@article{https://authors.library.caltech.edu/records/1zb8r-5xa88, title = "Synthetic protein circuits for programmable control of mammalian cell death", journal = "Cell", year = "2024", url = "https://authors.library.caltech.edu/records/1zb8r-5xa88", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2024.03.031", volume = "187", pmcid = "PMC11127782" } @article{https://authors.library.caltech.edu/records/zz876-8vm73, title = "Lineage motifs as developmental modules for control of cell type proportions", journal = "Developmental Cell", year = "2024", url = "https://authors.library.caltech.edu/records/zz876-8vm73", id = "record", issn = "1534-5807", volume = "59", pmcid = "PMC10910499" } @article{https://authors.library.caltech.edu/records/y9p3r-dma37, title = "Combinatorial expression motifs in signaling pathways", journal = "Cell Genomics", year = "2024", url = "https://authors.library.caltech.edu/records/y9p3r-dma37", id = "record", issn = "2666-979X", doi = "10.1016/j.xgen.2023.100463", volume = "4", pmcid = "PMC10794782" } @article{https://authors.library.caltech.edu/records/42eqy-fkv91, title = "Tuning Methylation-Dependent Silencing Dynamics by Synthetic Modulation of CpG Density", journal = "ACS Synthetic Biology", year = "2023", url = "https://authors.library.caltech.edu/records/42eqy-fkv91", id = "record", issn = "2161-5063", doi = "10.1021/acssynbio.3c00078", volume = "12", pmcid = "PMC10510725" } @article{https://authors.library.caltech.edu/records/5wh3x-cj477, title = "Engineering RNA export for measurement and manipulation of living cells", journal = "Cell", year = "2023", url = "https://authors.library.caltech.edu/records/5wh3x-cj477", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2023.06.013", volume = "186", pmcid = "PMC10528933" } @article{https://authors.library.caltech.edu/records/hj8zd-08q75, title = "Reconstitution of morphogen shuttling circuits", journal = "Science Advances", year = "2023", url = "https://authors.library.caltech.edu/records/hj8zd-08q75", id = "record", issn = "2375-2548", doi = "10.1126/sciadv.adf9336", volume = "9", pmcid = "PMC10337948" } @article{https://authors.library.caltech.edu/records/chs4b-tpy53, title = "The computational capabilities of many-to-many protein interaction networks", journal = "Cell Systems", year = "2023", url = "https://authors.library.caltech.edu/records/chs4b-tpy53", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2023.05.001", volume = "14", pmcid = "PMC10318606" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20230613-730735700.10, title = "Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis", journal = "Science Immunology", year = "2023", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230613-730735700.10", id = "record", issn = "2470-9468", doi = "10.1126/sciimmunol.adg3196", volume = "8", pmcid = "PMC10338320" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20230203-893712500.43, title = "The sound of silence: Transgene silencing in mammalian cell engineering", journal = "Cell Systems", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230203-893712500.43", id = "record", doi = "10.1016/j.cels.2022.11.005", volume = "13", pmcid = "PMC9880859" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20230221-18374200.6, title = "Periodic spatial patterning with a single morphogen", journal = "Cell Systems", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230221-18374200.6", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2022.11.001", volume = "13" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20221010-454096500.25, title = "Embryo model completes gastrulation to neurulation and organogenesis", journal = "Nature", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20221010-454096500.25", id = "record", issn = "0028-0836", doi = "10.1038/s41586-022-05246-3", volume = "610", pmcid = "PMC9534772" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200727-084029052, title = "Dynamics and functional roles of splicing factor autoregulation", journal = "Cell Reports", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200727-084029052", id = "record", issn = "2211-1247", doi = "10.1016/j.celrep.2022.110985", volume = "39", pmcid = "PMC9262138" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20201210-134335099, title = "Ligand-receptor promiscuity enables cellular addressing", journal = "Cell Systems", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20201210-134335099", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2022.03.001", volume = "13", pmcid = "PMC10897978" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20201210-094756085, title = "The context-dependent, combinatorial logic of BMP signaling", journal = "Cell Systems", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20201210-094756085", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2022.03.002", volume = "13", pmcid = "PMC9127470" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200909-145940519, title = "Synthetic mammalian signaling circuits for robust cell population control", journal = "Cell", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200909-145940519", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2022.01.026", volume = "185", pmcid = "PMC8995209" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20211026-141150169, title = "Protease-controlled secretion and display of intercellular signals", journal = "Nature Communications", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20211026-141150169", id = "record", issn = "2041-1723", doi = "10.1038/s41467-022-28623-y", volume = "13", pmcid = "PMC8854555" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20210212-105104460, title = "Synthetic multistability in mammalian cells", journal = "Science", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210212-105104460", id = "record", issn = "0036-8075", doi = "10.1126/science.abg9765", volume = "375" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20211008-183538677, title = "Single cell biology—a Keystone Symposia report", journal = "Annals of the New York Academy of Sciences", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20211008-183538677", id = "record", issn = "0077-8923", doi = "10.1111/nyas.14692", volume = "1506" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20210628-191053293, title = "Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees", journal = "Cell Systems", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210628-191053293", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2021.05.008", volume = "12" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20210413-072526147, title = "Programmable protein circuit design", journal = "Cell", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210413-072526147", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2021.03.007", volume = "184", pmcid = "PMC8087657" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200225-135944187, title = "Imaging cell lineage with a synthetic digital recording system", journal = "Science", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200225-135944187", id = "record", issn = "0036-8075", doi = "10.1126/science.abb3099", volume = "372" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20190920-163128957, title = "In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription", journal = "Nature Biotechnology", year = "2020", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190920-163128957", id = "record", issn = "1087-0156", doi = "10.1038/s41587-019-0299-4", volume = "38", pmcid = "PMC6954335" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181107-102333115, title = "Constitutive splicing and economies of scale in gene expression", journal = "Nature Structural \& Molecular Biology", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181107-102333115", id = "record", issn = "1545-9985", doi = "10.1038/s41594-019-0226-x", volume = "26", pmcid = "PMC6663491" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20190718-110919202, title = "Communication codes in developmental signaling pathways", journal = "Development", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190718-110919202", id = "record", issn = "0950-1991", doi = "10.1242/dev.170977", volume = "146", pmcid = "PMC6602343" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181030-150639915, title = "Cis-activation in the Notch signaling pathway", journal = "eLife", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-150639915", id = "record", issn = "2050-084X", doi = "10.7554/eLife.37880", volume = "8", pmcid = "PMC6345567" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181030-143317624, title = "A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment", journal = "eLife", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-143317624", id = "record", issn = "2050-084X", doi = "10.7554/eLife.37851", volume = "7", pmcid = "PMC6245732" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181010-111625116, title = "Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback", journal = "Cell Systems", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181010-111625116", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2018.08.012", volume = "7" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181024-102930532, title = "Novel NOTCH-Binding Protein Directs Self-Renewal of Tumor-Initiating Stem-like Cells and HCC Development through Cell Fate Reprogramming", journal = "Hepatology", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181024-102930532", id = "record", issn = "0270-9139", doi = "10.1002/hep.30257", volume = "68" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180920-125150716, title = "Programmable protein circuits in living cells", journal = "Science", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180920-125150716", id = "record", issn = "0036-8075", doi = "10.1126/science.aat5062", volume = "361", pmcid = "PMC7176481" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20181009-132205192, title = "Cell fate and metabolic reprogramming of tumor-initiating stem-like cells", journal = "Alcoholism: Clinical and Experimental Research", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181009-132205192", id = "record", issn = "0145-6008", doi = "10.1111/acer.13834", volume = "42" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180604-074815229, title = "Metabolic interactions between dynamic bacterial subpopulations", journal = "eLife", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180604-074815229", id = "record", issn = "2050-084X", doi = "10.7554/eLife.33099", volume = "7", pmcid = "PMC6025961" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20171027-105758623, title = "Morphogen gradient reconstitution reveals Hedgehog pathway design principles", journal = "Science", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171027-105758623", id = "record", issn = "0036-8075", doi = "10.1126/science.aao0645", volume = "360", pmcid = "PMC6516753" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180214-131202804, title = "Molecular Time Sharing through Dynamic Pulsing in Single Cells", journal = "Cell Systems", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180214-131202804", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2018.01.011", volume = "6", pmcid = "PMC6070344" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180201-152120268, title = "Dynamic Ligand Discrimination in the Notch Signaling Pathway", journal = "Cell", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180201-152120268", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2018.01.002", volume = "172", pmcid = "PMC6414217" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20171114-145510367, title = "Advancing towards a global mammalian gene regulation model through single-cell analysis and synthetic biology", journal = "Current Opinion in Biomedical Engineering", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171114-145510367", id = "record", issn = "2468-4511", doi = "10.1016/j.cobme.2017.10.011", volume = "4" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20170908-115917940, title = "Combinatorial Signal Perception in the BMP Pathway", journal = "Cell", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170908-115917940", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2017.08.015", volume = "170", pmcid = "PMC5612783" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20170515-103755842, title = "Challenges and emerging directions in single-cell analysis", journal = "Genome Biology", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170515-103755842", id = "record", issn = "1474-760X", doi = "10.1186/s13059-017-1218-y", volume = "18", pmcid = "PMC5421338" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20170505-081744915, title = {What Is Your Conceptual Definition of "Cell Type" in the Context of a Mature Organism?}, journal = "Cell Systems", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170505-081744915", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2017.03.006", volume = "4" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20170707-101505335, title = "An operational view of intercellular signaling pathways", journal = "Current Opinion in Systems Biology", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170707-101505335", id = "record", issn = "2452-3100", doi = "10.1016/j.coisb.2016.12.003", volume = "1", pmcid = "PMC5665397" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20161102-141950462, title = "Synthetic recording and in situ readout of lineage information in single cells", journal = "Nature", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20161102-141950462", id = "record", issn = "0028-0836", doi = "10.1038/nature20777", volume = "541", pmcid = "PMC6487260" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20161128-114511280, title = "Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements", journal = "Cell Systems", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20161128-114511280", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2016.10.015", volume = "3", pmcid = "PMC5142829" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20161017-101223005, title = "Synthetic biology: Precision timing in a cell", journal = "Nature", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20161017-101223005", id = "record", issn = "0028-0836", doi = "10.1038/nature19478", volume = "538" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20160613-162442836, title = "Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment", journal = "Nature Immunology", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160613-162442836", id = "record", issn = "1529-2908", doi = "10.1038/ni.3514", volume = "17", pmcid = "PMC4955789" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20161021-124515838, title = "Dissecting the transcriptional regulatory network for early T-cell commitment", journal = "European Journal of Immunology", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20161021-124515838", id = "record", issn = "0014-2980", doi = "10.1002/eji.201670200", volume = "46" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20160321-104414916, title = "Central Dogma Goes Digital", journal = "Molecular Cell", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-104414916", id = "record", issn = "1097-2765", doi = "10.1016/j.molcel.2016.03.005", volume = "61" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20160216-093925349, title = "Dynamics of epigenetic regulation at the single-cell level", journal = "Science", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160216-093925349", id = "record", issn = "0036-8075", doi = "10.1126/science.aab2956", volume = "351", pmcid = "PMC5108652" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150805-144646254, title = "Combinatorial gene regulation by modulation of relative pulse timing", journal = "Nature", year = "2015", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150805-144646254", id = "record", issn = "0028-0836", doi = "10.1038/nature15710", volume = "527", pmcid = "PMC4870307" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150112-083957342, title = "Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming", journal = "Cell Stem Cell", year = "2015", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150112-083957342", id = "record", issn = "1934-5909", doi = "10.1016/j.stem.2014.11.005", volume = "16", pmcid = "PMC4291542" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150130-091522471, title = "Synthetic Biology of Multicellular Systems: New Platforms and Applications for Animal Cells and Organisms", journal = "ACS Synthetic Biology", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150130-091522471", id = "record", issn = "2161-5063", doi = "10.1021/sb500358y", volume = "3", pmcid = "PMC4476972" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150324-122948946, title = "HoxA3 Controls Notch Pathway to Repress Blood Development", journal = "Blood", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150324-122948946", id = "record", issn = "0006-4971", volume = "124" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20141201-083856186, title = "Polyphasic feedback enables tunable cellular timers", journal = "Current Biology", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141201-083856186", id = "record", issn = "0960-9822", doi = "10.1016/j.cub.2014.08.030", volume = "24", pmcid = "PMC4451454" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20141007-094944386, title = "Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states", journal = "eLife", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141007-094944386", id = "record", issn = "2050-084X", doi = "10.7554/eLife.02950", volume = "3", pmcid = "PMC4174579" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140909-172029209, title = "Pulsatile Dynamics in the Yeast Proteome", journal = "Current Biology", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140909-172029209", id = "record", issn = "0960-9822", doi = "10.1016/j.cub.2014.07.076", volume = "24", pmcid = "PMC4203654" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140911-141135837, title = "Macrophage and T-cell fate control: Insights from tracking transcription factor dynamics in single cells", journal = "Experimental Hematology", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140911-141135837", id = "record", issn = "0301-472X", doi = "10.1016/j.exphem.2014.07.054", volume = "42" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140729-074318148, title = "Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells", journal = "Molecular Cell", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140729-074318148", id = "record", issn = "1097-2765", doi = "10.1016/j.molcel.2014.06.029", volume = "55", pmcid = "PMC4104113" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140421-105002893, title = "Brf1 posttranscriptionally regulates pluripotency and differentiation responses downstream of Erk MAP kinase", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140421-105002893", id = "record", issn = "0027-8424", doi = "10.1073/pnas.1320873111", volume = "111", pmcid = "PMC4035916" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140225-111459679, title = "Realizing the potential of synthetic biology", journal = "Nature Reviews. Molecular Cell Biology", year = "2014", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140225-111459679", id = "record", issn = "1471-0072", doi = "10.1038/nrm3767", volume = "15", pmcid = "PMC9645560" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20140106-085309612, title = "Functional Roles of Pulsing in Genetic Circuits", journal = "Science", year = "2013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140106-085309612", id = "record", issn = "0036-8075", doi = "10.1126/science.1239999", volume = "342", pmcid = "PMC4100686" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20130905-110028915, title = "Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation", journal = "Science", year = "2013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130905-110028915", id = "record", issn = "0036-8075", doi = "10.1126/science.1240831", volume = "341", pmcid = "PMC3913367" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20130423-105410788, title = "Rate of environmental change determines stress response specificity", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130423-105410788", id = "record", issn = "0027-8424", doi = "10.1073/pnas.1213060110", volume = "110", pmcid = "PMC3593889" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20120217-105727788, title = "Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy", journal = "Nature Protocols", year = "2012", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120217-105727788", id = "record", issn = "1754-2189", doi = "10.1038/nprot.2011.432", volume = "7", pmcid = "PMC4161363" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20120203-102759226, title = "Following evolution of bacterial antibiotic resistance in real time", journal = "Nature Genetics", year = "2012", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120203-102759226", id = "record", issn = "1061-4036", doi = "10.1038/ng.1048", volume = "44" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20120313-120007998, title = "Pulsed Feedback Defers Cellular Differentiation", journal = "PLoS Biology", year = "2012", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120313-120007998", id = "record", issn = "1544-9173", doi = "10.1371/journal.pbio.1001252", volume = "10", pmcid = "PMC3269414" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20111116-082912789, title = "Stochastic Pulse Regulation in Bacterial Stress Response", journal = "Science", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111116-082912789", id = "record", issn = "0036-8075", doi = "10.1126/science.1208144", volume = "334", pmcid = "PMC4100694" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20111108-160027564, title = "The ePetri dish, an on-chip cell imaging platform based on subpixel perspective sweeping microscopy (SPSM)", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111108-160027564", id = "record", issn = "0027-8424", doi = "10.1073/pnas.1110681108", volume = "108", pmcid = "PMC3193234" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20111209-090440032, title = "Dynamical Consequences of Bandpass Feedback Loops in a Bacterial Phosphorelay", journal = "PLoS ONE", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111209-090440032", id = "record", issn = "1932-6203", doi = "10.1371/journal.pone.0025102", volume = "6", pmcid = "PMC3182994" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20110921-101054272, title = "Synthetic Biology: Integrated Gene Circuits", journal = "Science", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110921-101054272", id = "record", issn = "0036-8075", doi = "10.1126/science.1207084", volume = "333", pmcid = "PMC4117316" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20110715-110958369, title = "Mutual Inactivation of Notch Receptors and Ligands Facilitates Developmental Patterning", journal = "PLoS Computational Biology", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110715-110958369", id = "record", issn = "1553-734X", doi = "10.1371/journal.pcbi.1002069", volume = "7", pmcid = "PMC3111533" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20110623-101742295, title = "Mixed Messages: How Bacteria Resolve Conflicting Signals", journal = "Molecular Cell", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110623-101742295", id = "record", issn = "1097-2765", doi = "10.1016/j.molcel.2011.05.005", volume = "42", pmcid = "PMC4117311" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20101220-102123623, title = "Build life to understand it", journal = "Nature", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20101220-102123623", id = "record", issn = "0028-0836", doi = "10.1038/468889a", volume = "468", pmcid = "PMC3068207" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20101011-132711462, title = "A General Mechanism for Network-Dosage Compensation in Gene Circuits", journal = "Science", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20101011-132711462", id = "record", issn = "0036-8075", doi = "10.1126/science.1190544", volume = "329", pmcid = "PMC3138731" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20100920-101630573, title = "Functional roles for noise in genetic circuits", journal = "Nature", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100920-101630573", id = "record", issn = "0028-0836", doi = "10.1038/nature09326", volume = "467", pmcid = "PMC4100692" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20131107-140415442, title = "A synthetic three-color scaffold for monitoring genetic regulation and noise", journal = "Journal of Biological Engineering", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20131107-140415442", id = "record", issn = "1754-1611", doi = "10.1186/1754-1611-4-10", volume = "4", pmcid = "PMC2918530" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20100526-144631743, title = "Cis-interactions between Notch and Delta generate mutually exclusive signalling states", journal = "Nature", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100526-144631743", id = "record", issn = "0028-0836", doi = "10.1038/nature08959", volume = "465", pmcid = "PMC2886601" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20091125-110115141, title = "Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits", journal = "Cell", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20091125-110115141", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2009.07.046", volume = "139" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20090819-114359740, title = "Partial penetrance facilitates developmental evolution in bacteria", journal = "Nature", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090819-114359740", id = "record", issn = "0028-0836", doi = "10.1038/nature08150", volume = "460", pmcid = "PMC2716064" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144359, title = "Using movies to analyse gene circuit dynamics in single cells", journal = "Nature Reviews Microbiology", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144359", id = "record", issn = "1740-1526", doi = "10.1038/nrmicro2056", volume = "7", pmcid = "PMC2853934" } @article{https://resolver.caltech.edu/CaltechAUTHORS:DUNng08, title = "Regulatory activity revealed by dynamic correlations in gene expression noise", journal = "Nature Genetics", year = "2008", url = "https://resolver.caltech.edu/CaltechAUTHORS:DUNng08", id = "record", issn = "1061-4036", doi = "10.1038/ng.281", volume = "40", pmcid = "PMC2829635" } @article{https://resolver.caltech.edu/CaltechAUTHORS:CAInat08, title = "Frequency-modulated nuclear localization bursts coordinate gene regulation", journal = "Nature", year = "2008", url = "https://resolver.caltech.edu/CaltechAUTHORS:CAInat08", id = "record", issn = "0028-0836", doi = "10.1038/nature07292", volume = "455", pmcid = "PMC2695983" } @article{https://resolver.caltech.edu/CaltechAUTHORS:PREpnas08, title = "The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2008", url = "https://resolver.caltech.edu/CaltechAUTHORS:PREpnas08", id = "record", issn = "0027-8424", doi = "10.1073/pnas.0707293105", volume = "105", pmcid = "PMC2242688" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144474, title = "Accurate prediction of gene feedback circuit behavior from component properties", journal = "Molecular Systems Biology", year = "2007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144474", id = "record", issn = "1744-4292", doi = "10.1038/msb4100185", volume = "3", pmcid = "PMC2132446" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144189, title = "Programming gene expression with combinatorial promoters", journal = "Molecular Systems Biology", year = "2007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144189", id = "record", issn = "1744-4292", doi = "10.1038/msb4100187", volume = "3", pmcid = "PMC2132448" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20141114-080404724, title = "Tunability and Noise Dependence in Differentiation Dynamics", journal = "Science", year = "2007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141114-080404724", id = "record", issn = "0036-8075", doi = "10.1126/science.1137455", volume = "315" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-123053062, title = "A Fluctuation Method to Quantify In Vivo Fluorescence Data", journal = "Biophysical Journal", year = "2006", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-123053062", id = "record", issn = "0006-3495", doi = "10.1529/biophysj.105.073098", volume = "91", pmcid = "PMC1483091" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-150756338, title = "An excitable gene regulatory circuit induces transient cellular differentiation", journal = "Nature", year = "2006", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-150756338", id = "record", issn = "0028-0836", doi = "10.1038/nature04588", volume = "440" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150325-092313161, title = "Reconstruction of genetic circuits", journal = "Nature", year = "2005", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150325-092313161", id = "record", issn = "0028-0836", doi = "10.1038/nature04335", volume = "438" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150319-083605488, title = "Systems biology: Deviations in mating", journal = "Nature", year = "2005", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150319-083605488", id = "record", issn = "0028-0836", doi = "10.1038/437631a", volume = "437" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20141117-154819881, title = "Gene Regulation at the Single-Cell Level", journal = "Science", year = "2005", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141117-154819881", id = "record", issn = "0036-8075", doi = "10.1126/science.1106914", volume = "307" } @article{https://resolver.caltech.edu/CaltechAUTHORS:GARpnas04, title = "Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2004", url = "https://resolver.caltech.edu/CaltechAUTHORS:GARpnas04", id = "record", issn = "0027-8424", doi = "10.1073/pnas.0307095101", volume = "101", pmcid = "PMC503725" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20150408-095048891, title = "Dynamics of the p53-Mdm2 feedback loop in individual cells", journal = "Nature Genetics", year = "2004", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150408-095048891", id = "record", issn = "1061-4036", doi = "10.1038/ng1293", volume = "36" } @article{https://resolver.caltech.edu/CaltechAUTHORS:OVEpnas03, title = "The presence of p53 mutations in human osteosarcomas correlates with high levels of genomic instability", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2003", url = "https://resolver.caltech.edu/CaltechAUTHORS:OVEpnas03", id = "record", issn = "0027-8424", doi = "10.1073/pnas.1934852100", volume = "100", pmcid = "PMC208795" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-124412749, title = "Negative Autoregulation Speeds the Response Times of Transcription Networks", journal = "Journal of Molecular Biology", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-124412749", id = "record", issn = "0022-2836", doi = "10.1016/s0022-2836(02)00994-4", volume = "323" } @article{https://resolver.caltech.edu/CaltechAUTHORS:SWApnas02, title = "Intrinsic and extrinsic contributions to stochasticity in gene expression", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:SWApnas02", id = "record", issn = "0027-8424", doi = "10.1073/pnas.162041399", volume = "99", pmcid = "PMC130539" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-125210088, title = "Stochastic Gene Expression in a Single Cell", journal = "Science", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-125210088", id = "record", issn = "0036-8075", doi = "10.1126/science.1070919", volume = "297" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-131623929, title = "A synthetic oscillatory network of transcriptional regulators", journal = "Nature", year = "2000", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-131623929", id = "record", issn = "0028-0836", doi = "10.1038/35002125", volume = "403" } @article{https://resolver.caltech.edu/CaltechAUTHORS:ELOjbact99, title = "Protein Mobility in the Cytoplasm of Escherichia coli", journal = "Journal of Bacteriology", year = "1999", url = "https://resolver.caltech.edu/CaltechAUTHORS:ELOjbact99", id = "record", issn = "0021-9193", volume = "181", pmcid = "PMC103549" } @article{https://resolver.caltech.edu/CaltechAUTHORS:SURpnas98, title = "Chromophore-assisted light inactivation and self-organization of microtubules and motors", journal = "Proceedings of the National Academy of Sciences of the United States of America", year = "1998", url = "https://resolver.caltech.edu/CaltechAUTHORS:SURpnas98", id = "record", issn = "0027-8424", volume = "95", pmcid = "PMC22482" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200428-133426011, title = "Photoactivation turns green fluorescent protein red", journal = "Current Biology", year = "1997", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-133426011", id = "record", issn = "0960-9822", doi = "10.1016/s0960-9822(06)00342-3", volume = "7" } @article{https://resolver.caltech.edu/CaltechAUTHORS:BOUprl95, title = "Spiral Defects in Motility Assays: A Measure of Motor Protein Force", journal = "Physical Review Letters", year = "1995", url = "https://resolver.caltech.edu/CaltechAUTHORS:BOUprl95", id = "record", issn = "0031-9007", doi = "10.1103/PhysRevLett.75.176", volume = "75" }