Antoshechkin, Igor

Combined from CaltechAUTHORS

• Edwards, Rhodri T.M. and Antoshechkin, Igor, el al. (2025) Transcriptome analysis of the winter tick (Dermacentor albipictus) reveals sex-specific expression patterns; 10.1101/2025.02.17.638687
• Schwarz, Erich M. and Baniya, Anil, el al. (2025) Genomes of the entomopathogenic nematode<i>Steinernema hermaphroditum</i>and its associated bacteria; 10.1101/2025.01.09.632278
• Gamez, Stephanie and Antoshechkin, Igor, el al. (2020) The Developmental Transcriptome of Aedes albopictus, a Major Worldwide Human Disease Vector; G3; Vol. 10; No. 3; 1051-1062; PMCID PMC7056973; 10.1534/g3.119.401006
• Buchman, Anna and Gamez, Stephanie, el al. (2020) Broad Dengue Neutralization in Mosquitoes Expressing an Engineered Antibody; PLoS Pathogens; Vol. 16; No. 1; Art. No. e1008103; PMCID PMC6964813; 10.1371/journal.ppat.1008103
• Matthews, Benjamin J. and Antoshechkin, Igor (2018) Improved reference genome of Aedes aegypti informs arbovirus vector control; Nature; Vol. 563; No. 7732; 501-507; PMCID PMC6421076; 10.1038/s41586-018-0692-z
• Xu, Alexander M. and Liu, Qianhe, el al. (2018) Integrated measurement of intracellular proteins and transcripts in single cells; Lab on a Chip; Vol. 18; No. 21; 3251-3262; PMCID PMC6752714; 10.1039/c8lc00639c
• Schwarz, Erich M. and Hu, Yan, el al. (2015) The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families; Nature Genetics; Vol. 47; No. 4; 416-422; PMCID PMC4617383; 10.1038/ng.3237
• Akbari, Omar S. and Chen, Chun-Hong, el al. (2014) Novel Synthetic Medea Selfish Genetic Elements Drive Population Replacement in Drosophila; a Theoretical Exploration of Medea-Dependent Population Suppression; ACS Synthetic Biology; Vol. 3; No. 12; 915-928; PMCID PMC3742681; 10.1021/sb300079h
• Yue, Feng and Kirilusha, Anthony, el al. (2014) A comparative encyclopedia of DNA elements in the mouse genome; Nature; Vol. 515; No. 7527; 355-364; PMCID PMC4266106; 10.1038/nature13992
• Simões-Costa, Marcos and Tan-Cabugao, Joanne, el al. (2014) Transcriptome analysis reveals novel players in the cranial neural crest gene regulatory network; Genome Research; Vol. 24; No. 2; 281-290; PMCID PMC3912418; 10.1101/gr.161182.113
• Maxwell, Colin S. and Kruesi, William S., el al. (2014) Pol II Docking and Pausing at Growth and Stress Genes in C. elegans; Cell Reports; Vol. 6; No. 3; 455-466; PMCID PMC4026043; 10.1016/j.celrep.2014.01.008
• Akbari, Omar and Marshall, John, el al. (2013) Engineering synthetic medea-based and threshold-dependent underdominance-based gene drive systems in mosquitos; Pathogens and Global Health; Vol. 107; No. 8; 442; 10.1179/2047772413Z.000000000160
• Chiu, Hui and Schwartz, Hillel T., el al. (2013) Transgene-Free Genome Editing in Caenorhabditis elegans Using CRISPR-Cas; Genetics; Vol. 195; No. 3; 1167-1171; PMCID PMC3813845; 10.1534/genetics.113.155879
• Akbari, Omar S. and Antoshechkin, Igor, el al. (2013) Transcriptome Profiling of Nasonia vitripennis Testis Reveals Novel Transcripts Expressed from the Selfish B Chromosome, Paternal Sex Ratio; G3; Vol. 3; No. 9; 1597-1605; PMCID PMC3755920; 10.1534/g3.113.007583
• Schwarz, Erich M. and Korhonen, Pasi K., el al. (2013) The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus; Genome Biology; Vol. 14; No. 8; Art. No. R89; PMCID PMC4053716; 10.1186/gb-2013-14-8-r89
• Ahuja, Preeti and Wanagat, Jonathan, el al. (2013) Divergent Mitochondrial Biogenesis Responses in Human Cardiomyopathy; Circulation; Vol. 127; No. 19; 1957-1967; PMCID PMC4236313; 10.1161/CIRCULATIONAHA.112.001219
• Srinivasan, Jagan and Dillman, Adler R., el al. (2013) The Draft Genome and Transcriptome of Panagrellus redivivus Are Shaped by the Harsh Demands of a Free-Living Lifestyle; Genetics; Vol. 193; No. 4; 1279-1295; PMCID PMC3606103; 10.1534/genetics.112.148809
• Chen, Shijia and Oikonomou, Grigorios, el al. (2013) A large-scale in vivo analysis reveals that TALENs are significantly more mutagenic than ZFNs generated using context-dependent assembly; Nucleic Acids Research; Vol. 41; No. 4; 2769-2778; PMCID PMC3575824; 10.1093/nar/gks1356
• Maxwell, Colin S. and Antoshechkin, Igor, el al. (2012) Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans; Genome Research; Vol. 22; No. 10; 1920-1929; PMCID PMC3460187; 10.1101/gr.133587.111
• Huang, W. and Pérez-García, P., el al. (2012) Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator; Science; Vol. 336; No. 6077; 75-79; 10.1126/science.1219075
• Schwartz, Hillel T. and Antoshechkin, Igor, el al. (2011) Applications of high-throughput sequencing to symbiotic nematodes of the genus Heterorhabditis; Symbiosis; Vol. 55; No. 3; 111-118; 10.1007/s13199-012-0151-9
• Budd, Martin E. and Antoshechkin, Igor A., el al. (2011) Inviability of a DNA2 deletion mutant is due to the DNA damage checkpoint; Cell Cycle; Vol. 10; No. 10; 1690-1698; PMCID PMC3127164; 10.4161/cc.10.10.15643
• Mortazavi, Ali and Schwarz, Erich M., el al. (2010) Scaffolding a Caenorhabditis nematode genome with RNA-seq; Genome Research; Vol. 20; No. 12; 1740-1747; PMCID PMC2990000; 10.1101/gr.111021.110
• Harris, Todd W. and Antoshechkin, Igor, el al. (2010) WormBase: a comprehensive resource for nematode research; Nucleic Acids Research; Vol. 38; No. D1; D463-D467; PMCID PMC2808986; 10.1093/nar/gkp952
• Rogers, Anthony and Antoshechkin, Igor, el al. (2008) WormBase 2007; Nucleic Acids Research; Vol. 36; No. Supple; D612-D617; PMCID PMC2238927; 10.1093/nar/gkm975
• Antoshechkin, Igor and Sternberg, Paul W. (2007) The versatile worm: genetic and genomic resources for Caenorhabditis elegans research; Nature Reviews. Genetics; Vol. 8; No. 7; 518-532; 10.1038/nrg2105
• Girard, Lisa R. and Fiedler, Tristan J., el al. (2007) WormBook: the online review of Caenorhabditis elegans biology; Nucleic Acids Research; Vol. 35; No. Databa; D472-D475; PMCID PMC1669767; 10.1093/nar/gkl894
• Bieri, Tamberlyn and Blasiar, Darin, el al. (2006) WormBase: new content and better access; Nucleic Acids Research; Vol. 35; No. Databa; D1-D5; PMCID PMC1669750; 10.1093/nar/gkl818
• Schwarz, Erich M. and Antoshechkin, Igor, el al. (2006) WormBase: better software, richer content; Nucleic Acids Research; Vol. 34; No. Databa; D475-D478; PMCID PMC1347424; 10.1093/nar/gkj061
• Chen, Nansheng and Harris, Todd W., el al. (2005) WormBase: a comprehensive data resource for Caenorhabditis biology and genomics; Nucleic Acids Research; Vol. 33; No. Databa; D383-D389; PMCID PMC540020; 10.1093/nar/gki066
• Harris, Todd W. and Chen, Nansheng, el al. (2004) WormBase: a multi-species resource for nematode biology and genomics; Nucleic Acids Research; Vol. 32; No. Databa; D411-D417; PMCID PMC308800; 10.1093/nar/gkh066
• Wang, Fang and Yoder, John, el al. (2003) Caenorhabditis elegans EVL-14/PDS-5 and SCC-3 Are Essential for Sister Chromatid Cohesion in Meiosis and Mitosis; Molecular And Cellular Biology; Vol. 23; No. 21; 7698-7707; PMCID PMC207601; 10.1128/MCB.23.21.7698-7707.2003