization tool based on word clouds to explore the C.
elegans literature; Database : The Journal of Biological Databases
and Curation; Vol. 2021; Art. No. baab015; PMCID PMC8011436; 10.1093/database/baab015
- Mich, John K.; Graybuck, Lucas T.; et el. (2021) Functional
enhancer elements drive subclass-selective expression from mouse to
primate neocortex; Cell Reports; Vol. 34; No. 13; Art. No. 108754;
10.1016/j.celrep.2021.108754
- Jette, Claudia A.; Barnes, Christopher O.; et el. (2021) Cryo-EM
structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1
adopt a CD4-bound open conformation; Nature Communications; Vol. 12;
Art. No. 1950; PMCID PMC8007822; 10.1038/s41467-021-21816-x
- Mageswaran, Shrawan Kumar; Yang, Wei Yuan; et el. (2021) A
cryo–electron tomography workflow reveals protrusion-mediated shedding
on injured plasma membrane; Science Advances; Vol. 7; No. 13; Art.
No. eabc6345; PMCID PMC7997517; 10.1126/sciadv.abc6345
- Yang, Weibing; Cortijo, Sandra; et el. (2021) Molecular
mechanism of cytokinin-activated cell division in Arabidopsis;
Science; Vol. 371; No. 6536; 1350-1355; PMCID PMC8166333; 10.1126/science.abe2305
- Tang, Weiyi; Li, Yuwei; et el. (2021) Clonal
analysis and dynamic imaging identify multipotency of individual Gallus
gallus caudal hindbrain neural crest cells toward cardiac and enteric
fates; Nature Communications; Vol. 12; Art. No. 1894; PMCID
PMC7994390; 10.1038/s41467-021-22146-8
- Gaebler, Christian; Wang, Zijun; et el. (2021) Evolution
of antibody immunity to SARS-CoV-2; Nature; Vol. 591; No. 7851;
639-644; PMCID PMC8221082; 10.1038/s41586-021-03207-w
- Sierra, Noemie; Olsman, Noah; et el. (2021) A
novel approach to comparative RNA-Seq does not support a conserved set
of genes underlying animal regeneration; 10.1101/2021.03.22.434850
- Cho, Jounhong Ryan; Chen, Xinhong; et el. (2021) Dorsal
Raphe Dopamine Neurons Signal Motivational Salience Dependent on
Internal State, Expectation, and Behavioral Context; Journal of
Neuroscience; Vol. 41; No. 12; 2645-2655; PMCID PMC8018733; 10.1523/JNEUROSCI.2690-20.2021
- VanDrisse, Chelsey M.; Lipsh-Sokolik, Rosalie; et el. (2021) Computationally
designed pyocyanin demethylase acts synergistically with tobramycin to
kill recalcitrant Pseudomonas aeruginosa biofilms; Proceedings of
the National Academy of Sciences of the United States of America; Vol.
118; No. 12; Art. No. e2022012118; PMCID PMC8000102; 10.1073/pnas.2022012118
- Dunphy, William G. (2021) TopBP1
comes into focus; Molecular Cell; Vol. 81; No. 6; 1126-1127; 10.1016/j.molcel.2021.02.027
- Piddini, Eugenia; Shalek, Alex K.; et el. (2021) How
are methodological developments enabling insights into cell behavior in
cellular communities?; Cell Systems; Vol. 12; No. 3; 207-209; 10.1016/j.cels.2021.02.005
- Wang, Siwen; Yang, Shasha; et el. (2021) Removal
of Antibiotic Resistant Bacteria and Genes by UV-Assisted
Electrochemical Oxidation on Degenerative TiO₂ Nanotube Arrays; ACS
ES&T Engineering; Vol. 1; No. 3; 612-622; 10.1021/acsestengg.1c00011
- Fatalska, Agnieszka; Stepinac, Emma; et el. (2021) The
dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate
centriole duplication; eLife; Vol. 10; Art. No. e57241; PMCID
PMC8009671; 10.7554/elife.57241
- Meirelles, Lucas A.; Perry, Elena K.; et el. (2021) Bacterial
defenses against a natural antibiotic promote collateral resilience to
clinical antibiotics; PLoS Biology; Vol. 19; No. 3; Art.
No. e3001093; 10.1371/journal.pbio.3001093
- Muecksch, Frauke; Weisblum, Yiska; et el. (2021) Development
of potency, breadth and resilience to viral escape mutations in
SARS-CoV-2 neutralizing antibodies; PMCID PMC7987023; 10.1101/2021.03.07.434227
- Bashford, Luke; Rosenthal, Isabelle; et el. (2021) The
Neurophysiological Representation of Imagined Somatosensory Percepts in
Human Cortex; Journal of Neuroscience; Vol. 41; No. 10; 2177-2185;
PMCID PMC8018772; 10.1523/jneurosci.2460-20.2021
- Molè, Matteo Amitaba; Weberling, Antonia; et el. (2021) Integrin
β1 coordinates survival and morphogenesis of the embryonic lineage upon
implantation and pluripotency transition; Cell Reports; Vol. 34;
No. 10; Art. No. 108834; PMCID PMC7966855; 10.1016/j.celrep.2021.108834
- Dries, Ruben; Zhu, Qian; et el. (2021) Giotto:
a toolbox for integrative analysis and visualization of spatial
expression data; Genome Biology; Vol. 22; Art. No. 78; 10.1186/s13059-021-02286-2
- Zhang, Gang; Li, Shan; et el. (2021) A
covalent p97/VCP ATPase inhibitor can overcome resistance to CB-5083 and
NMS-873 in colorectal cancer cells; European Journal of Medicinal
Chemistry; Vol. 213; Art. No. 113148; PMCID PMC7954469; 10.1016/j.ejmech.2020.113148
- McRose, Darcy L. and Newman, Dianne K. (2021) Redox-active
antibiotics enhance phosphorus bioavailability; Science; Vol. 371;
No. 6533; 1033-1037; PMCID PMC8051141; 10.1126/science.abd1515
- Cohen, Alexander A.; Yang, Zhi; et el. (2021) Construction,
characterization, and immunization of nanoparticles that display a
diverse array of influenza HA trimers; PLoS ONE; Vol. 16; No. 3;
Art. No. e0247963; PMCID PMC7932532; 10.1371/journal.pone.0247963
- Rocchi, Francesca; Oya, Hiroyuki; et el. (2021) Common
Fronto-temporal Effective Connectivity in Humans and Monkeys;
Neuron; Vol. 109; No. 5; 852-868; PMCID PMC7927917; 10.1016/j.neuron.2020.12.026
- Yang, Yang and Arnold, Frances H. (2021) Navigating
the Unnatural Reaction Space: Directed Evolution of Heme Proteins for
Selective Carbene and Nitrene Transfer; Accounts of Chemical
Research; Vol. 54; No. 5; 1209-1225; PMCID PMC7931446; 10.1021/acs.accounts.0c00591
- Chure, Griffin; Banks, Rachel A.; et el. (2021) The
Anthropocene by the Numbers: A Quantitative Snapshot of Humanity’s
Influence on the Planet; 10.48550/arXiv.2101.09620
- Chivukula, Srinivas; Zhang, Carey Y.; et el. (2021) Neural
encoding of actual and imagined touch within human posterior parietal
cortex; eLife; Vol. 10; Art. No. e61646; PMCID PMC7924956; 10.7554/eLife.61646
- Needham, Brittany D.; Adame, Mark D.; et el. (2021) Plasma
and Fecal Metabolite Profiles in Autism Spectrum Disorder;
Biological Psychiatry; Vol. 89; No. 5; 451-462; PMCID PMC7867605; 10.1016/j.biopsych.2020.09.025
- Chai, C. M.; Wen, C.; et el. (2021) Discovery
of a highly-conserved behavioral role for an interneuron neuropeptide
receptor; Integrative and Comparative Biology; Vol. 61; No. S1;
E124-E125; 10.1093/icb/icab001
- Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2021) How
transcription factors drive choice of the T cell fate; Nature
Reviews. Immunology; Vol. 21; No. 3; 162-176; 10.1038/s41577-020-00426-6
- Bain, William G.; Peñaloza, Hernán F.; et el. (2021) Lower
Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an
Inflammatory Phenotype; CHEST; Vol. 159; No. 3; 963-966; PMCID
PMC7671922; 10.1016/j.chest.2020.10.083
- Rothenberg, Ellen V. (2021) Single-cell
insights into the hematopoietic generation of T-lymphocyte precursors in
mouse and human; Experimental Hematology; Vol. 95; 1-12; PMCID
PMC8018899; 10.1016/j.exphem.2020.12.005
- Weissbourd, Brandon; Momose, Tsuyoshi; et el. (2021) Functional
modules within a distributed neural network control feeding in a model
medusa; 10.1101/2021.02.22.432372
- Refahi, Yassin; Zardilis, Argyris; et el. (2021) A
multiscale analysis of early flower development in Arabidopsis provides
an integrated view of molecular regulation and growth control;
Developmental Cell; Vol. 56; No. 4; 540-556; PMCID PMC8519405; 10.1016/j.devcel.2021.01.019
- Brovero, Savannah G.; Fortier, Julia C.; et el. (2021) Investigation
of Drosophila fruitless neurons that express Dpr/DIP cell adhesion
molecules; eLife; Vol. 10; Art. No. e63101; 10.7554/eLife.63101
- Qu, Zijie; Jiang, Jialong; et el. (2021) Programming
Boundary Deformation Patterns in Active Networks; 10.48550/arXiv.2101.08464
- Oberhofer, Georg; Ivy, Tobin; et el. (2021) Split
versions of Cleave and Rescue selfish genetic elements for measured self
limiting gene drive; PLoS Genetics; Vol. 17; No. 2; Art.
No. e1009385; 10.1371/journal.pgen.1009385
- Guo, Qiuyu; Kim, Albert; et el. (2021) A
β-catenin-driven switch in TCF/LEF transcription factor binding to DNA
target sites promotes commitment of mammalian nephron progenitor
cells; eLife; Vol. 10; e64444; 10.7554/elife.64444
- Ashaber, Mária; Tomina, Yusuke; et el. (2021) Anatomy
and activity patterns in a multifunctional motor neuron and its
surrounding circuits; eLife; Vol. 10; Art. No. e61881; 10.7554/eLife.61881
- Gorin, Gennady and Pachter, Lior (2021) Analysis
of Length Biases in Single-Cell RNA Sequencing of Unspliced mRNA by
Markov Modeling; Biophysical Journal; Vol. 120; No. 3; 81A; 10.1016/j.bpj.2020.11.706
- Srivastava, Vasudha; Hu, Jennifer L.; et el. (2021) Identifying
Enthalpic Barriers to Entropically-Driven Structural Disruption in
Breast Cancers; Biophysical Journal; Vol. 120; No. 3; 196A; 10.1016/j.bpj.2020.11.1347
- Jensen, Grant (2021) Imaging
Biopolymers In Vivo Directly with Cryo-ET: Trim5 Nets and IRE-1
Helices; Biophysical Journal; Vol. 120; No. 3, Supp. 1; 1a; 10.1016/j.bpj.2020.11.046
- Vastola, John J.; Gorin, Gennady; et el. (2021) Learning
the Dynamics of Bursty Transcription and Splicing using Ultra-Fast
Parameter Inference and New Analytical Solutions of the Chemical Master
Equation; Biophysical Journal; Vol. 120; No. 3; 135A; 10.1016/j.bpj.2020.11.1018
- Cohen, Alexander A.; Gnanapragasam, Priyanthi N. P.; et el. (2021)
Mosaic
nanoparticles elicit cross-reactive immune responses to zoonotic
coronaviruses in mice; Science; Vol. 371; No. 6530; 735-741; PMCID
PMC7928838; 10.1126/science.abf6840
- Esswein, Shannon R. and Bjorkman, Pamela J. (2021) Structural
Basis for Germline Antibody Binding to Zika Virus Envelope Domain
III; Biophysical Journal; Vol. 120; No. 3; 276A-277A; 10.1016/j.bpj.2020.11.1760
- Galstyan, Vahe; Suresh, Pooja; et el. (2021) Understanding
the Mechanisms that Give Rise to the Mammalian Spindle’s Response to
Force using Theory and Microneedle Manipulation; Biophysical
Journal; Vol. 120; No. 3; 347A; 10.1016/j.bpj.2020.11.2158
- Takei, Yodai; Yun, Jina; et el. (2021) Integrated
spatial genomics reveals global architecture of single nuclei;
Nature; Vol. 590; No. 7845; 344-350; PMCID PMC7878433; 10.1038/s41586-020-03126-2
- Klionsky, Daniel J.; Abdel-Aziz, Amal Kamal; et el. (2021) Guidelines
for the use and interpretation of assays for monitoring autophagy (4th
edition); Autophagy; Vol. 17; No. 1; 1-382; 10.1080/15548627.2020.1797280
- Amadei, Gianluca; Lau, Kasey Y. C.; et el. (2021) Inducible
Stem-Cell-Derived Embryos Capture Mouse Morphogenetic Events
In Vitro; Developmental Cell; Vol. 56; No. 3; 366-382; PMCID
PMC7883308; 10.1016/j.devcel.2020.12.004
- Stundl, Jan; Bertucci, Paola Y.; et el. (2021) Evolution
of new cell types at the lateral neural border; ISBN 9780128149683;
Evolutionary Developmental Biology; Elsevier: Cambridge, MA; 173-205; 10.1016/bs.ctdb.2020.11.005
- Singhal, Vipul; Tuza, Zoltan A.; et el. (2021) A
MATLAB toolbox for modeling genetic circuits in cell-free systems;
Synthetic Biology; Vol. 6; No. 1; Art. No. ysab007; PMCID PMC8102020; 10.1093/synbio/ysab007
- Newman, Dianne K. and Costa, Kyle C. (2021) Phenazine
degrading agents and related compositions, methods and systems for
interfering with viability of bacteria
- Hutchins, Erica J.; Piacentino, Michael L.; et el. (2021) Transcriptomic
Identification of Draxin-Responsive Targets During Cranial Neural Crest
EMT; Frontiers in Physiology; Vol. 12; Art. No. 624037; PMCID
PMC7886793; 10.3389/fphys.2021.624037
- Liao, Hsin-I; Kashino, Makio; et el. (2021) Attractiveness
in the Eyes: A Possibility of Positive Loop between Transient Pupil
Constriction and Facial Attraction; Journal of Cognitive
Neuroscience; Vol. 33; No. 2; 315-340; 10.1162/jocn_a_01649
- Sozen, Berna; Demir, Necdet; et el. (2021) BMP
signalling is required for extra-embryonic ectoderm development during
pre-to-post-implantation transition of the mouse embryo;
Developmental Biology; Vol. 470; 84-94; PMCID PMC8219371; 10.1016/j.ydbio.2020.11.005
- Metcalfe, Kyle S.; Murali, Ranjani; et el. (2021) Experimentally-validated
correlation analysis reveals new anaerobic methane oxidation
partnerships with consortium-level heterogeneity in diazotrophy;
ISME Journal; Vol. 15; No. 2; 377-396; PMCID PMC8027057; 10.1038/s41396-020-00757-1
- Niklasson, Camilla U.; Fredlund, Elina; et el. (2021) Hypoxia
inducible factor‐2α importance for migration, proliferation, and
self‐renewal of trunk neural crest cells; Developmental Dynamics;
Vol. 250; No. 2; 191-236; 10.1002/dvdy.253
- Nguyen, Lam T.; Oikonomou, Catherine M.; et el. (2021) Simulations
of Proposed Mechanisms of FtsZ-Driven Cell Constriction; Journal of
Bacteriology; Vol. 203; No. 3; Art. No. e00576-20; PMCID PMC7886793; 10.1128/JB.00576-20
- Hartmann, Felix J.; Mrdjen, Dunja; et el. (2021) Single-cell
metabolic profiling of human cytotoxic T cells; Nature
Biotechnology; Vol. 39; No. 2; 186-197; 10.1038/s41587-020-0651-8
- Saif-ur-Rehman, Muhammad; Ali, Omair; et el. (2021) SpikeDeep-classifier:
a deep-learning based fully automatic offline spike sorting
algorithm; Journal of Neural Engineering; Vol. 18; No. 1; Art.
No. 016009; 10.1088/1741-2552/abc8d4
- Nicolas, William J.; Ghosal, Debnath; et el. (2021) Structure
of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton
by Electron Cryotomography; Journal of Bacteriology; Vol. 203;
No. 3; Art. No. e00371-20; PMCID PMC7811197; 10.1128/JB.00371-20
- Booeshaghi, A. Sina and Pachter, Lior (2021) Benchmarking
of lightweight-mapping based single-cell RNA-seq pre-processing; 10.1101/2021.01.25.428188
- Shin, Boyoung; Hosokawa, Hiroyuki; et el. (2021) Runx1
and Runx3 drive progenitor to T-lineage transcriptome conversion in
mouse T cell commitment via dynamic genomic site switching;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 118; No. 4; Art. No. e2019655118; PMCID PMC7848575; 10.1073/pnas.2019655118
- Gorin, Gennady and Pachter, Lior (2021) Direct
simulation of a stochastically driven multi-step birth-death
process; 10.1101/2021.01.20.427480
- Adashev, Vladimir E.; Kotov, Alexei A.; et el. (2021) Stellate
Genes and the piRNA Pathway in Speciation and Reproductive Isolation of
Drosophila melanogaster; Frontiers in Genetics; Vol. 11; Art.
No. 610665; PMCID PMC7874207; 10.3389/fgene.2020.610665
- Chiu, Hui; Hoopfer, Eric D.; et el. (2021) A
circuit logic for sexually shared and dimorphic aggressive behaviors in
Drosophila; Cell; Vol. 184; No. 2; 507-520; PMCID PMC7856078; 10.1016/j.cell.2020.11.048
- Chen, Yuxiao; Rosolia, Ugo; et el. (2021) Reactive
motion planning with probabilistic safety guarantees; 10.48550/arXiv.2011.03590
- Cai, Karena X.; Phan-Minh, Tung; et el. (2021) Rules
of the Road: Towards Safety and Liveness Guarantees for Autonomous
Vehicles; 10.48550/arXiv.2011.14148
- Keleş, Ümit; Lin, Chujun; et el. (2021) Efficient
prediction of trait judgments from faces using deep neural networks;
10.31234/osf.io/t7hw4
- Morrison, Muir; Razo-Mejia, Manuel; et el. (2021) Reconciling
kinetic and thermodynamic models of bacterial transcription; PLOS
Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID
PMC7845990; 10.1371/journal.pcbi.1008572
- Weberling, Antonia and Zernicka-Goetz, Magdalena (2021) Trophectoderm
mechanics direct epiblast shape upon embryo implantation; Cell
Reports; Vol. 34; No. 3; Art. No. 108655; PMCID PMC7816124; 10.1016/j.celrep.2020.108655
- Irizarry, Jihyun; McGehee, James; et el. (2021) High
levels of Dorsal transcription factor downregulate, not promote, snail
expression by regulating enhancer action; 10.1101/2021.01.11.426256
- Wang, Ruohan; Mishra, Prashant; et el. (2021) Identification
of new OPA1 cleavage site reveals that short isoforms regulate
mitochondrial fusion; Molecular Biology of the Cell; Vol. 32; No. 2;
157-168; PMCID PMC8120690; 10.1091/mbc.e20-09-0605
- Wong, Wan-Rong; Maher, Shayda; et el. (2021) Conserved
missense variant in ALDH1A3 ortholog impairs fecundity in C.
elegans; microPublication Biology; Art. No. 000357; 10.17912/micropub.biology.000357
- Karigo, Tomomi; Kennedy, Ann; et el. (2021) Distinct
hypothalamic control of same- and opposite-sex mounting behaviour in
mice; Nature; Vol. 589; No. 7841; 258-263; 10.1038/s41586-020-2995-0
- Sim, Min Sub; Skennerton, Connor T.; et el. (2021) Physiological,
genomic, and sulfur isotopic characterization of methanol metabolism by
Desulfovibrio carbinolicus; PLoS ONE; Vol. 16; No. 1; Art.
No. e0245069; 10.1371/journal.pone.0245069
- Olariu, Victor; Yui, Mary A.; et el. (2021) Multi-scale
Dynamical Modeling of T Cell Development from an Early Thymic Progenitor
State to Lineage Commitment; Cell Reports; Vol. 34; No. 2; Art.
No. 108622; PMCID PMC7943435; 10.1016/j.celrep.2020.108622
- Yu, Timothy C.; Liu, Winnie L.; et el. (2021) Multiplexed
characterization of rationally designed promoter architectures
deconstructs combinatorial logic for IPTG-inducible systems; Nature
Communications; Vol. 12; Art. No. 325; PMCID PMC7804116; 10.1038/s41467-020-20094-3
- Shin, Chun-Shik; Meng, Shuxia; et el. (2021) LONP1
and mtHSP70 cooperate to promote mitochondrial protein folding;
Nature Communications; Vol. 12; Art. No. 265; PMCID PMC7801493; 10.1038/s41467-020-20597-z
- Carbon, Seth; Douglass, Eric; et el. (2021) Gene
Ontology resource: enriching a GOld mine; Nucleic Acids Research;
Vol. 49; No. D1; D325-D334; PMCID PMC7779012; 10.1093/nar/gkaa1113
- Qiao, Mu and Meister, Markus (2021) Factorized
linear discriminant analysis and its application in computational
biology; 10.48550/arXiv.2010.02171
- Kato, Mihoko; Kolotuev, Irina; et el. (2021) Extrasynaptic
acetylcholine signaling through a muscarinic receptor regulates cell
migration; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 118; No. 1; Art. No. e1904338118; PMCID
PMC7817160; 10.1073/pnas.1904338118
- Watkins-Dulaney, Ella; Straathof, Sabine; et el. (2021) Tryptophan
Synthase: Biocatalyst Extraordinaire; ChemBioChem; Vol. 22; No. 1;
5-16; PMCID PMC7935429; 10.1002/cbic.202000379
- Wang, Feng; Moen, Derek R.; et el. (2021) Enzyme
Replacement Therapy for Mucopolysaccharidosis IIID using Recombinant
Human α-N-Acetylglucosamine-6-Sulfatase in Neonatal Mice; Molecular
Pharmaceutics; Vol. 18; No. 1; 214-227; PMCID PMC8362844; 10.1021/acs.molpharmaceut.0c00831
- LaPelusa, Michael; Donoviel, Dorit; et el. (2021) Microbiome
for Mars: surveying microbiome connections to healthcare with
implications for long-duration human spaceflight, virtual workshop, July
13, 2020; Microbiome; Vol. 9; Art. No. 2; PMCID PMC7781430; 10.1186/s40168-020-00951-5
- Kato, Mitsuo; Abdollahi, Maryam; et el. (2021) miR-379
deletion ameliorates features of diabetic kidney disease by enhancing
adaptive mitophagy via FIS1; Communications Biology; Vol. 4; Art.
No. 30; PMCID PMC7782535; 10.1038/s42003-020-01516-w
- Bannon, Dylan; Moen, Erick; et el. (2021) DeepCell
Kiosk: scaling deep learning–enabled cellular image analysis with
Kubernetes; Nature Methods; Vol. 18; No. 1; 43-45; 10.1038/s41592-020-01023-0
- Mickol, Rebecca L.; Louyakis, Artemis S.; et el. (2021) Draft
Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum
mesophilum Strain ECR; Microbiology Resource Announcements; Vol. 10;
No. 1; Art. No. e01302-20; 10.1128/mra.01302-20
- Irizarry, Jihyun and Stathopoulos, Angelike (2021) Dynamic
patterning by morphogens illuminated by cis-regulatory studies;
Development; Vol. 148; No. 2; Art. No. dev196113; PMCID PMC7847269; 10.1242/dev.196113
- Hay, Bruce A.; Oberhofer, Georg; et el. (2021) Engineering
the Composition and Fate of Wild Populations with Gene Drive; Annual
Review of Entomology; Vol. 66; 407-434; 10.1146/annurev-ento-020117-043154
- Rothenberg, Ellen V. and Göttgens, Berthold (2021) How
haematopoiesis research became a fertile ground for regulatory network
biology as pioneered by Eric Davidson; Current Opinion in
Hematology; Vol. 28; No. 1; 1-10; PMCID PMC7755131; 10.1097/moh.0000000000000628
- Bárcena, Montserrat; Barnes, Christopher O.; et el. (2021) Structural
biology in the fight against COVID-19; Nature Structural &
Molecular Biology; Vol. 28; No. 1; 2-7; 10.1038/s41594-020-00544-8
- Kaplan, Mohammed; Nicolas, William J.; et el. (2020) In
Situ Imaging and Structure Determination of Biomolecular Complexes Using
Electron Cryo-Tomography; ISBN 978-1-0716-0965-1; cryoEM: Methods
and Protocols; Humana Press: New York, NY; 83-111; 10.1007/978-1-0716-0966-8_4
- Galstyan, Vahe; Husain, Kabir; et el. (2020) Proofreading
through spatial gradients; eLife; Vol. 9; Art. No. e60415; 10.7554/eLife.60415
- Unger, Elizabeth K.; Keller, Jacob P.; et el. (2020) Directed
Evolution of a Selective and Sensitive Serotonin Sensor via Machine
Learning; Cell; Vol. 183; No. 7; 1986-2002; PMCID PMC8025677; 10.1016/j.cell.2020.11.040
- Walton, Sophie J.; Clamons, Samuel E.; et el. (2020) Analysis
of Circuits for Dosage Control in Microbial Populations; 10.1101/2020.12.18.423556
- Lee, Daniel A.; Oikonomou, Grigorios; et el. (2020) Neuropeptide
VF neurons promote sleep via the serotonergic raphe; eLife; Vol. 9;
Art. No. e54491; PMCID PMC7748413; 10.7554/eLife.54491
- Lisitskaya, Lidia; Petushkov, Ivan; et el. (2020) Recognition
of double-stranded DNA by the Rhodobacter sphaeroides Argonaute
protein; Biochemical and Biophysical Research Communications; Vol.
533; No. 4; 1484-1489; 10.1016/j.bbrc.2020.10.051
- Parker, Joseph and Struhl, Gary (2020) Control
of Drosophila wing size by morphogen range and hormonal gating;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 50; 31935-31944; 10.1073/pnas.2018196117
- Zhu, Meng; Cornwall-Scoones, Jake; et el. (2020) Developmental
clock and mechanism of de novo polarization of the mouse embryo;
Science; Vol. 370; No. 6522; Art. No. eabd2703; PMCID PMC8210885; 10.1126/science.abd2703
- Winnett, Alexander; Cooper, Matthew M.; et el. (2020) SARS-CoV-2
Viral Load in Saliva Rises Gradually and to Moderate Levels in Some
Humans; PMCID PMC7743094; 10.1101/2020.12.09.20239467
- Jafari, Matiar; Aflalo, Tyson; et el. (2020) The
human primary somatosensory cortex encodes imagined movement in the
absence of sensory information; Communications Biology; Vol. 3;
No. 1; Art. No. 757; 10.1038/s42003-020-01484-1
- Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Principles
of Self-Organization of the Mammalian Embryo; Cell; Vol. 183; No. 6;
1467-1478; PMCID PMC8212876; 10.1016/j.cell.2020.11.003
- Booeshaghi, A. Sina; Lubock, Nathan B.; et el. (2020) Reliable
and accurate diagnostics from highly multiplexed sequencing assays;
Scientific Reports; Vol. 10; Art. No. 21759; PMCID PMC7730459; 10.1038/s41598-020-78942-7
- Zhang, Xianjun; Carter, Stephen D.; et el. (2020) Visualizing
insulin vesicle neighborhoods in β cells by cryo-electron
tomography; Science Advances; Vol. 6; No. 50; Art. No. eabc8258;
PMCID PMC7725471; 10.1126/sciadv.abc8258
- Vu, Tri T. M.; Mitchell, Dylan C.; et el. (2020) The
Arg/N-degron pathway targets transcription factors and regulates
specific genes; Proceedings of the National Academy of Sciences of
the United States of America; Vol. 117; No. 49; 31094-31104; PMCID
PMC7733807; 10.1073/pnas.2020124117
- Pandey, Ayush and Murray, Richard M. (2020) A
two-state ribosome and protein model can robustly capture the chemical
reaction dynamics of gene expression; 10.1101/2020.11.25.399287
- Zocchi, Dhruv; Ye, Emily S.; et el. (2020) Stimulus-selective
lateral signaling between olfactory afferents enables parallel encoding
of distinct CO₂ dynamics; 10.1101/2020.12.03.410571
- Linsky, Thomas W.; Vergara, Renan; et el. (2020) De
novo design of potent and resilient hACE2 decoys to neutralize
SARS-CoV-2; Science; Vol. 370; No. 6521; 1208-1214; PMCID
PMC7920261; 10.1126/science.abe0075
- Pool, Allan-Hermann; Wang, Tongtong; et el. (2020) The
cellular basis of distinct thirst modalities; Nature; Vol. 588;
No. 7836; 112-117; PMCID PMC7718410; 10.1038/s41586-020-2821-8
- Allman, John (2020) Charlie
and Joyce at the Intersection of Science and Art; Progress in
Neurobiology; Vol. 195; Art. No. 101922; 10.1016/j.pneurobio.2020.101922
- Tsao, Doris Y. (2020) Does
finding a face cell tell us anything much at all?; Progress in
Neurobiology; Vol. 195; Art. No. 101925; 10.1016/j.pneurobio.2020.101925
- Garcez, Aguinaldo S.; Kaplan, Mohammed; et el. (2020) Effects
of antimicrobial photodynamic therapy on antibiotic-resistant
Escherichia coli; Photodiagnosis and Photodynamic Therapy; Vol. 32;
Art. No. 102029; PMCID PMC7744317; 10.1016/j.pdpdt.2020.102029
- Akella, Prithvi; Ahmadi, Mohamadreza; et el. (2020) Formal
Test Synthesis for Safety-Critical Autonomous Systems based on Control
Barrier Functions; ISBN 9781728174471; 2020 59th IEEE Conference on
Decision and Control (CDC); IEEE: Piscataway, NJ; 790-795; 10.1109/CDC42340.2020.9303776
- Needham, Brittany D.; Kaddurah-Daouk, Rima; et el. (2020) Gut
microbial molecules in behavioural and neurodegenerative conditions;
Nature Reviews Neuroscience; Vol. 21; No. 12; 717-731; 10.1038/s41583-020-00381-0
- Hung, Shao-Min; Wu, Daw-An; et el. (2020) Implicit
response incompatibility slowed down asymptomatic individuals with
Alzheimer’s disease pathology; Alzheimer’s & Dementia; Vol. 16;
No. S4, pt 1; Art. No. e044884; 10.1002/alz.044884
- Bernstein, Jeremy; Zhao, Jiawei; et el. (2020) Learning
compositional functions via multiplicative weight updates; 10.48550/arXiv.2006.14560
- Huang, Yujia; Gornet, James; et el. (2020) Neural
Networks with Recurrent Generative Feedback; 10.48550/arXiv.2007.09200
- Karman, Zoltan; Rethi-Nagy, Zsuzsanna; et el. (2020) Novel
perspectives of target-binding by the evolutionarily conserved PP4
phosphatase; Open Biology; Vol. 10; No. 12; Art. No. 200343; PMCID
PMC7776573; 10.1098/rsob.200343
- Cabeen, Ryan P.; Glass, Laura; et el. (2020) The
connections of the insular VEN area in great apes: A
histologically-guided ex vivo diffusion tractography study; Progress
in Neurobiology; Vol. 195; Art. No. 101941; PMCID PMC7806049; 10.1016/j.pneurobio.2020.101941
- Hesse, Janis K. and Tsao, Doris Y. (2020) The
macaque face patch system: a turtle’s underbelly for the brain;
Nature Reviews. Neuroscience; Vol. 21; No. 12; 695-716; 10.1038/s41583-020-00393-w
- Cai, L. (2020) Transcriptome-Scale
Super-Resolved Imaging in Tissues by RNA SeqFISH; European Journal
of Human Genetics; Vol. 28; No. S1; 10; 10.1038/s41431-020-00740-6
- Svensson, Valentine; da Veiga Beltrame, Eduardo; et el. (2020) A
curated database reveals trends in single cell transcriptomics;
Database: The Journal of Biological Databases and Curation; Vol. 2020;
Art. No. baaa073; PMCID PMC7698659; 10.1093/database/baaa073
- Kuzmenko, Anton; Oguienko, Anastasiya; et el. (2020) DNA
targeting and interference by a bacterial Argonaute nuclease;
Nature; Vol. 587; No. 7835; 632-637; 10.1038/s41586-020-2605-1
- Pluchinsky, Adam J.; Wackelin, Daniel J.; et el. (2020) High
Throughput Screening with SAMDI Mass Spectrometry for Directed
Evolution; Journal of the American Chemical Society; Vol. 142;
No. 47; 19804-19808; 10.1021/jacs.0c07828
- Banerjee, Abhik K.; Blanco, Mario R.; et el. (2020) SARS-CoV-2
disrupts splicing, translation, and protein trafficking to suppress host
defenses; Cell; Vol. 183; No. 5; 1325-1339; PMCID PMC7543886; 10.1016/j.cell.2020.10.004
- Dobreva, Tatyana; Brown, David; et el. (2020) Single
cell profiling of capillary blood enables out of clinic human immunity
studies; Scientific Reports; Vol. 10; Art. No. 20540; PMCID
PMC7688970; 10.1038/s41598-020-77073-3
- Tsypin, Lev M. and Newman, Dianne K. (2020) Bidirectional
redox cycling of phenazine-1-carboxylic acid by Citrobacter
portucalensis MBL drives increased nitrate reduction; 10.1101/2020.11.23.395335
- Carter, Stephen D.; Mamede, João I.; et el. (2020) Correlated
cryogenic fluorescence microscopy and electron cryo-tomography shows
that exogenous TRIM5α can form hexagonal lattices or autophagy
aggregates in vivo; Proceedings of the National Academy of Sciences
of the United States of America; Vol. 117; No. 47; 29702-29711; PMCID
PMC7703684; 10.1073/pnas.1920323117
- Flynn, Michael J.; Snitser, Olga; et el. (2020) A
simple direct RT-LAMP SARS-CoV-2 saliva diagnostic; 10.1101/2020.11.19.20234948
- Arango-Gonzalez, Blanca; Sen, Merve; et el. (2020) Inhibition
of VCP preserves retinal structure and function in autosomal dominant
retinal degeneration; 10.1101/2020.11.17.384669
- Markaki, Yolanda; Chong, Johnny Gan; et el. (2020) Xist-seeded
nucleation sites form local concentration gradients of silencing
proteins to inactivate the X-chromosome; 10.1101/2020.11.22.393546
- Barlow, Ida L.; Mackay, Eirinn; et el. (2020) A
genetic screen identifies dreammist as a regulator of sleep; 10.1101/2020.11.18.388736
- Adachi, Yoshihiro; Kato, Takashi; et el. (2020) Drp1
Tubulates the ER in a GTPase-Independent Manner; Molecular Cell;
Vol. 80; No. 4; 621-632; PMCID PMC7680448; 10.1016/j.molcel.2020.10.013
- Mullin, Sean W.; Wanger, Greg; et el. (2020) Patterns
of in situ Mineral Colonization by Microorganisms in a ~60°C Deep
Continental Subsurface Aquifer; Frontiers in Microbiology; Vol. 11;
Art. No. 536535; PMCID PMC7711152; 10.3389/fmicb.2020.536535
- Holman, Elizabeth A.; Fang, Yuan-Sheng; et el. (2020) Autonomous
adaptive data acquisition for scanning hyperspectral imaging;
Communications Biology; Vol. 3; No. 1; Art. No. 684; 10.1038/s42003-020-01385-3
- Chen, Sisi; Rivaud, Paul; et el. (2020) Dissecting
heterogeneous cell populations across drug and disease conditions with
PopAlign; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 46; 28784-28794; PMCID
PMC7682438; 10.1073/pnas.2005990117
- Hesse, Janis Karan and Tsao, Doris Y. (2020) A
new no-report paradigm reveals that face cells encode both consciously
perceived and suppressed stimuli; eLife; Vol. 9; Art. No. e58360;
PMCID PMC7676863; 10.7554/elife.58360
- Merk, Liana N.; Shur, Andrey S.; et el. (2020) Engineering
Logical Inflammation Sensing Circuit for Modulating Gut Conditions;
10.1101/2020.11.10.377085
- Bowren, Mark, Jr.; Adolphs, Ralph; et el. (2020) Multivariate
Lesion-Behavior Mapping of General Cognitive Ability and Its
Psychometric Constituents; Journal of Neuroscience; Vol. 40; No. 46;
8924-8937; PMCID PMC7659456; 10.1523/jneurosci.1415-20.2020
- Luo, Yicheng; Fefelova, Elena; et el. (2020) Repression
of interrupted and intact rDNA by the SUMO pathway in Drosophila
melanogaster; eLife; Vol. 2020; No. 9; Art. No. e52416; PMCID
PMC7676866; 10.7554/eLife.52416
- Rix, Gordon; Watkins-Dulaney, Ella J.; et el. (2020) Scalable
continuous evolution for the generation of diverse enzyme variants
encompassing promiscuous activities; Nature Communications; Vol. 11;
Art. No. 5644; PMCID PMC7648111; 10.1038/s41467-020-19539-6
- Mehrab, Zakaria; Mobin, Jaiaid; et el. (2020) A
faster implementation of association mapping from k-mers;
Bio-protocol; Vol. 10; No. 21; Art. No. e3815; 10.21769/bioprotoc.3815
- Pandya-Jones, Amy; Markaki, Yolanda; et el. (2020) A
protein assembly mediates Xist localization and gene silencing;
Nature; Vol. 587; No. 7832; 145-151; PMCID PMC7644664; 10.1038/s41586-020-2703-0
- Li, Yuwei; Gonzalez, Walter G.; et el. (2020) Macropinocytosis-mediated
membrane recycling drives neural crest migration by delivering F-actin
to the lamellipodium; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 44; 27400-27411;
PMCID PMC7959501; 10.1073/pnas.2007229117
- Stundl, Jan; Pospisilova, Anna; et el. (2020) Migratory
patterns and evolutionary plasticity of cranial neural crest cells in
ray-finned fishes; Developmental Biology; Vol. 467; No. 1-2; 14-29;
10.1016/j.ydbio.2020.08.007
- Fatalska, Agnieszka; Dzhindzhev, Nikola S.; et el. (2020) Interaction
interface in the C-terminal parts of centriole proteins Sas6 and
Ana2; Open Biology; Vol. 10; No. 11; Art. No. 200221; PMCID
PMC7729032; 10.1098/rsob.200221
- Dubois, Julien; Eberhardt, Frederick; et el. (2020) Personality
beyond taxonomy; Nature Human Behaviour; Vol. 4; No. 11; 1110-1117;
10.1038/s41562-020-00989-3
- Grant, Stephen and Lester, Henry A. (2020) Proteins
for increased surface expression of the α6β4 nicotinic acetylcholine
receptor: Nothing but good news?; Journal of Clinical Investigation;
Vol. 130; No. 11; 5685-5687; PMCID PMC7598034; 10.1172/jci143197
- Kennedy, Ann; Kunwar, Prabhat S.; et el. (2020) Stimulus-specific
hypothalamic encoding of a persistent defensive state; Nature; Vol.
586; No. 7831; 730-734; PMCID PMC7606611; 10.1038/s41586-020-2728-4
- He, Yun; Shi, Junhui; et el. (2020) Label-free
imaging of lipid-rich biological tissues by mid-infrared photoacoustic
microscopy; Journal of Biomedical Optics; Vol. 25; No. 10; Art.
No. 106506; 10.1117/1.jbo.25.10.106506
- Aflalo, T.; Zhang, C. Y.; et el. (2020) A
shared neural substrate for action verbs and observed actions in human
posterior parietal cortex; Science Advances; Vol. 6; No. 43; Art.
No. eabb3984; 10.1126/sciadv.abb3984
- Wang, Zijun; Barnes, Christopher O.; et el. (2020) A
broadly neutralizing macaque monoclonal antibody against the HIV-1
V3-Glycan patch; eLife; Vol. 9; Art. No. e61991; PMCID PMC7577740;
10.7554/eLife.61991
- Piacentino, Michael L.; Hutchins, Erica J.; et el. (2020) Temporal
changes in plasma membrane lipid content induce endocytosis to regulate
developmental epithelial-to-mesenchymal transition; 10.1101/2020.10.18.344523
- Yamamoto, Masahiro and Shimojo, Shinsuke (2020) The
Brain Knows enough to take into account Light and Shadow; 10.1101/2020.10.19.344838
- Fornace, Mark E.; Porubsky, Nicholas J.; et el. (2020) A
Unified Dynamic Programming Framework for the Analysis of Interacting
Nucleic Acid Strands: Enhanced Models, Scalability, and Speed; ACS
Synthetic Biology; Vol. 9; No. 10; 2665-2678; 10.1021/acssynbio.9b00523
- Le, Henry H.; Wrobel, Chester J. J.; et el. (2020) Modular
metabolite assembly in Caenorhabditis elegans depends on
carboxylesterases and formation of lysosome-related organelles;
eLife; Vol. 2020; No. 9; Art. No. e61886; PMCID PMC7641594; 10.7554/eLife.61886
- Dunham, Noah P. and Arnold, Frances H. (2020) Nature’s
Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent
Oxygenases; ACS Catalysis; Vol. 10; No. 20; 12239-12255; PMCID
PMC7710332; 10.1021/acscatal.0c03606
- Hutchins, Erica J.; Gandhi, Shashank; et el. (2020) RNA-binding
protein Elavl1/HuR is required for maintenance of cranial neural crest
specification; 10.1101/2020.10.14.338715
- Vangala, Pranitha; Murphy, Rachel; et el. (2020) High-Resolution
Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen
Detection; Molecular Cell; Vol. 80; No. 2; 359-373; PMCID
PMC7572724; 10.1016/j.molcel.2020.09.005
- Badimon, Ana; Strasburger, Hayley J.; et el. (2020) Negative
feedback control of neuronal activity by microglia; Nature; Vol.
586; No. 7829; 417-423; 10.1038/s41586-020-2777-8
- Tang, Weiyi and Bronner, Marianne E. (2020) Neural
crest lineage analysis: from past to future trajectory; Development;
Vol. 147; No. 20; Art. No. dev193193; PMCID PMC7595686; 10.1242/dev.193193
- Moreaux, Laurent C.; Yatsenko, Dimitri; et el. (2020) Integrated
Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit
Activity —at Depth and in Real Time; Neuron; Vol. 108; No. 1; 66-92;
PMCID PMC8061790; 10.1016/j.neuron.2020.09.043
- Stagkourakis, Stefanos; Spigolon, Giada; et el. (2020) Experience-dependent
plasticity in an innate social behavior is mediated by hypothalamic
LTP; Proceedings of the National Academy of Sciences of the United
States of America; Vol. 117; No. 41; 25789-25799; PMCID PMC7568289; 10.1073/pnas.2011782117
- Weaver, Sara J.; Ortega, Davi R.; et el. (2020) CryoEM
structure of the type IVa pilus secretin required for natural competence
in Vibrio cholerae; Nature Communications; Vol. 11; Art. No. 5080;
PMCID PMC7545093; 10.1038/s41467-020-18866-y
- Treuner-Lange, Anke; Chang, Yi-Wei; et el. (2020) PilY1
and minor pilins form a complex priming the type IVa pilus in Myxococcus
xanthus; Nature Communications; Vol. 11; Art. No. 5054; PMCID
PMC7541494; 10.1038/s41467-020-18803-z
- Dahlstrom, Kurt M.; McRose, Darcy L.; et el. (2020) Keystone
metabolites of crop rhizosphere microbiomes; Current Biology; Vol.
30; No. 19; R1131-R1137; PMCID PMC8059773; 10.1016/j.cub.2020.08.005
- Romero-Wolf, Maile; Shin, Boyoung; et el. (2020) Notch2
complements Notch1 to mediate inductive signaling that initiates early T
cell development; Journal of Cell Biology; Vol. 219; No. 10; Art.
No. e202005093; PMCID PMC7659720; 10.1083/jcb.202005093
- Yatsenko, Dimitri; Moreaux, Laurent C.; et el. (2020) Signal
separability in integrated neurophotonics; 10.1101/2020.09.27.315556
- Piacentino, Michael L.; Li, Yuwei; et el. (2020) Epithelial-to-mesenchymal
transition and different migration strategies as viewed from the neural
crest; Current Opinion in Cell Biology; Vol. 66; 43-50; 10.1016/j.ceb.2020.05.001
- Lynch, Cian J.; Bernad, Raquel; et el. (2020) Global
hyperactivation of enhancers stabilizes human and mouse naive
pluripotency through inhibition of CDK8/19 Mediator kinases; Nature
Cell Biology; Vol. 22; No. 10; 1223-1238; 10.1038/s41556-020-0573-1
- Sun, Simo; Shinya, Ryoji; et el. (2020) Telomere-to-Telomere
Genome Assembly of Bursaphelenchus okinawaensis Strain SH1;
Microbiology Resource Announcements; Vol. 9; No. 43; Art. No. e01000-20;
PMCID PMC7585841; 10.1128/mra.01000-20
- Gorin, Gennady and Pachter, Lior (2020) Intrinsic
and extrinsic noise are distinguishable in a synthesis – export –
degradation model of mRNA production; 10.1101/2020.09.25.312868
- Court, Robert; Namiki, Shigehiro; et el. (2020) A
Systematic Nomenclature for the Drosophila Ventral Nerve Cord;
Neuron; Vol. 107; No. 6; 1071-1079; PMCID PMC7611823; 10.1016/j.neuron.2020.08.005
- Gandhi, Shashank; Hutchins, Erica J.; et el. (2020) Bimodal
function of chromatin remodeler Hmga1 in neural crest induction and
Wnt-dependent emigration; eLife; Vol. 2020; No. 9; Art. No. e57779;
PMCID PMC7591248; 10.7554/elife.57779
- Kumagai, Akiko and Dunphy, William G. (2020) Binding
of the Treslin-MTBP Complex to Specific Regions of the Human Genome
Promotes the Initiation of DNA Replication; Cell Reports; Vol. 32;
No. 12; Art. No. 108178; PMCID PMC7523632; 10.1016/j.celrep.2020.108178
- Ireland, William T.; Beeler, Suzannah M.; et el. (2020) Deciphering
the regulatory genome of Escherichia coli, one hundred promoters at a
time; eLife; Vol. 2020; No. 9; Art. No. e55308; PMCID PMC7567609; 10.7554/eLife.55308
- Parker, Joseph and Rabeling, Christian (2020) Evolution:
Shape-Shifting Social Parasites; Current Biology; Vol. 30; No. 18;
R1049-R1051; 10.1016/j.cub.2020.07.010
- Hutchins, Erica J. and Bronner, Marianne E. (2020) A
Spectrum of Cell States During the Epithelial-to-Mesenchymal
Transition; ISBN 978-1-0716-0778-7; The Epithelial-to Mesenchymal
Transition: Methods and Protocols; Humana Press: New York, NY; 3-6; 10.1007/978-1-0716-0779-4_1
- Abbott, Larry F.; Bock, Davi D.; et el. (2020) The
Mind of a Mouse; Cell; Vol. 182; No. 6; 1372-1376; 10.1016/j.cell.2020.08.010
- Dar, Daniel; Thomashow, Linda S.; et el. (2020) Global
landscape of phenazine biosynthesis and biodegradation reveals
species-specific colonization patterns in agricultural soils and crop
microbiomes; eLife; Vol. 2020; No. 9; Art. No. e59726; 10.7554/eLife.59726
- Yun, Kyongsik; Bhattacharya, Joydeep; et el. (2020) Causally
Linking Neural Dominance to Perceptual Dominance in a Multisensory
Conflict; Neuroreport; Vol. 31; No. 13; 991-998; 10.1097/WNR.0000000000001505
- Barnes, Christopher O.; Jette, Claudia A.; et el. (2020) Structural
classification of neutralizing antibodies against the SARS-CoV-2 spike
receptor-binding domain suggests vaccine and therapeutic strategies;
10.1101/2020.08.30.273920
- Li, Ya-tang; Turan, Zeynep; et el. (2020) Functional
Architecture of Motion Direction in the Mouse Superior Colliculus;
Current Biology; Vol. 30; No. 17; 3304-3315; PMCID PMC8221388; 10.1016/j.cub.2020.06.023
- Panda, Pallavi; Kovacs, Levente; et el. (2020) Tissue
specific requirement of Drosophila Rcd4 for centriole duplication and
ciliogenesis; Journal of Cell Biology; Vol. 219; No. 8; Art.
No. e201912154; PMCID PMC7401805; 10.1083/jcb.201912154
- Wang, Xun and Rothenberg, Ellen V. (2020) Illuminating
the core of adaptive immunity—how the regulatory genome controls Rag
chromatin dynamics; Science Immunology; Vol. 5; No. 51; Art.
No. eabd6427; 10.1126/sciimmunol.abd6427
- Han, Han; Geng, Yuan; et el. (2020) Overlapping
and Distinct Roles of HAM Family Genes in Arabidopsis Shoot
Meristems; Frontiers in Plant Science; Vol. 11; Art. No. 541968;
PMCID PMC7498855; 10.3389/fpls.2020.541968
- Wang, Xiao-Jing; Hu, Hailan; et el. (2020) Computational
neuroscience: a frontier of the 21st century; National Science
Review; Vol. 7; No. 9; 1418-1422; 10.1093/nsr/nwaa129
- Bähr, Susanne; Brinkmann-Chen, Sabine; et el. (2020) Selective
Enzymatic Oxidation of Silanes to Silanols; Angewandte Chemie
International Edition; Vol. 59; No. 36; 15507-15511; PMCID PMC7511438;
10.1002/anie.202002861
- Cornwall-Scoones, Jake and Zernicka-Goetz, Magdalena (2020) Starting
life in space; National Science Review; Vol. 7; No. 9; 1447-1448; 10.1093/nsr/nwaa102
- Cornelius, Ryan J.; Sharma, Avika; et el. (2020) A novel
distal convoluted tubule-specific Cre-recombinase driven by the NaCl
cotransporter gene; American Journal of Physiology-Renal Physiology;
Vol. 319; No. 3; F423-F435; PMCID PMC7509282; 10.1152/ajprenal.00101.2020
- Baetica, Ania-Ariadna; Leong, Yoke Peng; et el. (2020) Guidelines
for designing the antithetic feedback motif; Physical Biology; Vol.
17; No. 5; Art. No. 055002; 10.1088/1478-3975/ab8454
- Ninova, Maria and Fejes Tóth, Katalin (2020) New
players on the piRNA field; Nature Structural & Molecular
Biology; Vol. 27; No. 9; 771-779; 10.1038/s41594-020-0484-7
- Baiocchi, Tiffany; Anesko, Kyle; et el. (2020) Signaling
by AWC Olfactory Neurons Is Necessary for Caenorhabditis elegans’
Response to Prenol, an Odor Associated with Nematode-Infected
Insects; Genetics; Vol. 216; No. 1; 145-157; PMCID PMC7463287; 10.1534/genetics.120.303280
- Cabeen, Ryan P.; Allman, John M.; et el. (2020) THC
Exposure is Reflected in the Microstructure of the Cerebral Cortex and
Amygdala of Young Adults; Cerebral Cortex; Vol. 30; No. 9;
4949-4963; PMCID PMC7947183; 10.1093/cercor/bhaa087
- Le, Henry H.; Wrobel, Chester J.; et el. (2020) Modular
metabolite assembly in C. elegans lysosome-related organelles; 10.1101/2020.08.22.262956
- Booeshaghi, A. Sina; Tan, Fayth; et el. (2020) Markedly
heterogeneous COVID-19 testing plans among US colleges and
universities; 10.1101/2020.08.09.20171223
- Wu, Zachary; Yang, Kevin K.; et el. (2020) Signal
Peptides Generated by Attention-Based Neural Networks; ACS Synthetic
Biology; Vol. 9; No. 8; 2154-2161; 10.1021/acssynbio.0c00219
- Wojtowicz, Woj M.; Vielmetter, Jost; et el. (2020) A
Human IgSF Cell-Surface Interactome Reveals a Complex Network of
Protein-Protein Interactions; Cell; Vol. 182; No. 4; 1027-1043;
PMCID PMC7440162; 10.1016/j.cell.2020.07.025
- Robbiani, Davide F.; Gaebler, Christian; et el. (2020) Convergent
Antibody Responses to SARS-CoV-2 Infection in Convalescent
Individuals; Nature; Vol. 584; No. 7821; 437-442; PMCID PMC7263513;
10.1038/s41586-020-2456-9
- Saunders, Scott H.; Tse, Edmund C. M.; et el. (2020) Extracellular
DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in
Pseudomonas aeruginosa Biofilms; Cell; Vol. 182; No. 4; 919-932;
PMCID PMC7457544; 10.1016/j.cell.2020.07.006
- Barnes, Christopher O.; West, Anthony P., Jr.; et el. (2020) Structures
of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and
Recurrent Features of Antibodies; Cell; Vol. 182; No. 4; 828-842;
PMCID PMC7311918; 10.1016/j.cell.2020.06.025
- Stepanik, Vincent; Sun, Jingjing; et el. (2020) FGF
Pyramus Has a Transmembrane Domain and Cell-Autonomous Function in
Polarity; Current Biology; Vol. 30; No. 16; 3141-3153; PMCID
PMC7748623; 10.1016/j.cub.2020.06.006
- Khazaei, Tahmineh; Williams, Rory L.; et el. (2020) Metabolic
multistability and hysteresis in a model aerobe-anaerobe microbiome
community; Science Advances; Vol. 6; No. 33; Art. No. eaba0353;
PMCID PMC7423363; 10.1126/sciadv.aba0353
- Shahbazi, Marta N.; Wang, Tianren; et el. (2020) Developmental
potential of aneuploid human embryos cultured beyond implantation;
Nature Communications; Vol. 11; Art. No. 3987; PMCID PMC7418029; 10.1038/s41467-020-17764-7
- Gradinaru, Viviana (2020) Expanding
the brain researcher’s toolkit; Science; Vol. 369; No. 6504; 637; 10.1126/science.abd2660
- Tsypin, Lev M.; Saunders, Scott H.; et el. (2020) Draft
Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter
portucalensis Strain MBL; Microbiology Resource Announcements; Vol.
9; No. 32; Art. No. e00695-20; PMCID PMC7409854; 10.1128/mra.00695-20
- Thompson, W. H.; Nair, R.; et el. (2020) A
data resource from concurrent intracranial stimulation and functional
MRI of the human brain; Scientific Data; Vol. 7; Art. No. 258; PMCID
PMC7406507; 10.1038/s41597-020-00595-y
- Hoffmann, Magnus A. G.; Bar-On, Yotam; et el. (2020) Nanoparticles
presenting clusters of CD4 expose a universal vulnerability of HIV-1 by
mimicking target cells; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 31; 18719-18728;
PMCID PMC7414181; 10.1073/pnas.2010320117
- Vu, Tri T. M. and Varshavsky, Alexander (2020) The
ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron
Pathway; Biochemistry; Vol. 59; No. 30; 2796-2812; PMCID PMC7669821;
10.1021/acs.biochem.0c00514
- Zhang, Yandong; Sohn, Changho; et el. (2020) Detecting
protein and post-translational modifications in single cells with
iDentification and qUantification sEparaTion (DUET); Communications
Biology; Vol. 3; Art. No. 420; 10.1038/s42003-020-01132-8
- Hutchins, Erica J.; Piacentino, Michael L.; et el. (2020) P-bodies
are sites of rapid RNA decay during the neural crest
epithelial-mesenchymal transition; 10.1101/2020.07.31.231860
- Legouis, David; Ricksten, Sven-Erick; et el. (2020) Altered
proximal tubular cell glucose metabolism during acute kidney injury is
associated with mortality; Nature Metabolism; Vol. 2; No. 8;
732-743; 10.1038/s42255-020-0238-1
- Walton, Sophie J.; Wang, Han; et el. (2020) Caenorhabditis
elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene
Expression; Genetics; Vol. 215; No. 4; 1039-1054; PMCID PMC7404228;
10.1534/genetics.120.302923
- Dubois, Julien; Oya, Hiroyuki; et el. (2020) Causal
Mapping of Emotion Networks in the Human Brain: Framework and Initial
Findings; Neuropsychologia; Vol. 145; Art. No. 106571; PMCID
PMC5949245; 10.1016/j.neuropsychologia.2017.11.015
- Liu, Lu; Zhang, Yue; et el. (2020) Characterization
of the dimeric CMG/pre-initiation complex and its transition into DNA
replication forks; Cellular and Molecular Life Sciences; Vol. 77;
No. 15; 3041-3058; PMCID PMC11104849; 10.1007/s00018-019-03333-9
- Weatherbee, Bailey A. T.; Glover, David M.; et el. (2020) Expression
of SARS-CoV-2 receptor ACE2 and the protease TMPRSS2 suggests
susceptibility of the human embryo in the first trimester; Open
Biology; Vol. 10; No. 8; 200162; PMCID PMC7479935; 10.1098/rsob.200162
- Razo-Mejia, Manuel; Marzen, Sarah; et el. (2020) First-principles
prediction of the information processing capacity of a simple genetic
circuit; Physical Review E; Vol. 102; No. 2; Art. No. 022404; 10.1103/PhysRevE.102.022404
- Choi, Jaebin; Taal, Adriaan J.; et el. (2020) Fully
Integrated Time-Gated 3D Fluorescence Imager for Deep Neural
Imaging; IEEE Transactions on Biomedical Circuits and Systems; Vol.
14; No. 4; 636-645; 10.1109/tbcas.2020.3008513
- Fincker, Maeva; Huber, Julie A.; et el. (2020) Metabolic
strategies of marine subseafloor Chloroflexi inferred from genome
reconstructions; Environmental Microbiology; Vol. 22; No. 8;
3188-3204; 10.1111/1462-2920.15061
- Gorin, Gennady and Pachter, Lior (2020) Special
function methods for bursty models of transcription; Physical Review
E; Vol. 102; No. 2; Art. No. 022409; 10.1103/physreve.102.022409
- Su, Yapeng; Li, Guideng; et el. (2020) Systems
biology for investigating drug resistance mechanism of melanoma;
Cancer Research; Vol. 80; No. 16; Art. No. 6585; 10.1158/1538-7445.am2020-6585
- Partridge, E. Christopher; Chhetri, Surya B.; et el. (2020) Occupancy
maps of 208 chromatin-associated proteins in one human cell type;
Nature; Vol. 583; No. 7818; 720-728; 10.1038/s41586-020-2023-4
- He, Peng; Williams, Brian A.; et el. (2020) The
changing mouse embryo transcriptome at whole tissue and single-cell
resolution; Nature; Vol. 583; No. 7818; 760-767; 10.1038/s41586-020-2536-x
- Dobreva, Tatyana; Brown, David; et el. (2020) Enabling
out-of-clinic human immunity studies via single-cell profiling of
capillary blood; 10.1101/2020.07.25.210468
- Pleiner, Tino; Pinton Tomaleri, Giovani; et el. (2020) Structural
basis for membrane insertion by the human ER membrane protein
complex; Science; Vol. 369; No. 6502; 433-436; PMCID PMC7547852; 10.1126/science.abb5008
- Koromila, Theodora; Gao, Fan; et el. (2020) Odd-paired
is a pioneer-like factor that coordinates with Zelda to control gene
expression in embryos; eLife; Vol. 9; Art. No. e59610; PMCID
PMC7417190; 10.7554/eLife.59610
- Ladinsky, Mark S.; Gnanapragasam, Priyanthi N. P.; et el. (2020) Electron
tomography visualization of HIV-1 fusion with target cells using fusion
inhibitors to trap the pre-hairpin intermediate; eLife; Vol. 9; Art.
No. e58411; PMCID PMC7394545; 10.7554/eLife.58411
- Durand-Smet, Pauline; Spelman, Tamsin A.; et el. (2020) Cytoskeletal
organization in isolated plant cells under geometry control;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 29; 17399-17408; PMCID PMC7382239; 10.1073/pnas.2003184117
- Lim, Daniel C.; Joukov, Vladimir; et el. (2020) Redox
priming promotes Aurora A activation during mitosis; Science
Signaling; Vol. 13; No. 641; Art. No. eabb6707; PMCID PMC8514121; 10.1126/scisignal.abb6707
- Chen, Yu-Chuan; Navarrete, Marian S.; et el. (2020) N-myristoyltransferase-1
is necessary for lysosomal degradation and mTORC1 activation in cancer
cells; Scientific Reports; Vol. 10; Art. No. 11952; 10.1038/s41598-020-68615-w
- Patel, Abhilash; Murray, Richard M.; et el. (2020) Assessment
of Robustness to Temperature in a Negative Feedback Loop and a
Feedforward Loop; ACS Synthetic Biology; Vol. 9; No. 7; 1581-1590;
10.1021/acssynbio.0c00023
- Ordyan, Mariam; Bartol, Tom; et el. (2020) Interactions
between calmodulin and neurogranin govern the dynamics of CaMKII as a
leaky integrator; PLoS Computational Biology; Vol. 16; No. 7; Art.
No. e1008015; 10.1371/journal.pcbi.1008015
- Quintero-Cadena, Porfirio; Lenstra, Tineke L.; et el. (2020) RNA
Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional
Bursting; Molecular Cell; Vol. 79; No. 2; 207-220; 10.1016/j.molcel.2020.05.030
- Han, Yanting and Adolphs, Ralph (2020) Estimating
the heritability of psychological measures in the Human Connectome
Project dataset; PLoS ONE; Vol. 15; No. 7; Art. No. e0235860; PMCID
PMC7347217; 10.1371/journal.pone.0235860
- Hirokawa, Soichi; Chure, Griffin; et el. (2020) Sequence-Dependent
Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination;
Nucleic Acids Research; Vol. 48; No. 12; 6726-6739; PMCID PMC7337519; 10.1093/nar/gkaa418
- Wang, Juan; Nikonorova, Inna A.; et el. (2020) Release
and targeting of polycystin-2-carrying ciliary extracellular
vesicles; Current Biology; Vol. 30; No. 13; R755-R756; PMCID
PMC7668157; 10.1016/j.cub.2020.05.079
- Bao, Pinglei; She, Liang; et el. (2020) A
map of object space in primate inferotemporal cortex; Nature; Vol.
583; No. 7814; 103-108; PMCID PMC8088388; 10.1038/s41586-020-2350-5
- Wittmann, Bruce J.; Knight, Anders M.; et el. (2020) Diversity-Oriented
Enzymatic Synthesis of Cyclopropane Building Blocks; ACS Catalysis;
Vol. 10; No. 13; 7112-7116; PMCID PMC7709968; 10.1021/acscatal.0c01888
- Noor El-Nachef, Wael and Bronner, Marianne (2020) The
people behind the papers - Wael Noor El-Nachef and Marianne Bronner;
Development; Vol. 147; No. 13; Art. No. dev194001; 10.1242/dev.194001
- Irizarry, Jihyun; McGehee, James; et el. (2020) Twist-dependent
ratchet functioning downstream from Dorsal revealed using a
light-inducible degron; Genes and Development; Vol. 34; No. 13-14;
965-972; PMCID PMC7328519; 10.1101/gad.338194.120
- Sohn, Won J.; Wang, Po T.; et el. (2020) A
Prototype of a Fully-Implantable Charge-Balanced Artificial Sensory
Stimulator for Bi-directional Brain-Computer-Interface (BD-BCI);
ISBN 9781728119908; 2020 42nd Annual International Conference of the
IEEE Engineering in Medicine & Biology Society (EMBC); IEEE:
Piscataway, NJ; 3082-3085; 10.1109/embc44109.2020.9176718
- El-Nachef, Wael Noor and Bronner, Marianne E. (2020) De
novo enteric neurogenesis in post-embryonic zebrafish from Schwann cell
precursors rather than resident cell types; Development; Vol. 147;
No. 13; Art. No. dev186619; PMCID PMC7375481; 10.1242/dev.186619
- Ramaker, Ryne C.; Hardigan, Andrew A.; et el. (2020) Dissecting
the regulatory activity and sequence content of loci with exceptional
numbers of transcription factor associations; Genome Research; Vol.
30; No. 7; 939-950; PMCID PMC7397867; 10.1101/gr.260463.119
- Paradiso, Sergio; Brown, Warren S.; et el. (2020) Integration
Between Cerebral Hemispheres Contributes to Defense Mechanisms;
Frontiers in Psychology; Vol. 11; Art. No. 1534; PMCID PMC7359856; 10.3389/fpsyg.2020.01534
- Doeser, Ludvig; Nilsson, Petter; et el. (2020) Invariant
Sets for Integrators and Quadrotor Obstacle Avoidance; ISBN
9781538682661; 2020 American Control Conference (ACC); IEEE: Piscataway,
NJ; 3814-3821; 10.23919/acc45564.2020.9147872
- Baldini, Francesca; Anandkumar, Animashree; et el. (2020) Learning
Pose Estimation for UAV Autonomous Navigation and Landing Using
Visual-Inertial Sensor Data; ISBN 9781538682661; 2020 American
Control Conference (ACC); IEEE: Piscataway, NJ; 2961-2966; 10.23919/ACC45564.2020.9147400
- Varuzhanyan, Grigor and Chan, David C. (2020) Mitochondrial
dynamics during spermatogenesis; Journal of Cell Science; Vol. 133;
No. 14; Art. No. jcs235937; PMCID PMC7375475; 10.1242/jcs.235937
- Aravin, Alexei A. (2020) Pachytene
piRNAs as beneficial regulators or a defense system gone rogue;
Nature Genetics; Vol. 52; No. 7; 644-645; 10.1038/s41588-020-0656-8
- Ahmadi, Mohamadreza; Ono, Masahiro; et el. (2020) Risk-Averse
Planning Under Uncertainty; ISBN 9781538682661; 2020 American
Control Conference (ACC); IEEE: Piscataway, NJ; 3305-3312; 10.23919/ACC45564.2020.9147792
- Serrano-Amenos, Claudia; Hu, Frank; et el. (2020) Thermal
Analysis of a Skull Implant in Brain-Computer Interfaces; ISBN
9781728119908; 2020 42nd Annual International Conference of the IEEE
Engineering in Medicine & Biology Society (EMBC); IEEE: Piscataway,
NJ; 3066-3069; 10.1109/embc44109.2020.9175483
- Flytzanis, Nicholas C.; Goeden, Nick; et el. (2020) Broad
gene expression throughout the mouse and marmoset brain after
intravenous delivery of engineered AAV capsids; 10.1101/2020.06.16.152975
- Minxha, Juri; Adolphs, Ralph; et el. (2020) Flexible
recruitment of memory-based choice representations by human
medial-frontal cortex; Science; Vol. 368; No. 6498; Art.
No. eaba3313; PMCID PMC7531893; 10.1126/science.aba3313
- Shehata, Mohammad; Cheng, Miao; et el. (2020) Team
flow is a unique brain state associated with enhanced information
integration and neural synchrony; 10.1101/2020.06.17.157990
- Dong, Cheng; Chen, Shun-Jia; et el. (2020) Recognition
of nonproline N-terminal residues by the Pro/N-degron pathway;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 117; No. 25; 14158-14167; PMCID PMC7322002; 10.1073/pnas.2007085117
- Houghton, J. L.; Jones, C.; et el. (2020) Resolving
micron-scale heterogeneity in porewater δ³⁴S_(H₂S) by combining films
for in-situ sulfide capture and secondary ion mass spectrometry;
Marine Chemistry; Vol. 223; Art. No. 103810; 10.1016/j.marchem.2020.103810
- Kishore, Ranjana; Arnaboldi, Valerio; et el. (2020) Automated
generation of gene summaries at the Alliance of Genome Resources;
Database : The Journal of Biological Databases and Curation; Vol. 2020;
Art. No. baaa037; PMCID PMC7304461; 10.1093/database/baaa037
- Singla, Shruti; Iwamoto-Stohl, Lisa K.; et el. (2020) Autophagy-mediated
apoptosis eliminates aneuploid cells in a mouse model of chromosome
mosaicism; Nature Communications; Vol. 11; Art. No. 2958; PMCID
PMC7290028; 10.1038/s41467-020-16796-3
- Kyprianou, Christos; Christodoulou, Neophytos; et el. (2020) Basement
membrane remodelling regulates mouse embryogenesis; Nature; Vol.
582; No. 7811; 253-258; PMCID PMC7308173; 10.1038/s41586-020-2264-2
- Jia, Zhi-Jun; Gao, Shilong; et el. (2020) Enzymatic
Primary Amination of Benzylic and Allylic C(sp³)–H Bonds; Journal of
the American Chemical Society; Vol. 142; No. 23; 10279-10283; 10.1021/jacs.0c03428
- McCaffrey, Erin F.; Donato, Michele; et el. (2020) Multiplexed
imaging of human tuberculosis granulomas uncovers immunoregulatory
features conserved across tissue and blood; 10.1101/2020.06.08.140426
- Bai, Xiaofei; Bouffard, Jeff; et el. (2020) Caenorhabditis
elegans PIEZO Channel Coordinates Multiple Reproductive Tissues to
Govern Ovulation; eLife; Vol. 9; Art. No. e53603; 10.7554/eLife.53603
- Mao, Shunfu; Pachter, Lior; et el. (2020) RefShannon:
A genome-guided transcriptome assembler using sparse flow
decomposition; PLoS ONE; Vol. 15; No. 6; Art. No. e0232946; PMCID
PMC7266320; 10.1371/journal.pone.0232946
- Rutledge, Elisabeth A. and McMahon, Andrew P. (2020) Mutational
analysis of genes with ureteric progenitor cell‐specific expression in
branching morphogenesis of the mouse kidney; Developmental Dynamics;
Vol. 249; No. 6; 765-774; 10.1002/dvdy.157
- Ding, Fangyuan and Elowitz, Michael B. (2020) Quantitative
single-cell splicing analysis reveals an ‘economy of scale’ filter for
gene expression; 10.1101/457432
- Polonsky, Michal; Round, Krista; et el. (2020) Analysis
of luminal breast cancer tumor microenvironment using seqFISH;
Cancer Epidemiology, Biomarkers and Prevention; Vol. 29; No. 6; Art.
No. B117; 10.1158/1538-7755.disp18-b117
- Sun, Jingjing; Macabenta, Frank; et el. (2020) Collective
Migrations of Drosophila Embryonic Trunk and Caudal Mesoderm-Derived
Muscle Precursor Cells; Genetics; Vol. 215; No. 2; 297-322; PMCID
PMC7268997; 10.1534/genetics.120.303258
- Chuk, Tim; Chan, Antoni B.; et el. (2020) Eye
movement analysis with switching hidden Markov models; Behavior
Research Methods; Vol. 52; No. 3; 1026-1043; PMCID PMC8613150; 10.3758/s13428-019-01298-y
- Yang, Jing; Antin, Parker; et el. (2020) Guidelines
and definitions for research on epithelial–mesenchymal transition;
Nature Reviews. Molecular Cell Biology; Vol. 21; No. 6; 341-352; 10.1038/s41580-020-0237-9
- Svensson, Valentine; Gayoso, Adam; et el. (2020) Interpretable
factor models of single-cell RNA-seq via variational autoencoders;
Bioinformatics; Vol. 36; No. 11; 3418-3421; PMCID PMC7267837; 10.1093/bioinformatics/btaa169
- Ciemniecki, John A. and Newman, Dianne K. (2020) The
potential for redox-active metabolites (RAMs) to enhance or unlock
anaerobic survival metabolisms in aerobes; Journal of Bacteriology;
Vol. 202; No. 11; Art. No. e00797-19; PMCID PMC7221258; 10.1128/jb.00797-19
- Strehle, Mackenzie and Guttman, Mitchell (2020) Xist
drives spatial compartmentalization of DNA and protein to orchestrate
initiation and maintenance of X inactivation; Current Opinion in
Cell Biology; Vol. 64; 139-147; 10.1016/j.ceb.2020.04.009
- Gao, Xiaojing J.; Chong, Lucy S.; et el. (2020) Engineering
multiple levels of specificity in an RNA viral vector
- Liu, Yang; Perona, Pietro; et el. (2020) PanDA:
Panoptic Data Augmentation; 10.48550/arXiv.1911.12317
- Cohen, Bruce N.; Nichols, Aaron L.; et el. (2020) Successful
Cessation Programs that Reduce Comorbidity May Explain Surprisingly Low
Smoking Rates Among Hospitalized COVID-19 Patients; 10.32388/WURFH0
- Cho, Jaehyoung; Gao, Sibyl; et el. (2020) Vennter
– An interactive analysis tool for WormBase interaction data using Venn
diagrams; microPublication Biology; micropub.biology.000258; PMCID
PMC7251783; 10.17912/micropub.biology.000258
- Barlow, Jacob T.; Bogatyrev, Said R.; et el. (2020) A
Quantitative Sequencing Framework for Absolute Abundance Measurements of
Mucosal and Lumenal Microbial Communities; Nature Communications;
Vol. 11; Art. No. 2590; PMCID PMC7244552; 10.1038/s41467-020-16224-6
- Jue, Erik and Ismagilov, Rustem F. (2020) Commercial
stocks of SARS-CoV-2 RNA may report low concentration values, leading to
artificially increased apparent sensitivity of diagnostic assays; 10.1101/2020.04.28.20077602
- Oh, Jang-Hyun; Hyun, Ju-Yeon; et el. (2020) Five
enzymes of the Arg/N-degron pathway form a targeting complex: The
concept of superchanneling; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 20; 10778-10788;
PMCID PMC7245096; 10.1073/pnas.2003043117
- Gallego-Hernandez, A. L.; DePas, W. H.; et el. (2020) Upregulation
of virulence genes promotes Vibrio cholerae biofilm
hyperinfectivity; Proceedings of the National Academy of Sciences of
the United States of America; Vol. 117; No. 20; 11010-11017; PMCID
PMC7245069; 10.1073/pnas.1916571117
- Zhou, Andrew Z.; Chen, Kai; et el. (2020) Enzymatic
Lactone-Carbene C‒H Insertion to Build Contiguous Chiral Centers;
ACS Catalysis; Vol. 10; No. 10; 5393-5398; 10.1021/acscatal.0c01349
- Gorasia, Dhana G.; Chreifi, Georges; et el. (2020) In
situ structure and organisation of the type IX secretion system; 10.1101/2020.05.13.094771
- Campos, Tulio L.; Korhonen, Pasi K.; et el. (2020) Predicting
gene essentiality in Caenorhabditis elegans by feature engineering and
machine-learning; Computational and Structural Biotechnology
Journal; Vol. 18; 1093-1102; 10.1016/j.csbj.2020.05.008
- Schwarzkopf, Maayan; Choi, Harry M. T.; et el. (2020) Multiplexed
Quantitative In Situ Hybridization for Mammalian Cells on a Slide: qHCR
and dHCR Imaging (v3.0); ISBN 978-1-0716-0622-3; In Situ
Hybridization Protocols; Humana Press: New York, NY; 143-156; 10.1007/978-1-0716-0623-0_9
- Schwarzkopf, Maayan; Choi, Harry M. T.; et el. (2020) Multiplexed
Quantitative In Situ Hybridization for Mammalian or Bacterial Cells in
Suspension: qHCR Flow Cytometry (v3.0); ISBN 978-1-0716-0622-3; In
Situ Hybridization Protocols; Humana Press: New York, NY; 127-141; 10.1007/978-1-0716-0623-0_8
- Choi, Harry M. T.; Schwarzkopf, Maayan; et el. (2020) Multiplexed
Quantitative In Situ Hybridization with Subcellular or Single-Molecule
Resolution Within Whole-Mount Vertebrate Embryos: qHCR and dHCR Imaging
(v3.0); ISBN 978-1-0716-0622-3; In Situ Hybridization Protocols;
Humana Press: New York, NY; 159-178; 10.1007/978-1-0716-0623-0_10
- Su, Yapeng; Ko, Melissa E.; et el. (2020) Multi-omic
single-cell snapshots reveal multiple independent trajectories to drug
tolerance in a melanoma cell line; Nature Communications; Vol. 11;
Art. No. 2345; PMCID PMC7214418; 10.1038/s41467-020-15956-9
- Zhang, Ting; Hay, Bruce A.; et el. (2020) Generation,
Analyzing and in-vivo Drug Treatment of Drosophila Models with
IBMPFD; Bio-protocol; Vol. 10; No. 10; Art. No. e3621; PMCID
PMC7842768; 10.21769/bioprotoc.3621
- Laxhuber, Kathrin S.; Morrison, Muir J.; et el. (2020) Theoretical
investigation of a genetic switch for metabolic adaptation; PLoS
ONE; Vol. 15; No. 5; Art. No. e0226453; PMCID PMC7205307; 10.1371/journal.pone.0226453
- Bassi, Ivan; Luzzani, Francesca; et el. (2020) Prokineticin
receptor 2 affects GnRH3 neuron ontogeny but not fertility in
zebrafish; Scientific Reports; Vol. 10; Art. No. 7632; PMCID
PMC7229164; 10.1038/s41598-020-64077-2
- Esswein, Shannon R.; Gristick, Harry B.; et el. (2020) Structural
basis for Zika envelope domain III recognition by a germline version of
a recurrent neutralizing antibody; Proceedings of the National
Academy of Sciences of the United States of America; Vol. 117; No. 18;
9865-9875; PMCID PMC7211955; 10.1073/pnas.1919269117
- Ly, Sarah; Lee, Daniel A.; et el. (2020) Evolutionarily
Conserved Regulation of Sleep by the Protein Translational Regulator
PERK; Current Biology; Vol. 30; No. 9; 1639-1648; PMCID PMC8788386;
10.1016/j.cub.2020.02.030
- Gandhi, Shashank; Ezin, Max; et el. (2020) Reprogramming
Axial Level Identity to Rescue Neural-Crest-Related Congenital Heart
Defects; Developmental Cell; Vol. 53; No. 3; 300-315; PMCID
PMC7255058; 10.1016/j.devcel.2020.04.005
- Spolski, Rosanne; Li, Peng; et el. (2020) Functional
dissection of the Il2ra superenhancer reveals developmentally regulated
and cell type specific elements; Journal of Immunology; Vol. 204;
No. S1; Art. No. 78.16
- Schattgen, Stefan A.; Crawford, Jeremy C.; et el. (2020) Intestinal
intraepithelial lymphocyte repertoires are imprinted clonal structures
selected for MHC reactivity; Journal of Immunology; Vol. 204;
No. S1; Art. No. 84.4
- Clamons, Samuel; Qian, Lulu; et el. (2020) Programming
and simulating chemical reaction networks on a surface; Journal of
the Royal Society Interface; Vol. 17; No. 166; Art. No. 20190790; PMCID
PMC7276541; 10.1098/rsif.2019.0790
- Yu, Ziqing; Lyu, Weiyuan; et el. (2020) Self-partitioning
SlipChip for slip-induced droplet formation and human papillomavirus
viral load quantification with digital LAMP; Biosensors and
Bioelectronics; Vol. 155; Art. No. 112107; 10.1016/j.bios.2020.112107
- Leu, Andy O.; McIlroy, Simon J.; et el. (2020) Lateral
Gene Transfer Drives Metabolic Flexibility in the Anaerobic
Methane-Oxidizing Archaeal Family Methanoperedenaceae; mBio; Vol.
11; No. 3; Art. No. e01325-20; PMCID PMC7327174; 10.1128/mBio.01325-20
- Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Multiplexed
Cre-dependent selection yields systemic AAVs for targeting distinct
brain cell types; Nature Methods; Vol. 17; No. 5; 541-550; PMCID
PMC7219404; 10.1038/s41592-020-0799-7
- Donaldson, Gregory P.; Chou, Wen-Chi; et el. (2020) Spatially
distinct physiology of Bacteroides fragilis within the proximal colon of
gnotobiotic mice; Nature Microbiology; Vol. 5; No. 5; 746-756; 10.1038/s41564-020-0683-3
- Kandul, Nikolay P.; Liu, Junru; et el. (2020) A
drug-inducible sex-separation technique for insects; Nature
Communications; Vol. 11; Art. No. 2106; PMCID PMC7193620; 10.1038/s41467-020-16020-2
- Seo, Jai Woong; Ingham, Elizabeth S.; et el. (2020) Positron
emission tomography imaging of novel AAV capsids maps rapid brain
accumulation; Nature Communications; Vol. 11; Art. No. 2102; PMCID
PMC7193641; 10.1038/s41467-020-15818-4
- Hung, Shao-Min; Wu, Daw-An; et el. (2020) Task-induced
attention load guides and gates unconscious semantic interference;
Nature Communications; Vol. 11; Art. No. 2088; PMCID PMC7190740; 10.1038/s41467-020-15439-x
- Brown, David; Altermatt, Michael; et el. (2020) A
Computational and Experimental Platform for Detecting Full Transcriptome
Cell Type Tropism of Lowly Expressed Barcoded and Pooled AAV Variants
via Single-Cell RNA Sequencing; Molecular Therapy; Vol. 28; No. 4;
80-81; 10.1016/j.ymthe.2020.04.019
- Mich, John K.; Gore, Bryan B.; et el. (2020) Building
a Toolbox of Compact Enhancers for Cell Type-Specific Gene Expression
from AAVs in the Primate Brain; Molecular Therapy; Vol. 28; No. 4;
70; 10.1016/j.ymthe.2020.04.019
- Padia, Umesh; Brown, David; et el. (2020) Cloud-based
Software for NGS Data Management and Analysis for Directed Evolution of
Peptide-Based Delivery Vectors; Molecular Therapy; Vol. 28; No. 4;
434-435; 10.1016/j.ymthe.2020.04.019
- Ravindra Kumar, Sripriya; Miles, Timothy F.; et el. (2020) Evolution
and Investigation of Engineered AAV Capsids Exhibiting Enhanced
Transduction of the Central Nervous System with or without Murine Strain
Specificity; Molecular Therapy; Vol. 28; No. 4; 11-12; 10.1016/j.ymthe.2020.04.019
- Altermatt, Michael; Brown, David; et el. (2020) In-Depth
Parallel Profiling of Tissue and Cell-Type Tropism of AAV Variants by
Single-Cell RNA Sequencing; Molecular Therapy; Vol. 28; No. 4;
399-400; 10.1016/j.ymthe.2020.04.019
- Jang, Min Jee; Coughlin, Gerard M.; et el. (2020) Method
for High-Throughput, In Situ Characterization of AAV Variant Pools in
Intact Tissue Using Ultrasensitive Sequential FISH; Molecular
Therapy; Vol. 28; No. 4; 78-79; 10.1016/j.ymthe.2020.04.019
- Hori, Acacia; Robinson, J. Elliott; et el. (2020) Recombinant
AAVs Target Custom Frataxin Therapeutic Cassettes to Tissues of
Pathophysiologic Relevance in Friedreich’s Ataxia; Molecular
Therapy; Vol. 28; No. 4; 86-87; 10.1016/j.ymthe.2020.04.019
- Ding, Xiaozhe and Gradinaru, Viviana (2020) Structure-Guided
Rational Design of Adeno-Associated Viral Capsids with Expanded
Sizes; Molecular Therapy; Vol. 28; No. 4; 226-227; 10.1016/j.ymthe.2020.04.019
- Chen, Xinhong; Ravindra Kumar, Sripriya; et el. (2020) Targeting
the Rodent Peripheral Nervous System Efficiently and with Greater
Specificity through Intravenous Delivery of AAV Capsids Evolved by
Multiplexed-CREATE; Molecular Therapy; Vol. 28; No. 4; 252-253; 10.1016/j.ymthe.2020.04.019
- Goertsen, David; Flytzanis, Nicholas C.; et el. (2020) Transduction
Profiles of Engineered Adeno-Associated Viral Capsids in Mouse and
Marmoset; Molecular Therapy; Vol. 28; No. 4; 269-270; 10.1016/j.ymthe.2020.04.019
- Li, Shirley; Kujawski, Maciej; et el. (2020) Use
of Click-Chemistry to Make Bivalent Antibodies for Redirection of T
Cells: Proof of Concept in an In Vitro HIV Model; Molecular Therapy;
Vol. 28; No. 4; 369; 10.1016/j.ymthe.2020.04.019
- Ortega, Davi R.; Yang, Wen; et el. (2020) Repurposing
a chemosensory macromolecular machine; Nature Communications; Vol.
11; Art. No. 2041; PMCID PMC7184735; 10.1038/s41467-020-15736-5
- Hesse, Janis K. and Tsao, Doris Y. (2020) Representation
of conscious percept without report in the macaque face patch
network; 10.1101/2020.04.22.047522
- Jaffari, Matiar; Aflalo, Tyson; et el. (2020) Neural
correlates of cognitive motor signals in primary somatosensory
cortex; 10.1101/2020.04.20.041269
- Kaplan, Mohammed; Sweredoski, Michael J.; et el. (2020) Bacterial
flagellar motor PL-ring disassembly subcomplexes are widespread and
ancient; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 16; 8941-8947; PMCID PMC7183148;
10.1073/pnas.1916935117
- Oberhofer, Georg; Ivy, Tobin; et el. (2020) Gene
drive and resilience through renewal with next generation Cleave and
Rescue selfish genetic elements; Proceedings of the National Academy
of Sciences of the United States of America; Vol. 117; No. 16;
9013-9021; PMCID PMC7183144; 10.1073/pnas.1921698117
- Wang, Feng; Li, Shan; et el. (2020) Allosteric
p97 inhibitors can overcome resistance to ATP-competitive p97 inhibitors
for potential anti-cancer therapy; ChemMedChem; Vol. 15; No. 8;
685-694; PMCID PMC9049325; 10.1002/cmdc.201900722
- Rolando, Justin C.; Jue, Erik; et el. (2020) Real-time
kinetics and high-resolution melt curves in single-molecule digital LAMP
to differentiate and study specific and non-specific amplification;
Nucleic Acids Research; Vol. 48; No. 7; Art. No. e42; PMCID PMC7144905;
10.1093/nar/gkaa099
- Faber, Katherine T.; Kornfield, Julia A.; et el. (2020) Freeze-cast
ceramic membrane for size based filtration
- Rauch, Jennifer N.; Luna, Gabriel; et el. (2020) LRP1
is a master regulator of tau uptake and spread; Nature; Vol. 580;
No. 7803; 381-385; 10.1038/s41586-020-2156-5
- Chen, Kai and Arnold, Frances H. (2020) Engineering
cytochrome P450s for enantioselective cyclopropenation of internal
alkynes; Journal of the American Chemical Society; Vol. 142; No. 15;
6891-6895; 10.1021/jacs.0c01313
- Lee, Kyu Hyung; Tran, Alvita; et el. (2020) The
sifting of visual information in the superior colliculus; eLife;
Vol. 9; Art. No. e50678; 10.7554/elife.50678
- Van Rompay, Koen K. A.; Coffey, Lark L.; et el. (2020) A
Combination of Two Human Monoclonal Antibodies Limits Fetal Damage by
Zika Virus in Macaques; Proceedings of the National Academy of
Sciences of the United States of America; Vol. 117; No. 14; 7981-7989;
PMCID PMC7149495; 10.1073/pnas.2000414117
- Booeshaghi, A. Sina and Pachter, Lior (2020) Decrease
in ACE2 mRNA expression in aged mouse lung; 10.1101/2020.04.02.021451
- Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Living
a Sweet Life: Glucose Instructs Cell Fate in the Mouse Embryo;
Developmental Cell; Vol. 53; No. 1; 1-2; 10.1016/j.devcel.2020.03.012
- Goffredi, Shana K.; Tilic, Ekin; et el. (2020) Methanotrophic
bacterial symbionts fuel dense populations of deep-sea feather duster
worms (Sabellida, Annelida) and extend the spatial influence of methane
seepage; Science Advances; Vol. 6; No. 14; Art. No. eaay8562; 10.1126/sciadv.aay8562
- Liao, Hsin-I; Kashino, Makio; et el. (2020) Transient
Pupil Constriction Reflects and Affects Facial Attractiveness; 10.1101/2020.04.02.021436
- Chen, Yuxiao; Dathathri, Sumanth; et el. (2020) Counter-example
Guided Learning of Bounds on Environment Behavior; 10.48550/arXiv.2001.07233
- Carter, Stephen D.; Hampton, Cheri M.; et el. (2020) Ribosome-associated
vesicles: A dynamic subcompartment of the endoplasmic reticulum in
secretory cells; Science Advances; Vol. 6; No. 14; Art.
No. eaay9572; PMCID PMC7112762; 10.1126/sciadv.aay9572
- Leu, Andy O.; Cai, Chen; et el. (2020) Anaerobic
methane oxidation coupled to manganese reduction by members of the
Methanoperedenaceae; ISME Journal; Vol. 14; No. 4; 1030-1041; PMCID
PMC7082337; 10.1038/s41396-020-0590-x
- Klaesson, Filip; Nilsson, Petter; et el. (2020) Intermittent
Connectivity for Exploration in Communication-Constrained Multi-Agent
Systems; 10.1109/ICCPS48487.2020.00031
- Guerrero Peña, Fidel A.; Marrero Fernandez, Pedro D.; et el. (2020)
J
Regularization Improves Imbalanced Multiclass Segmentation; ISBN
9781538693308; 2020 IEEE 17th International Symposium on Biomedical
Imaging (ISBI); IEEE: Piscataway, NJ; 948-952; 10.1109/isbi45749.2020.9098550
- Lin, Chujun; Keleş, Ümit; et el. (2020) No
strong evidence that social network index is associated with gray matter
volume from a data-driven investigation; Cortex; Vol. 125; 307-317;
PMCID PMC7774327; 10.1016/j.cortex.2020.01.021
- Pu, Haoran; Lim, Jeffrey; et el. (2020) Optimal
artifact suppression in simultaneous electrocorticography stimulation
and recording for bi-directional brain-computer interface
applications; Journal of Neural Engineering; Vol. 17; No. 2; Art.
No. 026038; 10.1088/1741-2552/ab82ac
- Yao, Shenqin; Yuan, Peng; et el. (2020) RecV
recombinase system for in vivo targeted optogenomic modifications of
single cells or cell populations; Nature Methods; Vol. 17; No. 4;
422-429; PMCID PMC7135964; 10.1038/s41592-020-0774-3
- Liu, Jing; Kumar, Sanjeev; et el. (2020) Renoprotective
and Immunomodulatory Effects of GDF15 following AKI Invoked by
Ischemia-Reperfusion Injury; Journal of the American Society of
Nephrology; Vol. 31; No. 4; 701-715; 10.1681/asn.2019090876
- Bar-On, Yinon M.; Flamholz, Avi; et el. (2020) SARS-CoV-2
(COVID-19) by the numbers; eLife; Vol. 9; Art. No. e57309; PMCID
PMC7224694; 10.7554/elife.57309
- Ren, Xinying and Murray, Richard M. (2020) Layered
Feedback Control Improves Robust Functionality across Heterogeneous Cell
Populations; 10.1101/2020.03.24.006528
- Schoepp, Nathan G.; Liaw, Eric J.; et el. (2020) Differential
DNA accessibility to polymerase enables 30-minute phenotypic β-lactam
antibiotic susceptibility testing of carbapenem-resistant
Enterobacteriaceae; PLoS Biology; Vol. 18; No. 3; Art. No. 3000652;
PMCID PMC7081982; 10.1371/journal.pbio.3000652
- Savela, Emily S.; Schoepp, Nathan G.; et el. (2020) Surfactant-enhanced
DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic
susceptibility testing of Neisseria gonorrhoeae; PLoS Biology; Vol.
18; No. 3; Art. No. 3000651; PMCID PMC7081974; 10.1371/journal.pbio.3000651
- Inglis, Alison J.; Page, Katharine R.; et el. (2020) Differential
modes of orphan subunit recognition for the WRB/CAML complex; Cell
Reports; Vol. 30; No. 11; 3691-3698; PMCID PMC7147533; 10.1016/j.celrep.2020.02.084
- Arnaboldi, Valerio; Raciti, Daniela; et el. (2020) Text
mining meets community curation: a newly designed curation platform to
improve author experience and participation at WormBase; Database :
The Journal of Biological Databases and Curation; Vol. 2020; Art.
No. baaa006; PMCID PMC7078066; 10.1093/database/baaa006
- Weaver, Sara J.; Sazinsky, Matthew H.; et el. (2020) CryoEM
structure of the Vibrio cholerae Type IV competence pilus secretin
PilQ; 10.1101/2020.03.03.975896
- Quinn, Robert A.; Melnik, Alexey V.; et el. (2020) Global
chemical effects of the microbiome include new bile-acid
conjugations; Nature; Vol. 579; No. 7797; 123-129; 10.1038/s41586-020-2047-9
- Flyak, Andrew I.; Ruiz, Stormy E.; et el. (2020) An
ultralong CDRH2 in HCV neutralizing antibody demonstrates structural
plasticity of antibodies against E2 glycoprotein; eLife; Vol. 9;
Art. No. e53169; PMCID PMC7064334; 10.7554/elife.53169
- Khazaei, Tahmineh; Williams, Rory L.; et el. (2020) Metabolic
multi-stability and hysteresis in a model aerobe-anaerobe microbiome
community; 10.1101/2020.02.28.968941
- Mehrotra, Pihu; Tseropoulos, Georgios; et el. (2020) Adult
tissue-derived neural crest‐like stem cells: Sources, regulatory
networks, and translational potential: Concise review; Stem Cells
Translational Medicine; Vol. 9; No. 3; 328-341; 10.1002/sctm.19-0173
- Wagner, J. M. and Parker, J. (2020) Chemical
Cues Underly an Interspecies Symbiosis by Triggering a Modular
Social-Behavioral Program; Integrative and Comparative Biology; Vol.
60; No. S1; E244; 10.1093/icb/icaa006
- Naragon, T. H.; Brückner, A. K.; et el. (2020) Cuticular
hydrocarbons and the integration of myrmecophile rove beetles into ant
colonies; Integrative and Comparative Biology; Vol. 60; No. S1;
E170; 10.1093/icb/icaa006
- Yousefelahiyeh, M.; Miller, D. R.; et el. (2020) Dalotia
coriaria as a genetic model system of animal symbiosis; Integrative
and Comparative Biology; Vol. 60; No. S1; E452; 10.1093/icb/icaa007
- El-Nachef, Wael and Bronner, Marianne (2020) De
novo neurogenesis in the post-embryonic zebrafish enteric nervous system
from Schwann cell precursors rather than resident cell types;
Neurogastroenterology and Motility; Vol. 32; No. S1; Art. No. 29; 10.1111/nmo.13817
- Yang, Yang and Arnold, Frances Hamilton (2020) Enantioselective
C-H amination via directed evolution of cytochrome P450 enzymes
- Chen, Kai and Arnold, Frances H. (2020) Engineering
new catalytic activities in enzymes; Nature Catalysis; Vol. 3;
No. 3; 203-213; 10.1038/s41929-019-0385-5
- Behbahani, A. H.; Rak, A. K.; et el. (2020) Flies
Remember Multiple Food Locations in the Absence of External Cues;
Integrative and Comparative Biology; Vol. 60; No. S1; E15; 10.1093/icb/icaa006
- Kitchen, S. A.; Bruckner, A.; et el. (2020) Genomic
insights into gland development of rove beetles; Integrative and
Comparative Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
- Challis, Collin; Hori, Acacia; et el. (2020) Gut-seeded
α-synuclein fibrils promote gut dysfunction and brain pathology
specifically in aged mice; Nature Neuroscience; Vol. 23; No. 3;
327-336; PMCID PMC7065967; 10.1038/s41593-020-0589-7
- Kishi, Y.; Bruckner, A.; et el. (2020) Hox-logic
of Rove Beetle Chemical Weaponry; Integrative and Comparative
Biology; Vol. 60; No. S1; E126; 10.1093/icb/icaa006
- Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Nonequilibrium
thermodynamics of erasure with superconducting flux logic; Physical
Review Research; Vol. 2; No. 1; Art. No. 013249; 10.1103/PhysRevResearch.2.013249
- Zhang, Carey Y.; Aflalo, Tyson; et el. (2020) Preservation
of partially mixed selectivity in human posterior parietal cortex across
changes in task context; eNeuro; Vol. 7; No. 2; Art.
No. 0222-19.2019; PMCID PMC7070450; 10.1523/eneuro.0222-19.2019
- Brueckner, A. and Parker, J. (2020) Single
Cell Assembly of a Chemical Key Innovation in a Rove Beetle;
Integrative and Comparative Biology; Vol. 60; No. S1; E25; 10.1093/icb/icaa006
- Beery, Sara; Liu, Yang; et el. (2020) Synthetic
Examples Improve Generalization for Rare Classes; ISBN
978-1-7281-6553-0; 2020 IEEE Winter Conference on Applications of
Computer Vision (WACV); IEEE: Piscataway, NJ; 852-862; 10.1109/WACV45572.2020.9093570
- Haas, Kalina T.; Wightman, Raymond; et el. (2020) Pectin
homogalacturonan nanofilament expansion drives morphogenesis in plant
epidermal cells; Science; Vol. 367; No. 6481; 1003-1007; PMCID
PMC7932746; 10.1126/science.aaz5103
- Goldberg, Nathaniel; Knight, Anders M.; et el. (2020) Nitrene
Transfer Catalyzed by a Non-Heme Iron Enzyme and Enhanced by Non-Native
Small-Molecule Cofactors; 10.26434/chemrxiv.10062044.v1
- Basta, David W.; Angeles-Albores, David; et el. (2020) Heat-shock
proteases promote survival of Pseudomonas aeruginosa during growth
arrest; Proceedings of the National Academy of Sciences of the
United States of America; Vol. 117; No. 8; 4358-4367; PMCID PMC7049150;
10.1073/pnas.1912082117
- Marken, John P.; Xiao, Fangzhou; et el. (2020) A
geometric and structural approach to the analysis and design of
biological circuit dynamics: a theory tailored for synthetic
biology; 10.1101/2020.02.18.953620
- Pandey, Ayush and Murray, Richard M. (2020) Model
Reduction Tools For Phenomenological Modeling of Input-Controlled
Biological Circuits; 10.1101/2020.02.15.950840
- Milham, Michael; Petkov, Christopher I.; et el. (2020) Accelerating
the Evolution of Nonhuman Primate Neuroimaging; Neuron; Vol. 105;
No. 4; 600-603; PMCID PMC7610430; 10.1016/j.neuron.2019.12.023
- Gorin, Gennady; Svensson, Valentine; et el. (2020) RNA
velocity and protein acceleration from single-cell multiomics
experiments; Genome Biology; Vol. 21; Art. No. 39; PMCID PMC7029606;
10.1186/s13059-020-1945-3
- Olina, Anna; Kuzmenko, Anton; et el. (2020) Genome-wide
DNA sampling by Ago nuclease from the cyanobacterium Synechococcus
elongatus; RNA Biology; Vol. 17; No. 5; 677-688; PMCID PMC7237159;
10.1080/15476286.2020.1724716
- Rutledge, Elisabeth A.; Lindström, Nils O.; et el. (2020) Genetic
manipulation of ureteric bud tip progenitors in the mammalian kidney
through an Adamts18 enhancer driven tet-on inducible system;
Developmental Biology; Vol. 458; No. 2; 164-176; 10.1016/j.ydbio.2019.11.007
- Farahani, Samira S.; Raman, Vasumathi; et el. (2020) Robust
Model Predictive Control for Signal Temporal Logic Synthesis
- Guo, Shaobin; Hori, Yutaka; et el. (2020) Systematic
Design and Implementation of a Novel Synthetic Fold-Change Detector
Biocircuit In Vivo
- Bogatyrev, Said R.; Rolando, Justin C.; et el. (2020) Self-reinoculation
with fecal flora changes microbiota density and composition leading to
an altered bile-acid profile in the mouse small intestine;
Microbiome; Vol. 8; Art. No. 19; PMCID PMC7017497; 10.1186/s40168-020-0785-4
- Sampson, Timothy R.; Challis, Collin; et el. (2020) A
gut bacterial amyloid promotes α-synuclein aggregation and motor
impairment in mice; eLife; Vol. 9; Art. No. e53111; PMCID
PMC7012599; 10.7554/elife.53111
- Borden, Philip M.; Shivange, Amol V.; et el. (2020) A
fast genetically encoded fluorescent sensor for faithful in vivo
acetylcholine detection in mice, fish, worms and flies; 10.1101/2020.02.07.939504
- Grant, Stephen; Muthusamy, Anand K.; et el. (2020) Antagonists
Pharmacologically Chaperone Opioid Receptors; Biophysical Journal;
Vol. 118; No. 3; 27a; 10.1016/j.bpj.2019.11.328
- Banks, Rachel; Lee, Heun Jin; et el. (2020) Bridging
Kinesin Properties with System-scale Characteristics of
Microtubule-Motor Assemblies; Biophysical Journal; Vol. 118; No. 3;
176a-177a; 10.1016/j.bpj.2019.11.1081
- Weaver, Sara J.; Sazinsky, Matthew H.; et el. (2020) CryoEM
Structure of the Vibrio cholerae Type IV Pilus Secretin PilQ;
Biophysical Journal; Vol. 118; No. 3; 12a; 10.1016/j.bpj.2019.11.247
- McCarty, Nicholas S.; Razo-Mejia, Manuel; et el. (2020) Genetic
Barcodes Enable Quantitative Mapping of Operator Mutants to Gene
Expression; Biophysical Journal; Vol. 118; No. 3; 611a; 10.1016/j.bpj.2019.11.3298
- Galstyan, Vahe; Husain, Kabir; et el. (2020) Kinetic
Proofreading using Substrate Gradients and Enzyme Diffusion;
Biophysical Journal; Vol. 118; No. 3; 573a-574a; 10.1016/j.bpj.2019.11.3118
- Salmon, Gabe and Phillips, Rob (2020) Modeling
Microbial Interactions across Nutritional Environments using Maximum
Entropy; Biophysical Journal; Vol. 118; No. 3; 347a; 10.1016/j.bpj.2019.11.2004
- Phillips, Rob (2020) Schrodinger’s
“What is Life” At 75: The Physical Aspects of the Living Cell
Revisited; Biophysical Journal; Vol. 118; No. 3; 2a; 10.1016/j.bpj.2019.11.204
- Metskas, Lauren Ann; Ho, Samuel; et el. (2020) The
Effect of Cryo Temperature on Commonly used Fluorophores;
Biophysical Journal; Vol. 118; No. 3; 150a-151a; 10.1016/j.bpj.2019.11.942
- Chure, Griffin and Phillips, Rob (2020) The
Molecular Biophysics of Adaptation; Biophysical Journal; Vol. 118;
No. 3; 545a; 10.1016/j.bpj.2019.11.2983
- Hsiao, Victoria; Cheng, Aileen; et el. (2020) Design
and application of stationary phase combinatorial promoters
- Meng, Xianglin; Baetica, Ania A.; et el. (2020) Finding
stationary solutions to the chemical master equation by gluing state
spaces at one or two states recursively
- Yeung, Enoch; Kim, Jongmin; et el. (2020) Global
Dynamical Structure Reconstruction from Reconstructed Dynamical
Structure Subnetworks: Applications to Biochemical Reaction
Networks
- Schommers, Philipp; Gruell, Henning; et el. (2020) Restriction
of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody;
Cell; Vol. 180; No. 3; 471-489; PMCID PMC7042716; 10.1016/j.cell.2020.01.010
- Ninova, Maria; Chen, Yung-Chia Ariel; et el. (2020) Su(var)2-10
and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin
Silencing; Molecular Cell; Vol. 77; No. 3; 556-570; PMCID
PMC7007863; 10.1016/j.molcel.2019.11.012
- Han, Duo; Mo, Yilin; et el. (2020) Synthesis
of Distributed Longitudinal Control Protocols for a Platoon of
Autonomous Vehicles
- Ninova, Maria; Godneeva, Baira; et el. (2020) The
SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression
via Establishing H3K9 Trimethylation and Negative Feedback
Regulation; Molecular Cell; Vol. 77; No. 3; 571-585; PMCID
PMC7007874; 10.1016/j.molcel.2019.09.033
- Jue, Erik; Witters, Daan; et el. (2020) Two-phase
wash to solve the ubiquitous contaminant-carryover problem in commercial
nucleic-acid extraction kits; Scientific Reports; Vol. 10; Art.
No. 1940; PMCID PMC7004994; 10.1038/s41598-020-58586-3
- Dathathri, Sumanth; Livingston, Scott C.; et el. (2020) Identifying
and exploiting tolerance to unexpected jumps in synthesized strategies
for GR(1) specifications
- Sen, Shaunak and Murray, Richard M. (2020) Quantitative
Performance Bounds in Biomolecular Circuits due to Temperature
Uncertainty
- Swaminathan, Anandh; Gomez, Marcella M.; et el. (2020) Stochastic
Gene Expression in Single Gene Oscillator Variants
- Chen, Shun-Jia; Melnykov, Artem; et el. (2020) Evolution
of Substrates and Components of the Pro/N-Degron Pathway;
Biochemistry; Vol. 59; No. 4; 582-593; PMCID PMC7286083; 10.1021/acs.biochem.9b00953
- Brückner, Adrian and Parker, Joseph (2020) Molecular
evolution of gland cell types and chemical interactions in animals;
Journal of Experimental Biology; Vol. 223; No. Suppl 1; Art. No. 223; 10.1242/jeb.211938
- Frankiw, Luke; Mann, Mati; et el. (2020) Alternative
Splicing Coupled with Transcript Degradation Modulates OAS1g Antiviral
Activity; RNA; Vol. 26; No. 2; 126-136; PMCID PMC6961538; 10.1261/rna.073825.119
- Zhu, Meng and Zernicka-Goetz, Magdalena (2020) Building
an apical domain in the early mouse embryo: Lessons, challenges and
perspectives; Current Opinion in Cell Biology; Vol. 62; 144-149; 10.1016/j.ceb.2019.11.005
- Bjorkman, Pamela J. (2020) Can
we use structural knowledge to design a protective vaccine against
HIV-1?; HLA; Vol. 95; No. 2; 95-103; 10.1111/tan.13759
- Dickinson, Michael H.; Vosshall, Leslie B.; et el. (2020) Genome
editing in non-model organisms opens new horizons for comparative
physiology; Journal of Experimental Biology; Vol. 223; No. Suppl 1;
1; 10.1242/jeb.221119
- Glover, David M. (2020) Open
Biology in a new decade; Open Biology; Vol. 10; No. 2; Art.
No. 200025; PMCID PMC7058933; 10.1098/rsob.200025
- Ueda, Hiroki R.; Ertürk, Ali; et el. (2020) Tissue
clearing and its applications in neuroscience; Nature Reviews.
Neuroscience; Vol. 21; No. 2; 61-79; PMCID PMC8121164; 10.1038/s41583-019-0250-1
- Singhal, Vipul and Murray, Richard M. (2020) Cell-Free
Extract Data Variability Reduction in the Presence of Structural
Non-Identifiability
- McCardell, Reed D.; Pandey, Ayush; et el. (2020) Control
of density and composition in an engineered two-member bacterial
community; 10.1101/632174
- Ma, Guangxu; Wang, Tao; et el. (2020) Elucidating
the molecular and developmental biology of parasitic nematodes: Moving
to a multiomics paradigm; ISBN 978-0-12-820750-5; Giardia and
Giardiasis, Part A; Academic Press: London; 175-229; 10.1016/bs.apar.2019.12.005
- Arichega, Nikos; Dathathri, Sumanth; et el. (2020) Fast
Automatic Verification of Large-Scale Systems with Lookup
Tables
- Filippidis, Ioannis and Murray, Richard M. (2020) Hiding
variables when decomposing specifications into GR(1) contracts
- Mayalu, Michaëlle N. and Murray, Richard M. (2020) Theoretical
Design of Paradoxical Signaling-Based Synthetic Population Control
Circuit in E. coli; 10.1101/2020.01.27.921734
- Mohlin, Sofie; Persson, Camilla U.; et el. (2020) Cancer-associated
HIF-2α impacts trunk neural crest stemness; 10.1101/2020.01.22.915199
- Bogatyrev, Said R. and Ismagilov, Rustem F. (2020) Quantitative
microbiome profiling in lumenal and tissue samples with broad coverage
and dynamic range via a single-step 16S rRNA gene DNA copy
quantification and amplicon barcoding; 10.1101/2020.01.22.914705
- Jung, Yonil; Kennedy, Ann; et el. (2020) Neurons
that Function within an Integrator to Promote a Persistent Behavioral
State in Drosophila; Neuron; Vol. 105; No. 2; 322-333; PMCID
PMC6981076; 10.1016/j.neuron.2019.10.028
- Murrow, Lyndsay M.; Weber, Robert J.; et el. (2020) Changes
in epithelial proportions and transcriptional state underlie major
premenopausal breast cancer risks; 10.1101/430611
- Einav, Tal; Yazdi, Shahrzad; et el. (2020) Harnessing
Avidity: Quantifying Entropic and Energetic Effects of Linker Length and
Rigidity Required for Multivalent Binding of Antibodies to HIV-1
Spikes; 10.1101/406454
- Su, Yu-Lin; Wang, Xiuli; et el. (2020) Myeloid
Cell-Targeted miR-146a Mimic Inhibits NF-kB-Driven Inflammation and
Leukemia Progression in Vivo; Blood; Vol. 135; No. 3; 167-180; PMCID
PMC6966933; 10.1182/blood.2019002045
- Mastro, Tara L.; Preza, Anthony; et el. (2020) A
sex difference in the response of the rodent postsynaptic density to
synGAP haploinsufficiency; eLife; Vol. 9; Art. No. e52656; PMCID
PMC6994236; 10.7554/elife.52656
- Watkins, Ella J.; Almhjell, Patrick J.; et el. (2020) Direct
enzymatic synthesis of a deep-blue fluorescent noncanonical amino acid
from azulene and serine; ChemBioChem; Vol. 21; No. 1-2; 80-83; PMCID
PMC6980211; 10.1002/cbic.201900497
- Saira, Olli-Pentti; Matheny, Matthew H.; et el. (2020) Modification
of electron-phonon coupling by micromachining and suspension;
Journal of Applied Physics; Vol. 127; No. 2; Art. No. 024307; 10.1063/1.5132948
- Quinn, Robert A.; Thron, Taren; et el. (2020) Chemical
Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile
Acids; 10.1101/654756
- Zheng, Li; Meng, Yuan; et el. (2020) Multiple
roles of DNA2 nuclease/helicase in DNA metabolism, genome stability and
human diseases; Nucleic Acids Research; Vol. 48; No. 1; 16-35; PMCID
PMC6943134; 10.1093/nar/gkz1101
- Augustine, Vineet; Lee, Sangjun; et el. (2020) Neural
Control and Modulation of Thirst, Sodium Appetite, and Hunger; Cell;
Vol. 180; No. 1; 25-32; PMCID PMC7406138; 10.1016/j.cell.2019.11.040
- Agapite, Julie; Albou, Laurent-Philippe; et el. (2020) Alliance
of Genome Resources Portal: unified model organism research
platform; Nucleic Acids Research; Vol. 48; No. D1; D650-D658; PMCID
PMC6943066; 10.1093/nar/gkz813
- Harris, Todd W.; Arnaboldi, Valerio; et el. (2020) WormBase:
a modern Model Organism Information Resource; Nucleic Acids
Research; Vol. 48; No. D1; D762-D767; PMCID PMC7145598; 10.1093/nar/gkz920
- Hosokawa, Hiroyuki; Romero-Wolf, Maile; et el. (2020) Cell
type–specific actions of Bcl11b in early T-lineage and group 2 innate
lymphoid cells; Journal of Experimental Medicine; Vol. 217; No. 1;
Art. No. e20190972; PMCID PMC7037248; 10.1084/jem.20190972
- Mulcahy, Matthew J.; Huard, Stephanie M.; et el. (2020) Brain
Region-Specific nAChR and Associated Protein Abundance Alterations
Following Chronic Nicotine and/or Menthol Exposure; Journal of
Proteome Research; Vol. 19; No. 1; 36-48; PMCID PMC7289315; 10.1021/acs.jproteome.9b00286
- Chen, Sisi; Park, Jong H.; et el. (2020) Designing
signaling environments to steer transcriptional diversity in neural
progenitor cell populations
- Przepiorski, Aneta; Sander, Veronika; et el. (2018) A Simple
Bioreactor-Based Method to Generate Kidney Organoids from Pluripotent
Stem Cells; Stem Cell Reports; Vol. 11; No. 2; 470-484; 10.1016/j.stemcr.2018.06.018
- Bergkessel, Megan; Basta, David W.; et el. (2016) The
physiology of growth arrest: uniting molecular and environmental
microbiology; Nature Reviews Microbiology; Vol. 14; No. 9; 549-562;
PMCID PMC10069271; 10.1038/nrmicro.2016.107
- Liu, Cambrian Y.; Xiao, Cheng; et el. (2012) Electrophysiological
characterization of Grueneberg ganglion olfactory neurons: spontaneous
firing, sodium conductance, and hyperpolarization-activated
currents; Journal of Neurophysiology; Vol. 108; No. 5; 1318-1334; 10.1152/jn.00907.2011
- Dickinson, Mary E.; Selleck, Mark A. J.; et el. (1995) Dorsalization
of the neural tube by the non-neural ectoderm; Development; Vol.
121; No. 7; 2099-2106
- Moore, Andrew; Allman, John; et el. (1991) A
VLSI Neural Network for Color Constancy; ISBN 1-55860-184-8;
Advances in Neural Information Processing Systems 3; Morgan Kaufmann:
San Mateo, CA; 370-376
- McMahon, Andrew P.; Flytzanis, Constantin N.; et el. (1985) Introduction
of Cloned DNA into Sea Urchin Egg Cytoplasm: Replication and Persistence
during Embryogenesis; Developmental Biology; Vol. 108; No. 2;
420-430; 10.1016/0012-1606(85)90045-4
- Flytzanis, Constantin N.; McMahon, Andrew P.; et el. (1985) Persistence
and Integration of Cloned DNA in Postembryonic Sea Urchins;
Developmental Biology; Vol. 108; No. 2; 431-442; 10.1016/0012-1606(85)90046-6
- McMahon, A. P.; Novak, T. J.; et el. (1984) Inducible
expression of a cloned heat shock fusion gene in sea urchin embryos;
Proceedings of the National Academy of Sciences of the United States of
America; Vol. 81; No. 23; 7490-7494; PMCID PMC392172
- McMahon, A.; Fosten, M.; et el. (1983) X-chromosome
inactivation mosaicism in the three germ layers and the germ line of the
mouse embryo; Journal of Embryology and Experimental Morphology;
Vol. 74; 207-220
