Davidson, Eric H.

Article from CaltechAUTHORS

• Wang, Lijun and Koppitch, Kari, et el. (2019) Developmental Effector Gene Regulation: Multiplexed Strategies for Functional Analysis; Developmental Biology; Vol. 445; No. 1; 68-79; PMCID PMC6321769; 10.1016/j.ydbio.2018.10.018
• Erkenbrack, Eric M. and Davidson, Eric H., et el. (2018) Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids; Development; Vol. 145; No. 24; Art. No. dev167288; PMCID PMC6307887; 10.1242/dev.167288
• Peter, Isabelle S. and Davidson, Eric H. (2017) Assessing regulatory information in developmental gene regulatory networks; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 23; 5862-5869; PMCID PMC5468647; 10.1073/pnas.1610616114
• Cui, Miao and Vielmas, Erika, et el. (2017) Sequential Response to Multiple Developmental Network Circuits Encoded in an Intronic cis- Regulatory Module of Sea Urchin hox11/13b; Cell Reports; Vol. 19; No. 2; 364-374; 10.1016/j.celrep.2017.03.039
• Choi, Harry M. T. and Calvert, Colby R., et el. (2016) Mapping a multiplexed zoo of mRNA expression; Development; Vol. 143; No. 19; 3632-3637; PMCID PMC5087610; 10.1242/dev.140137
• Barsi, Julius C. and Davidson, Eric H. (2016) Cis-regulatory control of the initial neurogenic pattern of onecut gene expression in the sea urchin embryo; Developmental Biology; Vol. 409; No. 1; 310-318; 10.1016/j.ydbio.2015.10.021
• Barsi, Julius C. and Tu, Qiang, et el. (2015) Genome-wide assessment of differential effector gene use in embryogenesis; Development; Vol. 142; No. 22; 3892-3901; PMCID PMC4712884; 10.1242/dev.127746
• Thompson, Jeffrey R. and Petsios, Elizabeth, et el. (2015) Reorganization of sea urchin gene regulatory networks at least 268 million years ago as revealed by oldest fossil cidaroid echinoid; Scientific Reports; Vol. 5; Art. No. 15541; PMCID PMC4614444; 10.1038/srep15541
• Erkenbrack, Eric M. and Davidson, Eric H. (2015) Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses; Proceedings of the National Academy of Sciences of the United States of America; Vol. 112; No. 30; E4075-E4084; PMCID PMC4522742; 10.1073/pnas.1509845112
• Gao, Feng and Thompson, Jeffrey R., et el. (2015) Juvenile skeletogenesis in anciently diverged sea urchin clades; Developmental Biology; Vol. 400; No. 1; 148-158; 10.1016/j.ydbio.2015.01.017
• Yin, Zongjun and Zhu, Maoyan, et el. (2015) Sponge grade body fossil with cellular resolution dating 60 Myr before the Cambrian; Proceedings of the National Academy of Sciences of the United States of America; Vol. 112; No. 12; E1453-E1460; PMCID PMC4378401; 10.1073/pnas.1414577112
• Barsi, Julius C. and Li, Enhu, et el. (2015) Geometric control of ciliated band regulatory states in the sea urchin embryo; Development; Vol. 142; No. 5; 953-961; PMCID PMC4352983; 10.1242/dev.117986
• Davidson, Eric H. (2015) Genomics, "Discovery Science," Systems Biology, and Causal Explanation: What Really Works?; Perspectives in Biology and Medicine; Vol. 58; No. 2; 165-181; 10.1353/pbm.2015.0025
• Davidson, Eric (2014) Brief Notes on the Meaning of a Genomic Control System for Animal Embryogenesis; Perspectives in Biology and Medicine; Vol. 57; No. 1; 78-86; 10.1353/pbm.2014.0009
• Cui, Miao and Siriwon, Natnaree, et el. (2014) Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 47; E5029-E5038; PMCID PMC4250154; 10.1073/pnas.1419141111
• Davidson, Eric H. (2014) A very brief scientific reminiscence of John Gurdon; Differentiation; Vol. 88; No. 1; 9; 10.1016/j.diff.2014.09.006
• Davidson, Eric H. (2014) The uncommon roles of common gene regulatory factors in the genomes of differentiating cells; EMBO Journal; Vol. 33; No. 11; 1193-1194; PMCID PMC4198022; 10.1002/embj.201488693
• Barsi, Julius C. and Tu, Qiang, et el. (2014) General approach for in vivo recovery of cell type-specific effector gene sets; Genome Research; Vol. 24; No. 5; 860-868; PMCID PMC4009615; 10.1101/gr.167668.113
• Li, Enhu and Cui, Miao, et el. (2014) Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 10; E906-E913; PMCID PMC3956148; 10.1073/pnas.1323105111
• Tu, Qiang and Cameron, R. Andrew, et el. (2014) Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus; Developmental Biology; Vol. 385; No. 2; 160-167; PMCID PMC3898891; 10.1016/j.ydbio.2013.11.019
• Li, Enhu and Materna, Stefan C., et el. (2013) New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN; Developmental Biology; Vol. 382; No. 1; 268-279; PMCID PMC3783610; 10.1016/j.ydbio.2013.07.027
• Faure, Emmanuel and Peter, Isabelle S., et el. (2013) A New Software Package for Predictive Gene Regulatory Network Modeling and Redesign; Journal of Computational Biology; Vol. 20; No. 6; 419-423; PMCID PMC3667423; 10.1089/cmb.2012.0297
• Materna, Stefan C. and Ransick, Andrew, et el. (2013) Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos; Developmental Biology; Vol. 375; No. 1; 92-104; PMCID PMC3570723; 10.1016/j.ydbio.2012.11.033
• Ben-Tabou de-Leon, Smadar and Su, Yi-Hsien, et el. (2013) Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs,and cell fate lockdown; Developmental Biology; Vol. 374; No. 1; 245-254; PMCID PMC3548969; 10.1016/j.ydbio.2012.11.013
• Peter, Isabelle S. and Faure, Emmanuel, et el. (2012) Predictive computation of genomic logic processing functions in embryonic development; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 41; 16434-16442; PMCID PMC3478651; 10.1073/pnas.1207852109
• Tu, Qiang and Cameron, R. Andrew, et el. (2012) Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis; Genome Research; Vol. 22; No. 10; 2079-2087; PMCID PMC3460201; 10.1101/gr.139170.112
• Li, Enhu and Materna, Stefan C., et el. (2012) Direct and in direct control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo; Developmental Biology; Vol. 369; No. 2; 377-385; PMCID PMC3423475; 10.1016/j.ydbio.2012.06.022
• Nam, Jongmin and Davidson, Eric H. (2012) Barcoded DNA-Tag Reporters for Multiplex Cis-Regulatory Analysis; PLoS ONE; Vol. 7; No. 4; Art. No. e35934; PMCID PMC3339872; 10.1371/journal.pone.0035934
• Davidson, Eric H. (2012) Roy J. Britten, 1919–2012: Our early years at Caltech; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 17; 6358-6359; PMCID PMC3340058; 10.1073/pnas.1204420109
• Ransick, Andrew and Davidson, Eric H. (2012) Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis; Developmental Biology; Vol. 364; No. 2; 259-267; PMCID PMC3561781; 10.1016/j.ydbio.2012.02.003
• Davidson, Eric (2012) Q & A - Eric Davidson; Current Biology; Vol. 22; No. 7; R216-R217; 10.1016/j.cub.2011.12.047
• Materna, Stefan C. and Davidson, Eric H. (2012) A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos; Developmental Biology; Vol. 364; No. 1; 77-87; PMCID PMC3294105; 10.1016/j.ydbio.2012.01.017
• Davidson, Eric H. (2012) Roy J. Britten (1919–2012); Science; Vol. 335; No. 6073; 1183; 10.1126/science.1220828
• Damle, Sagar S. and Davidson, Eric H. (2012) Synthetic in vivo validation of gene network circuitry; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 5; 1548-1553; PMCID PMC3277137; 10.1073/pnas.1119905109
• Damle, Sagar and Davidson, Eric H. (2011) Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus; Developmental Biology; Vol. 357; No. 2; 505-517; PMCID PMC3164750; 10.1016/j.ydbio.2011.06.016
• Davidson, Eric H. (2011) Evolutionary bioscience as regulatory systems biology; Developmental Biology; Vol. 357; No. 1; 35-40; PMCID PMC3135751; 10.1016/j.ydbio.2011.02.004
• Royo, José Luis and Maeso, Ignacio, et el. (2011) Transphyletic conservation of developmental regulatory state in animal evolution; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 34; 14186-14191; PMCID PMC3161536; 10.1073/pnas.1109037108
• Peter, Isabelle S. and Davidson, Eric H. (2011) A gene regulatory network controlling the embryonic specification of endoderm; Nature; Vol. 474; No. 7353; 635-639; PMCID PMC3976212; 10.1038/nature10100
• Peter, Isabelle S. and Davidson, Eric H. (2011) Evolution of Gene Regulatory Networks Controlling Body Plan Development; Cell; Vol. 144; No. 6; 970-985; PMCID PMC3076009; 10.1016/j.cell.2011.02.017
• Davidson, Eric H. (2010) Emerging properties of animal gene regulatory networks; Nature; Vol. 468; No. 7326; 911-920; PMCID PMC3967874; 10.1038/nature09645
• Ben-Tabou de-Leon, Smadar and Davidson, Eric H. (2010) Information processing at the foxa node of the sea urchin endomesoderm specification network; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 22; 10103-10108; PMCID PMC2890477; 10.1073/pnas.1004824107
• Materna, Stefan C. and Nam, Jongmin, et el. (2010) High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development; Gene Expression Patterns; Vol. 10; No. 4-5; 177-184; PMCID PMC2902461; 10.1016/j.gep.2010.04.002
• Davidson, Eric H. and Erwin, Douglas H. (2010) Evolutionary innovation and stability in animal gene networks; Journal of Experimental Zoology Part B; Vol. 314; No. 3; 182-186; 10.1002/jez.b.21329
• Peter, Isabelle S. and Davidson, Eric H. (2010) The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage; Developmental Biology; Vol. 340; No. 2; 188-199; PMCID PMC3981691; 10.1016/j.ydbio.2009.10.037
• Bolouri, Hamid and Davidson, Eric H. (2010) The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example; Developmental Biology; Vol. 340; No. 2; 170-178; PMCID PMC2854306; 10.1016/j.ydbio.2009.06.007
• Davidson, Eric (2010) Leader for DB "Developmental Gene Regulatory Networks" Collection; Developmental Biology; Vol. 340; No. 2; 160; 10.1016/j.ydbio.2010.03.020
• Ptashne, Mark and Hobert, Oliver, et el. (2010) Questions over the scientific basis of epigenome project; Nature; Vol. 464; No. 7288; 487; 10.1038/464487c
• Nam, Jongmin and Dong, Ping, et el. (2010) Functional cis-regulatory genomics for systems biology; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 8; 3930-3935; PMCID PMC2840491; 10.1073/pnas.1000147107
• Peter, Isabelle S. and Davidson, Eric H. (2009) Modularity and design principles in the sea urchin embryo gene regulatory network; FEBS Letters; Vol. 583; No. 24; 3948-3958; PMCID PMC2810318; 10.1016/j.febslet.2009.11.060
• Cameron, R. Andrew and Davidson, Eric H. (2009) Flexibility of transcription factor target site position in conserved cis-regulatory modules; Developmental Biology; Vol. 336; No. 1; 122-135; 10.1016/j.ydbio.2009.09.018
• Davidson, Eric H. (2009) Network design principles from the sea urchin embryo; Current Opinion in Genetics and Development; Vol. 19; No. 6; 535-540; PMCID PMC3428372; 10.1016/j.gde.2009.10.007
• Wahl, Mary E. and Hahn, Julie, et el. (2009) The cis-regulatory system of the tbrain gene: Alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo; Developmental Biology; Vol. 335; No. 2; 428-441; PMCID PMC2784196; 10.1016/j.ydbio.2009.08.005
• Smith, Joel and Davidson, Eric H. (2009) Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring; Proceedings of the National Academy of Sciences of the United States of America; Vol. 106; No. 43; 18291-18296; PMCID PMC2775351; 10.1073/pnas.0910007106
• Chen, Jun-Yuan and Bottjer, David J., et el. (2009) Phase contrast synchrotron X-ray microtomography of Ediacaran (Doushantuo) metazoan microfossils: Phylogenetic diversity and evolutionary implications; Precambrian Research; Vol. 173; No. 1-4; 191-200; 10.1016/j.precamres.2009.04.004
• Ben-Tabou de-Leon, Smadar and Davidson, Eric H. (2009) Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology; Wiley Interdisciplinary Reviews. Systems Biology and Medicine; Vol. 1; No. 2; 237-246; PMCID PMC2836836; 10.1002/wsbm.24
• Li, Enhu and Davidson, Eric H. (2009) Building developmental gene regulatory networks; Birth Defects Research Part C – Embryo Today – Reviews; Vol. 87; No. 2; 123-130; PMCID PMC2747644; 10.1002/bdrc.20152
• Su, Yi-Hsien and Li, Enhu, et el. (2009) A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo; Developmental Biology; Vol. 329; No. 2; 410-421; PMCID PMC2677136; 10.1016/j.ydbio.2009.02.029
• Davidson, Eric H. (2009) Developmental biology at the systems level; Biochimica et Biophysica Acta; Vol. 1789; No. 4; 248-249; 10.1016/j.bbagrm.2008.11.001
• Longabaugh, William J. R. and Davidson, Eric H., et el. (2009) Visualization, documentation, analysis, and communication of large-scale gene regulatory networks; Biochimica et Biophysica Acta; Vol. 1789; No. 4; 363-374; PMCID PMC2762351; 10.1016/j.bbagrm.2008.07.014
• Erwin, Douglas H. and Davidson, Eric H. (2009) The evolution of hierarchical gene regulatory networks; Nature Reviews. Genetics; Vol. 10; No. 2; 141-148; 10.1038/nrg2499
• Ben-Tabou de-Leon, Samadar and Davidson, Eric H. (2009) Modeling the dynamics of transcriptional gene regulatory networks for animal development; Developmental Biology; Vol. 325; No. 2; 317-328; PMCID PMC4100934; 10.1016/j.ydbio.2008.10.043
• Cameron, R. Andrew and Samanta, Manoj, et el. (2009) SpBase: the sea urchin genome database and web site; Nucleic Acids Research; Vol. 37; No. S1; D750-D754; PMCID PMC2686435; 10.1093/nar/gkn887
• Peter, Isabelle S. and Davidson, Eric H. (2009) Genomic control of patterning; International Journal of Developmental Biology; Vol. 53; No. 5-6; 707-716; PMCID PMC3967875; 10.1387/ijdb.072495ip
• Davidson, E. H. and Erwin, D. H. (2009) An Integrated View of Precambrian Eumetazoan Evolution; Cold Spring Harbor Symposia on Quantitative Biology; Vol. 74; 65-80; 10.1101/sqb.2009.74.042
• Smith, Joel and Davidson, Eric H. (2008) Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 51; 20089-20094; PMCID PMC2629318; 10.1073/pnas.0806442105
• Davidson, Eric H. and Levine, Michael S. (2008) Properties of developmental gene regulatory networks; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 51; 20063-20066; PMCID PMC2629280; 10.1073/pnas.0806007105
• Smith, Joel and Davidson, Eric H. (2008) A new method, using cis-regulatory control, for blocking embryonic gene expression; Developmental Biology; Vol. 318; No. 2; 360-365; PMCID PMC3929273; 10.1016/j.ydbio.2008.02.056
• Gao, Feng and Davidson, Eric H. (2008) Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 16; 6091-6096; PMCID PMC2329712; 10.1073/pnas.0801201105
• Oliveri, Paola and Tu, Qiang, et el. (2008) Global regulatory logic for specification of an embryonic cell lineage; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 16; 5955-5962; PMCID PMC2329687; 10.1073/pnas.0711220105
• Geiss, Gary K. and Bumgarner, Roger E., et el. (2008) Direct multiplexed measurement of gene expression with color-coded probe pairs; Nature Biotechnology; Vol. 26; No. 3; 317-325; 10.1038/nbt1385
• Laubichler, Manfred D. and Davidson, Eric H. (2008) Boveri's long experiment: Sea urchin merogones and the establishment of the role of nuclear chromosomes in development; Developmental Biology; Vol. 314; No. 1; 1-11; PMCID PMC2247478; 10.1016/j.ydbio.2007.11.024
• Cameron, R. Andrew and Davidson, Eric H. (2007) A basal deuterostome genome viewed as a natural experiment; Gene; Vol. 406; No. 1-2; 1-7; PMCID PMC2200295; 10.1016/j.gene.2007.04.031
• Hinman, Veronica F. and Nguyen, Albert, et el. (2007) Caught in the evolutionary act: Precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins; Developmental Biology; Vol. 312; No. 2; 584-595; 10.1016/j.ydbio.2007.09.006
• Hinman, Veronica F. and Davidson, Eric H. (2007) Evolutionary plasticity of developmental gene regulatory network architecture; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 49; 19404-19409; PMCID PMC2148302; 10.1073/pnas.0709994104
• Smith, Joel and Theodoris, Christina, et el. (2007) A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression; Science; Vol. 318; No. 5851; 794-797; 10.1126/science.1146524
• Istrail, Sorin and Ben-Tabou de-Leon, Smadar, et el. (2007) The regulatory genome and the computer; Developmental Biology; Vol. 310; No. 2; 187-195; 10.1016/j.ydbio.2007.08.009
• Materna, Stefan C. and Davidson, Eric H. (2007) Logic of gene regulatory networks; Current Opinion in Biotechnology; Vol. 18; No. 4; 351-354; PMCID PMC2031216; 10.1016/j.copbio.2007.07.008
• Revilla-i-Domingo, Roger and Oliveri, Paola, et el. (2007) A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 30; 12383-12388; PMCID PMC1941478; 10.1073/pnas.0705324104
• Lee, Pei Yun and Nam, Jongmin, et el. (2007) Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrorus purpuratus embryo; Developmental Biology; Vol. 307; No. 2; 434-445; 10.1016/j.ydbio.2007.05.005
• Nam, Jongmin and Su, Yi-Hsien, et el. (2007) Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network; Developmental Biology; Vol. 306; No. 2; 860-869; PMCID PMC2063469; 10.1016/j.ydbio.2007.03.033
• Ben-Tabou de-Leon, Samadar and Davidson, Eric H. (2007) Gene Regulation: Gene Control Network in Development; Annual Review of Biophysics and Biomolecular Structure; Vol. 36; 191-212; 10.1146/annurev.biophys.35.040405.102002
• Vokes, Steven A. and Ji, Hongkai, et el. (2007) Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning; Development; Vol. 134; No. 10; 1977 -1989; 10.1242/dev.001966
• Oliveri, Paola and Davidson, Eric H. (2007) Built to Run, Not Fail; Science; Vol. 315; No. 5818; 1510-1511; 10.1126/science.1140979
• Livi, Carolina B. and Davidson, Eric H. (2007) Regulation of spblimp1/krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula; Gene Expression Patterns; Vol. 7; No. 1-2; 1-7; 10.1016/j.modgep.2006.04.009
• Howard-Ashby, Meredith and Materna, Stefan C., et el. (2006) Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus; Developmental Biology; Vol. 300; No. 1; 90-107; 10.1016/j.ydbio.2006.08.033
• Howard-Ashby, Meredith and Materna, Stefan C., et el. (2006) High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution; Developmental Biology; Vol. 300; No. 1; 27-34; PMCID PMC1790870; 10.1016/j.ydbio.2006.10.016
• Tu, Qiang and Brown, C. Titus, et el. (2006) Sea urchin Forkhead gene family: Phylogeny and embryonic expression; Developmental Biology; Vol. 300; No. 1; 49-62; 10.1016/j.ydbio.2006.09.031
• Davidson, Eric (2006) Special issue: The sea urchin genome; Developmental Biology; Vol. 300; No. 1; 1-1; 10.1016/j.ydbio.2006.10.036
• Howard-Ashby, Meredith and Materna, Stefan C., et el. (2006) Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development; Developmental Biology; Vol. 300; No. 1; 74-89; 10.1016/j.ydbio.2006.08.039
• Materna, Stefan C. and Howard-Ashby, Meredith, et el. (2006) The C_2H_2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development; Developmental Biology; Vol. 300; No. 1; 108-120; 10.1016/j.ydbio.2006.08.032
• Damle, Sagar and Hanser, Bridget, et el. (2006) Confocal quantification of cis-regulatory reporter gene expression in living sea urchin; Developmental Biology; Vol. 299; No. 2; 543-550; 10.1016/j.ydbio.2006.06.016
• Ben-Tabou de-Leon, Smadar and Davidson, Eric H. (2006) Deciphering the Underlying Mechanism of Specification and Differentiation: The Sea Urchin Gene Regulatory Network; Science's STKE: signal transduction knowledge environment; Vol. 2006; No. 361; Art. No. pe 47; 10.1126/stke.3612006pe47
• Sodergren, Erica and Davidson, Eric H., et el. (2006) The Genome of the Sea Urchin Strongylocentrotus purpuratus; Science; Vol. 314; No. 5801; 941-952; PMCID PMC3159423; 10.1126/science.1133609
• Bottjer, David J. and Davidson, Eric H., et el. (2006) Paleogenomics of Echinoderms; Science; Vol. 314; No. 5801; 956-960; 10.1126/science.1132310
• Samanta, Manoj P. and Tongprasit, Waraporn, et el. (2006) The Transcriptome of the Sea Urchin Embryo; Science; Vol. 314; No. 5801; 960-962; 10.1126/science.1131898
• Davidson, Eric H. (2006) The Sea Urchin Genome: Where Will It Lead Us?; Science; Vol. 314; No. 5801; 939-940; 10.1126/science.1136252
• Oliveri, Paola and Walton, Katherine D., et el. (2006) Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo; Development; Vol. 133; No. 21; 4173-4181; 10.1242/10.1242/dev.02577
• Ransick, Andrew and Davidson, Eric H. (2006) cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification; Developmental Biology; Vol. 297; No. 2; 587-602; 10.1016/j.ydbio.2006.05.037
• Arenas-Mena, César and Cameron, R. Andrew, et el. (2006) Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo; Development, Growth & Differentiation; Vol. 48; No. 7; 463-472; 10.1111/j.1440-169X.2006.00883.x
• Erwin, Douglas H. and Davidson, Eric H. (2006) Response to Comment on "Gene Regulatory Networks and the Evolution of Animal Body Plans"; Science; Vol. 313; No. 5788; 761; 10.1126/science.1126765
• Chen, Jun-Yuan and Bottjer, David J., et el. (2006) Phosphatized Polar Lobe-Forming Embryos from the Precambrian of Southwest China; Science; Vol. 312; No. 5780; 1644-1646; 10.1126/science.1125964
• Livi, Carolina B. and Davidson, Eric H. (2006) Expression and function of blimp1/krox, an alternatively transcribed regulatory gene of the sea urchin endomesoderm network; Developmental Biology; Vol. 293; No. 2; 513-525; 10.1016/j.ydbio.2006.02.021
• Amore, Gabriele and Davidson, Eric H. (2006) cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo; Developmental Biology; Vol. 293; No. 2; 555-564; 10.1016/j.ydbio.2006.02.024
• Davidson, Eric H. and Erwin, Douglas H. (2006) Gene Regulatory Networks and the Evolution of Animal Body Plans; Science; Vol. 311; No. 5762; 796-800; 10.1126/science.1113832
• Cameron, R. Andrew and Rowen, Lee, et el. (2006) Unusual Gene Order and Organization of the Sea Urchin Hox Cluster; Journal of Experimental Zoology Part B; Vol. 306B; No. 1; 45-58; 10.1002/jez.b.21070
• Cameron, R. Andrew and Chow, Suk Hen, et el. (2005) An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules; Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 33; 11769-11774; PMCID PMC1188003; 10.1073/pnas.0505291102
• Longabaugh, William J. R. and Davidson, Eric H., et el. (2005) Computational representation of developmental genetic regulatory networks; Developmental Biology; Vol. 283; No. 1; 1-16; 10.1016/j.ydbio.2005.04.023
• Yuh, Chiou-Hwa and Dorman, Elizabeth R., et el. (2005) Brn1/2/4, the predicted midgut regulator of the endo16 gene of the sea urchin embryo; Developmental Biology; Vol. 281; No. 2; 286-298; 10.1016/j.ydbio.2005.02.034
• Istrail, Sorin and Davidson, Eric H. (2005) Logic functions of the genomic cis-regulatory code; Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 14; 4954-4959; PMCID PMC555989; 10.1073/pnas.0409624102
• Levine, Michael and Davidson, Eric H. (2005) Gene regulatory networks for development; Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 14; 4936-4942; PMCID PMC555974; 10.1073/pnas.0408031102
• Brown, C. Titus and Xie, Yuan, et el. (2005) Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison; BMC Bioinformatics; Vol. 6; No. 70; 1-7; PMCID PMC1087472; 10.1186/1471-2105-6-70
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• Galau, Glenn A. and Klein, William H., et el. (1976) Structural Gene Sets Active in Embryos and Adult Tissues of the Sea Urchin; Cell; Vol. 7; No. 4; 487-505; 10.1016/0092-8674(76)90200-2
• Crain, William R. and Davidson, Eric H., et el. (1976) Contrasting patterns of DNA sequence arrangement in Apis mellifera (Honeybee) and Musca domestica (housefly); Chromosoma; Vol. 59; No. 1; 1-12; 10.1007/BF00327705
• Britten, Roy J. and Graham, Dale E., et el. (1976) Evolutionary divergence and length of repetitive sequences in sea urchin DNA; Journal of Molecular Evolution; Vol. 9; No. 1; 1-23; 10.1007/BF01796119
• Britten, Roy J. and Davidson, Eric H. (1976) Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 73; No. 2; 415-419; PMCID PMC335919
• Smith, Michael J. and Britten, Roy J., et el. (1975) Studies on nucleic acid reassociation kinetics: Reactivity of single-stranded tails in DNA-DNA renaturation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 72; No. 12; 4805-4809; PMCID PMC388820
• Davidson, Eric H. and Galau, Glenn A., et el. (1975) Comparative aspects of DNA organization in metazoa; Chromosoma; Vol. 51; No. 3; 253-259; 10.1007/BF00284818
• Goldberg, Robert B. and Crain, William R., et el. (1975) DNA sequence organization in the genomes of five marine invertebrates; Chromosoma; Vol. 51; No. 3; 225-251; 10.1007/BF00284817
• Angerer, Robert C. and Davidson, Eric H., et el. (1975) DNA Sequence Organization in the Mollusc Aplysia Californica; Cell; Vol. 6; No. 1; 29-40; 10.1016/0092-8674(75)90070-7
• Chamberlin, Margaret E. and Britten, Roy J., et el. (1975) Sequence Organization in Xenopus DNA Studied by the Electron Microscope; Journal of Molecular Biology; Vol. 96; No. 2; 317-333; 10.1016/0022-2836(75)90351-4
• Hough, Barbara R. and Smith, Michael J., et el. (1975) Sequence complexity of heterogeneous nuclear RNA in sea urchin embryos; Cell; Vol. 5; No. 3; 291-299; 10.1016/0092-8674(75)90104-X
• Davidson, Eric H. and Hough-Evans, Barbara R., et el. (1975) Structural genes adjacent to interspersed repetitive DNA sequences; Cell; Vol. 4; No. 3; 217-238; 10.1016/0092-8674(75)90170-1
• Davidson, Eric H. and Britten, Roy J. (1974) Molecular Aspects of Gene Regulation in Animal Cells; Cancer Research; Vol. 34; No. 8; 2034-2043
• Smith, Michael J. and Hough, Barbara R., et el. (1974) Repetitive and non-repetitive sequence in sea urchin heterogeneous nuclear RNA; Journal of Molecular Biology; Vol. 85; No. 1; 103-126; 10.1016/0022-2836(74)90132-6
• Galau, Glenn A. and Britten, Roy J., et el. (1974) A Measurement of the Sequence Complexity of Polysomal Messenger RNA in Sea Urchin Embryos; Cell; Vol. 2; No. 1; 9-21; 10.1016/0092-8674(74)90003-8
• Klein, William H. and Murphy, William, et el. (1974) Distribution of repetitive and nonrepetitive sequence transcripts in HeLa mRNA; Proceedings of the National Academy of Sciences of the United States of America; Vol. 71; No. 5; 1785-1789; PMCID PMC388325
• Goldberg, Robert B. and Galau, Glenn A., et el. (1973) Nonrepetitive DNA sequence representation in sea urchin embryo messenger RNA; Proceedings of the National Academy of Sciences of the United States of America; Vol. 70; No. 12, Pt; 3516-3520; PMCID PMC427271
• Davidson, Eric H. and Britten, Roy J. (1973) Organization, Transcription, and Regulation in the Animal Genome; Quarterly Review of Biology; Vol. 48; No. 4; 565-613
• Hough, Barbara R. and Yancey, Paul H., et el. (1973) Persistence of maternal RNA in Engystomops embryos; Journal of Experimental Zoology; Vol. 185; No. 3; 357-368; 10.1002/jez.1401850310
• Davidson, Eric H. and Hough, Barbara R., et el. (1973) General interspersion of repetitive with non-repetitive sequence elements in the DNA of Xenopus; Journal of Molecular Biology; Vol. 77; No. 1; 1-23; 10.1016/0022-2836(73)90359-8
• Davidson, E. H. and Freeman, G., et el. (1972) Report on the 1972 MBL Embryology Course, Woods Hole, Massachusetts; Developmental Biology; Vol. 29; No. 3; f29-f31; 10.1016/0012-1606(72)90075-9
• Hough, Barbara R. and Davidson, Eric H. (1972) Studies on the repetitive sequence transcripts of Xenopus oocytes; Journal of Molecular Biology; Vol. 70; No. 3; 491-509; 10.1016/0022-2836(72)90555-4
• Davidson, Eric H. and Britten, Roy J. (1971) Note on the Control of Gene Expression during Development; Journal of Theoretical Biology; Vol. 32; No. 1; 123-130; 10.1016/0022-5193(71)90140-8
• Davidson, Eric H. and Hough, Barbara R., et el. (1971) Sequence repetition in the DNA of Nassaria (Ilyanassa) obsoleta; Developmental Biology; Vol. 25; No. 3; 445-463; 10.1016/0012-1606(71)90041-8
• Britten, Roy J. and Davidson, Eric H. (1971) Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty; Quarterly Review of Biology; Vol. 46; No. 2; 111-138; 10.1086/406830
• Davidson, Eric H. and Hough, Barbara R. (1971) Genetic information in Oocyte RNA; Journal of Molecular Biology; Vol. 56; No. 3; 491-506; 10.1016/0022-2836(71)90396-2
• Davidson, Eric H. and Hough, Barbara R. (1969) Synchronous oogenesis in Engystomops pustulosus, a neotropic anuran suitable for laboratory studies: Localization in the embryo of RNA synthesized at the lampbrush stage; Journal of Experimental Zoology; Vol. 172; No. 1; 25-48; 10.1002/jez.1401720104
• Britten, Roy J. and Davidson, Eric H. (1969) Gene Regulation for Higher Cells: A Theory; Science; Vol. 165; No. 3891; 349-357; 10.1126/science.165.3891.349
• Davidson, Eric H. and Hough, Barbara R. (1969) High sequence diversity in the RNA synthesized at the lampbrush stage of oogenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 63; No. 2; 342-349; PMCID PMC223570
• Mirsky, A. E. and Burdick, C. J., et el. (1968) The role of lysine-rich histone in the maintenance of chromatin structure in metaphase chromosomes; Proceedings of the National Academy of Sciences of the United States of America; Vol. 61; No. 2; 592-597; PMCID PMC225201
• Davidson, Eric H. and Crippa, Marco, et el. (1968) Evidence for the appearance of novel gene products during amphibian blastulation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 60; No. 1; 152-159; PMCID PMC539095; 10.1073/pnas.60.1.152
• Crippa, Marco and Davidson, Eric H., et el. (1967) Persistence in Early Amphibian Embryos of Informational RNA's from the Lampbrush Chromosome Stage of Oogenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 57; No. 4; 885-892; PMCID PMC224630
• Davidson, Eric H. and Crippa, Marco, et el. (1966) Genomic function during the lampbrush chromosome stage of amphibian oogenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 56; No. 3; 856-863; PMCID PMC219939; 10.1073/pnas.56.3.856
• Bachvarova, R. and Davidson, E. H., et el. (1966) Activation of RNA Synthesis Associated with Gastrulation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 55; No. 2; 358-365; PMCID PMC224149
• Davidson, Eric H. and Haslett, G. W., et el. (1965) Evidence for prelocalization of cytoplasmic factors affecting gene activation in early embryogenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 54; No. 3; 696-704; PMCID PMC219730; 10.1073/pnas.54.3.696
• Davidson, Eric H. and Allfrey, V. G., et el. (1964) On the RNA synthesized during the lampbrush phase of amphibian oogenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 52; No. 2; 501-508; PMCID PMC300305; 10.1073/pnas.52.2.501
• Davidson, E. H. (1963) Heritability and Control of Differentiated Function in Cultured Cells; Journal of General Physiology; Vol. 46; No. 5; 983-998; PMCID PMC2195304; 10.1085/jgp.46.5.983
• Davidson, E. H. and Allfrey, V. G., et el. (1963) Gene expression in differentiated cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 49; No. 1; 53-60; PMCID PMC300628; 10.1073/pnas.49.1.53