Arnold, Frances

Dataset from CaltechTHESIS committee

• Miao, Kun (2024) Stimulated Raman Scattering: a Biophysical Perspective for Imaging Cells and Tissues; 10.7907/ch88-9173
• Johnston, Kadina Elizabeth (2024) Acquiring Enzyme Sequence-Fitness Data at Scale Toward Predictive Methods for Enzyme Engineering; 10.7907/xjz4-k217
• Wackelin, Daniel Joseph (2024) New to Nature C–C Bond Forming Cyclases: Pushing the Boundaries of Ring Forming Reactions; 10.7907/26ag-8c56
• Gao, Shilong (2024) Engineering Heme Proteins for C(sp³)–H Primary Amination; 10.7907/gsmr-b827
• Tao, Yujia (2023) Synthetic Studies Toward the Total Synthesis of Enterocin; 10.7907/jdhq-sb66
• Sarai, Nicholas Singh (2023) Engineering Cytochrome P450BM3 for Oxidation and Silicon–Carbon Bond Cleavage of Volatile Methylsiloxanes; 10.7907/gn1j-fz77
• Huang, Shan (2023) DNA-Guided Genome Manipulation in Escherichia coli; 10.7907/3yab-jg50
• Almhjell, Patrick James (2023) Noncanonical Amino Acid Synthesis by Evolved Tryptophan Synthases; 10.7907/rcvq-dg51
• Zhang, Juner (2022) New-to-Nature Selective C-H Alkylation Using Engineered Carbene Transferases; 10.7907/4kv8-f830
• Goldberg, Nathaniel Wood (2022) Non-Native Chemistry of Metalloenzymes; 10.7907/6sec-zx89
• Brown, David (2022) Principles of Massively Parallel Sequencing for Engineering and Characterizing Gene Delivery; 10.7907/yqjm-6609
• Watkins-Dulaney, Ella Jenná (2022) Engineering the Tryptophan Synthase β-Subunit for Synthesis of Noncanonical Amino Acids; 10.7907/yekm-y267
• Wittmann, Bruce James (2022) Strategies and Tools for Machine Learning-Assisted Protein Engineering; 10.7907/azzt-0q97
• Knight, Anders Matthew (2021) Expanding the Scope of Metalloprotein Families and Substrate Classes in New-to-Nature Reactions; 10.7907/7qh5-5130
• Wang, Jingzhou (2021) CDRxAb: Antibody Small-Molecule Conjugates with Computationally Designed Target-Binding Synergy; 10.7907/p0kj-9d56
• Wu, Zachary (2021) Data-Driven Protein Engineering; 10.7907/nx3c-qb44
• Chen, Kai (2020) Expanding the Catalytic Repertoire of Hemeproteins as Carbene Transferases to Access Diverse Molecular Structures; 10.7907/9b3c-nr61
• Yang, Kevin Kaichuang (2019) Probabilistic Protein Engineering; 10.7907/ZR4M-K630
• Flytzanis, Nicholas C. (2019) From Single-Cell to Whole-Body: Developing a Molecular Neuroscience Toolkit; 10.7907/S28C-DJ17
• Zhang, Ruijie (2019) Engineering Heme Proteins for Olefin and Carbon−Hydrogen Bond Functionalization Reactions; 10.7907/2076-CX23
• Piraner, Dan Ilya (2019) Tunable Thermal Bioswitches as a Control Modality for Next Generation Therapeutics; 10.7907/DH10-6N61
• Lewis, Russell DeRieux (2019) Evolution and Characterization of Carbene Transferases for Cyclopropanation and Carbon–Silicon Bond Formation; 10.7907/RMEX-Q134
• Bedbrook, Claire Nicole (2018) Engineering Novel Rhodopsins for Neuroscience; 10.7907/7RA0-BC29
• Lieblich, Seth Aharon (2017) Non-Canonical Amino Acid Mutagenesis of Position B28 In Insulin with Proline Analogs; 10.7907/Z90Z71BD
• Liontas, Rachel (2017) Controlling Deformability in Metallic Glass Nanopillars and Nanolattices; 10.7907/Z9028PHX
• Babin, Brett Michael (2016) Bioorthogonal Noncanonical Amino Acid Tagging for Selective Analysis of the Pseudomonas aeruginosa Proteome; 10.7907/Z94X55S1
• Cahn, Jackson Kenai Blender (2016) Engineering, Predicting, and Understanding Nicotinamide Cofactor Specificity; 10.7907/Z9QV3JJ8
• Agbo, Peter Chukwudi Ifeanychukwu (2015) Development of Metalloenzyme Dioxygen Reduction Cathodes; 10.7907/Z9MK69TD
• Szablowski, Jerzy Olgierd (2015) Biological Activity of Pyrrole-Imidazole Polyamides in vivo; 10.7907/Z9Q23X6D
• Farwell, Christopher C. (2015) Engineering and Characterization of Cytochrome P450 Enzymes for Nitrogen-Atom Transfer Reactions; 10.7907/Z9765C71
• Wannier, Timothy Milton (2015) Computationally Guided Monomerization of Red Fluorescent Proteins of the Class Anthozoa; 10.7907/Z9571908
• Mahdavi, Alborz (2015) Synthetic Biology Tools for Targeted Incorporation of Non-Canonical Amino Acids into Cellular Proteins; 10.7907/Z9W66HS4
• Bagert, John David (2015) Quantitative, Time-Resolved Proteomic Analysis Using Bio-Orthogonal Non-Canonical Amino Acid Tagging; 10.7907/Z9QC01D9
• Trudeau, Devin Lee (2014) Engineering Enzyme Systems by Recombination; 10.7907/F8T8-3S80
• Sheng, Gloria J. (2014) Tunable Heparan Sulfate Glycomimetics for Modulating Chemokine Activity; 10.7907/JQ2Z-EN67
• Lee, Toni Marie (2014) Computationally-Guided Thermostabilization of the Primary Endoglucanase from Hypocrea jerorina for Cellulosic Biofuel Production; 10.7907/Z9S180G0
• Truong, Frank (2013) Expanding Protein Sequence Space through Incorporation of Non-Canonical Amino Acids; 10.7907/6CXB-2092
• Moore, Matthew Michaels (2013) Applications of Computational Protein Design to Red Fluorescent Proteins; 10.7907/6876-A570
• Smith, Matthew Alexander (2013) Non-Contiguous Protein Recombination; 10.7907/4B8E-ZH08
• Wu, Indira (2013) Engineering Thermostable Fungal Cellobiohydrolases; 10.7907/V80F-X625
• Coelho, Pedro de Souza Leão (2013) Olefin Cyclopropanation and Carbon-Hydrogen Amination via Carbene and Nitrene Transfers Catalyzed by Engineered Cytochrome P450 Enzymes; 10.7907/HSPH-AF89
• Kalbarczyk, Karolina Zbigniew (2013) Directed Evolution of Terpene Synthases for Non-Natural Substrates; 10.7907/N4T5-FP16
• Nisthal, Alex (2012) Accelerating the Interplay Between Theory and Experiment in Protein Design; 10.7907/Z9833Q2F
• Romero, Philip Anthony (2012) Statistical Models of the Protein Fitness Landscape: Applications to Protein Evolution and Engineering; 10.7907/7W9R-Y338
• Michener, Joshua Kieran (2012) Combining Rational and Evolutionary Approaches to Optimize Enzyme Activity in Saccharomyces cerevisiae; 10.7907/2KPP-DS46
• Komor, Russell Scott (2012) Recombinatorial and Predictive Methods to Increase Cellulase Thermostability and Structural Analysis of a Thermostable P450 ; 10.7907/A1ZX-3W42
• Van Deventer, James A. (2011) Biophysics and Protein Engineering with Noncanonical Amino Acids; 10.7907/VT2B-8B33
• Chen, Mike Ming Yu (2011) Directed Evolution of Cytochrome P450 for Small Alkane Hydroxylation; 10.7907/T154-RW89
• Romano, Christine Anne (2011) DNA-Mediated Charge Transfer Between [4Fe-4S] Cluster Glycosylases; 10.7907/63TC-FN74
• Carbone, Martina Nini (2010) Characterization of the Functional Diversity and Evolvability of Chimeric Enzymes Assembled by Structure-Guided SCHEMA Recombination; 10.7907/QE98-1921
• Allen, Benjamin Daniel (2009) Development and Validation of Optimization Methods for the Design of Protein Sequences and Combinatorial Libraries; 10.7907/SNJJ-0Q88
• Brenner, Sarah Katherine (2009) Engineering Synthetic Biofilm-Forming Microbial Consortia; 10.7907/PMZ3-4Z96
• Bayer, Travis Scott (2009) Synthetic Regulation and Genetic Control of an Ecological Strategy; 10.7907/3GDB-C409
• Hawkins, Kristy Michelle (2009) Metabolic Engineering of Saccharomyces cerevisiae for the Production of Bensylisoquinoline Alkaloids; 10.7907/BQF7-QZ35
• Vizcarra, Christina Luisa (2008) Development and Evaluation of Protein Design Methods for Functional Targets; 10.7907/G16E-JZ97
• Yoo, Tae Hyeon (2008) Proteins of Novel Composition: Synthesis, Evolution, Dynamics; 10.7907/MKAG-YJ31
• Otey, Christopher Richard (2008) Structural and Functional Exploration of an Artificial Family of Cytochromes P450; 10.7907/MZQM-N011
• Maerkl, Sebastian Josef (2008) Microfluidic Large Scale Integration and its Application to Systems Biology; 10.7907/5CMX-CV08
• Bloom, Jesse D. (2007) Hidden Dimensions in Protein Evolution: Stability, Mutational Robustness, and Evolvability; 10.7907/3MNT-7W93
• Lassila, Jonathan Kyle (2007) Methods for Computational Enzyme Design and Application to the Chorismate-Prephenate Rearrangement; 10.7907/4xm1-h147
• Balagaddé, Frederick Kiguli (2007) Microfluidic Technologies for Continuous Culture and Genetic Circuit Characterization; 10.7907/NJ5Z-XV43
• Kwon, Inchan (2007) Protein Engineering via Site-Specific Incorporation of Nonnatural Amino Acids; 10.7907/XVPN-9P37
• Son, Soojin (2007) Biosynthetic Approaches to Protein Engineering Using Fluorinated Amino Acids; 10.7907/4dsq-m054
• Link, Aaron James (2006) Azide-Bearing Amino Acids in Protein Engineering and Proteomic Profiling; 10.7907/XXA2-5K11
• Collins, Cynthia Hollie (2006) Directed Evolution of the Transcriptional Activator LuxR; 10.7907/61qd-8j79
• Meyer, Michelle Margaret (2006) Exploring Protein Sequence Space Using Computationally Directed Recombination; 10.7907/YJPE-CD11
• Tobias, Alexander Vincent (2006) Directed Evolution of Biosynthetic Pathways to Carotenoids with Unnatural Carbon Backbones; 10.7907/WF0Q-2J98
• Drummond, David Allan (2006) Misfolding Dominates Protein Evolution; 10.7907/DH8E-2N10
• Shah, Premal S. (2005) Advances in Force Field Development and Sequence Optimization Methods for Computational Protein Design; 10.7907/mg9x-s593
• Meinhold, Peter (2005) Engineering Cytochrome P450 BM-3 for Selective Hydroxylation of Alkanes; 10.7907/aats-ca30
• Udit, Andrew K. (2005) P450 BM3 Electrochemistry and Electrocatalysis; 10.7907/wr4v-d345
• Endelman, Jeffrey B. (2005) Design and Analysis of Combinatorial Protein Libraries Created by Site-Directed Recombination; 10.7907/GF35-Q269
• Cirino, Patrick Carmen (2004) Laboratory Evolution of Cytochrome P450 Peroxygenase Activity; 10.7907/KWGR-DF47
• Voigt, Christopher Ashby (2003) Computationally Optimizing the Directed Evolution of Proteins; 10.7907/E4GF-EQ41
• Sun, Lianhong (2003) Engineering Galactose Oxidase to Increase Expression Level in E. coli, Enhance Thermostability and Introduce Novel Activities; 10.7907/PZ0M-T047
• Joern, John Michael (2003) Engineering Dioxygenases by Laboratory Evolution: A Comparison of Evolutionary Search Strategies; 10.7907/61KV-P379
• Thorsen, Todd Addison (2003) Microfluidic Technologies for High-Throughput Screening Applications; 10.7907/QGWY-VX32
• Lee, Cin-Young (2002) Efficient Automatic Engineering Design Synthesis Via Evolutionary Exploration; 10.7907/5HRP-ND58
• Tang, Yi (2002) Protein Engineering Using Unnatural Amino Acids: Incorporation of Leucine Analogs into Recombinant Protein in vivo; 10.7907/4cvy-8295
• Lee, Cin-Young (2002) Efficient Automatic Engineering Design Synthesis Via Evolutionary Exploration; 10.7907/5HRP-ND58
• Fu, Anne Yen-Chen (2002) Microfabricated Fluorescence-Activated Cell Sorters (µFACS) for Screening Bacterial Cells; 10.7907/6HKD-RQ61
• Fu, Anne Yen-Chen (2002) Microfabricated Fluorescence-Activated Cell Sorters (µFACS) for Screening Bacterial Cells; 10.7907/6HKD-RQ61
• Chou, Hou-Pu (2000) Microfabricated devices for rapid DNA diagnostics; 10.7907/0D20-Y875
• Zhao, Huimin (1998) Enzyme Design by Directed Evolution; 10.7907/3bcb-4g98
• Johnson, Robert David (1995) Multivalent protein binding to metal-complexing materials : applications to synthetic receptors and affinity chromatography; 10.7907/6kdk-t643
• Grant, Stanley Clement Baugh (1992) Detection and partitioning of bacteriophage in fluid/solid systems: application to the ecology and mobility of viruses in the environment; 10.7907/91MJ-XK16
• Sun, Yun (1992) NMR Studies of Protein-DNA Interactions: Determinations of DNA Structures Recognized by Bin Recombinase and Studies of Their Roles in Protein Binding Interactions; 10.7907/em1y-p761
• Hart, Roger A. (1991) Characterization of Vitreoscilla hemoglobin inclusion bodies produced in Escherichia coli; 10.7907/7504-m295
• Guske, Christopher James (1990) Metabolic modeling of growth and poly-[beta]-hydroxybutyrate (PHB) production in Alcaligenes eutrophus H16; 10.7907/J4NT-HG32
• Watnick, Paula Ivonne (1989) Cooperative Properties of Lipid Bilayers: Collective Director Fluctuations and the Effects of Hydrophobic Mismatch in Protein/Lipid Membrane Systems; 10.7907/j3wj-vz40
• Galazzo, Jorge Luis (1989) Effects of Cell Entrapment in Ca-alginate on the Metabolism of Yeast Saccharomyces cerevisiae; 10.7907/gq59-ka36
• Galazzo, Jorge Luis (1989) Effects of Cell Entrapment in Ca-alginate on the Metabolism of Yeast Saccharomyces cerevisiae; 10.7907/gq59-ka36
• Wittrup, Karl Dane (1989) Plasmid Propagation in the Yeast Saccharomyces cerevisiae: Flow Cytometry Studies and Segregated Modeling; 10.7907/KQYB-CX46
• Przybycien, Todd Michael (1989) Structure, Function and Aggregation Kinetics in Salt-Induced Protein Precipitation; 10.7907/2atq-2y42
• Przybycien, Todd Michael (1989) Structure, Function and Aggregation Kinetics in Salt-Induced Protein Precipitation; 10.7907/2atq-2y42
• Shanks, Jacqueline Vanni (1989) Metabolic Engineering Applications of in vivo ³¹P and ¹³C NMR Studies of Saccharomyces cerevisiae; 10.7907/tcbh-r327
• Shanks, Jacqueline Vanni (1989) Metabolic Engineering Applications of in vivo ³¹P and ¹³C NMR Studies of Saccharomyces cerevisiae; 10.7907/tcbh-r327
• McQueen, Anne T. (1989) Ammonium Ion Effects on Hybridoma Cell Physiology; 10.7907/a159-dy39
• McQueen, Anne T. (1989) Ammonium Ion Effects on Hybridoma Cell Physiology; 10.7907/a159-dy39
• Wittrup, Karl Dane (1989) Plasmid Propagation in the Yeast Saccharomyces cerevisiae: Flow Cytometry Studies and Segregated Modeling; 10.7907/KQYB-CX46
• Patrick, Valerie (1989) Synthesis, Characterization, and Kinetics of Mixed Copper-Aluminum and Iron-Aluminum Oxides for High-Temperature Desulfurization; 10.7907/2TRJ-1P91
• Reardon, Kenneth Frederick (1988) Deactivation and Regeneration Kinetics during Bioconversions by Immobilized Clostridium acetobutylicum; 10.7907/REWV-EA22
• Seressiotis, Alexandros (1988) Mathematical Models Based on Molecular Processes of the Cell; 10.7907/a9re-yr49
• O'Connor, Kim Claire (1987) The Effects of Immobilization on Structure and Substrate Activation of Glutamate Dehydrogenase; 10.7907/qavk-kj50