Ismagilov, Rustem

Combined from CaltechAUTHORS

• Wu-Woods, Natalie J. and Barlow, Jacob T., et el. (2023) Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples; Nature Methods; 10.1038/s41592-023-02025-4
• Ji, Jenny and Viloria Winnett, Alexander, et el. (2023) Index cases first identified by nasal-swab rapid COVID-19 tests had more transmission to household contacts than cases identified by other test types; PLOS ONE; Vol. 18; No. 10; e0292389; PMCID PMC10553276; 10.1371/journal.pone.0292389
• Poceviciute, Roberta and Bogatyrev, Said R., et el. (2023) Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa; npj Biofilms and Microbiomes; Vol. 9; 64; PMCID PMC10485000; 10.1038/s41522-023-00423-2
• Winnett, Alexander Viloria and Akana, Reid, et el. (2023) Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types; Microbiology Spectrum; Vol. 11; No. 4; e01295-23; PMCID PMC10434058; 10.1128/spectrum.01295-23
• Ji, Jenny and Winnett, Alexander Viloria, et el. (2023) Index Cases First Identified by Nasal-Swab Rapid COVID-19 Tests Had More Transmission to Household Contacts Than Cases Identified by Other Test Types; 10.1101/2023.03.09.23286855
• Winnett, Alexander Viloria and Akana, Reid, et el. (2023) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods; PNAS Nexus; Vol. 2; No. 3; pgad033; PMCID PMC10013338; 10.1093/pnasnexus/pgad033
• Carter, Alyssa M. and Winnett, Alexander Viloria, et el. (2023) Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips; Open Forum Infectious Diseases; Vol. 10; No. 1; Art. No. ofac701; PMCID PMC9887260; 10.1093/ofid/ofac701
• Earley, Zachary M. and Lisicka, Wioletta, et el. (2023) GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology; Immunity; Vol. 56; No. 1; 43-57.e10; 10.1016/j.immuni.2022.12.009
• Winnett, Alexander Viloria and Porter, Michael K., et el. (2022) Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking; Microbiology Spectrum; Vol. 10; No. 6; e03873-22; PMCID PMC9769854; 10.1128/spectrum.03873-22
• Winnett, Alexander Viloria and Akana, Reid, et el. (2022) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods; 10.1101/2022.07.13.22277113
• Winnett, Alexander Viloria and Akana, Reid, et el. (2022) Why Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and Infectious Individuals; 10.1101/2022.07.13.22277513
• Poceviciute, Roberta and Bogatyrev, Said R., et el. (2022) Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa; 10.1101/2022.06.17.496478
• Mondragón-Palomino, Octavio and Poceviciute, Roberta, et el. (2022) Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa; Proceedings of the National Academy of Sciences; Vol. 119; No. 18; Art. No. e2118483119; PMCID PMC9171773; 10.1073/pnas.2118483119
• Winnett, Alexander Viloria and Porter, Michael K., et el. (2022) Morning SARS-CoV-2 testing yields better detection of infection due to higher viral loads in saliva and nasal swabs upon waking; 10.1101/2022.03.02.22271724
• Savela, Emily S. and Winnett, Alexander Viloria, et el. (2022) Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection; Journal of Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID PMC8849374; 10.1128/JCM.01785-21
• Arrastia, Mary V. and Jachowicz, Joanna W., et el. (2022) Single-cell measurement of higher-order 3D genome organization with scSPRITE; Nature Biotechnology; Vol. 40; No. 1; 64-73; 10.1038/s41587-021-00998-1
• Barlow, Jacob T. and Leite, Gabriela, et el. (2021) Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome; Microbiome; Vol. 9; Art. No. 214; PMCID PMC8561862; 10.1186/s40168-021-01162-2
• Ji, Jenny and Winnett, Alexander, et el. (2021) Modulating Factors of Household Transmission of SARS‑CoV‑2 in a Community-Based Study; American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5; 313; 10.4269/ajtmh.abstract2021
• Mondragón-Palomino, Octavio and Poceviciute, Roberta, et el. (2021) 3D imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa; 10.1101/2021.10.07.463215
• Olson, Christine A. and Iñiguez, Alonso J., et el. (2021) Alterations in the gut microbiota contribute to cognitive impairment induced by the ketogenic diet and hypoxia; Cell Host and Microbe; Vol. 29; No. 9; 1378-1392; PMCID PMC8429275; 10.1016/j.chom.2021.07.004
• Wu, Wei-Li and Adame, Mark D., et el. (2021) Microbiota regulate social behaviour via stress response neurons in the brain; Nature; Vol. 595; No. 7867; 409-414; PMCID PMC8346519; 10.1038/s41586-021-03669-y
• Winnett, Alexander and Cooper, Matthew M., et el. (2020) SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans; PMCID PMC7743094; 10.1101/2020.12.09.20239467
• Khazaei, Tahmineh and Williams, Rory L., et el. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community; Science Advances; Vol. 6; No. 33; Art. No. eaba0353; PMCID PMC7423363; 10.1126/sciadv.aba0353
• Barlow, Jacob T. and Bogatyrev, Said R., et el. (2020) A Quantitative Sequencing Framework for Absolute Abundance Measurements of Mucosal and Lumenal Microbial Communities; Nature Communications; Vol. 11; Art. No. 2590; PMCID PMC7244552; 10.1038/s41467-020-16224-6
• Jue, Erik and Ismagilov, Rustem F. (2020) Commercial stocks of SARS-CoV-2 RNA may report low concentration values, leading to artificially increased apparent sensitivity of diagnostic assays; 10.1101/2020.04.28.20077602
• Yu, Ziqing and Lyu, Weiyuan, et el. (2020) Self-partitioning SlipChip for slip-induced droplet formation and human papillomavirus viral load quantification with digital LAMP; Biosensors and Bioelectronics; Vol. 155; Art. No. 112107; 10.1016/j.bios.2020.112107
• Rolando, Justin C. and Jue, Erik, et el. (2020) Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification; Nucleic Acids Research; Vol. 48; No. 7; Art. No. e42; PMCID PMC7144905; 10.1093/nar/gkaa099
• Faber, Katherine T. and Kornfield, Julia A., et el. (2020) Freeze-cast ceramic membrane for size based filtration
• Savela, Emily S. and Schoepp, Nathan G., et el. (2020) Surfactant-enhanced DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic susceptibility testing of Neisseria gonorrhoeae; PLoS Biology; Vol. 18; No. 3; Art. No. 3000651; PMCID PMC7081974; 10.1371/journal.pbio.3000651
• Schoepp, Nathan G. and Liaw, Eric J., et el. (2020) Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae; PLoS Biology; Vol. 18; No. 3; Art. No. 3000652; PMCID PMC7081982; 10.1371/journal.pbio.3000652
• Khazaei, Tahmineh and Williams, Rory L., et el. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome community; 10.1101/2020.02.28.968941
• Bogatyrev, Said R. and Rolando, Justin C., et el. (2020) Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine; Microbiome; Vol. 8; Art. No. 19; PMCID PMC7017497; 10.1186/s40168-020-0785-4
• Jue, Erik and Witters, Daan, et el. (2020) Two-phase wash to solve the ubiquitous contaminant-carryover problem in commercial nucleic-acid extraction kits; Scientific Reports; Vol. 10; Art. No. 1940; PMCID PMC7004994; 10.1038/s41598-020-58586-3
• Bogatyrev, Said R. and Ismagilov, Rustem F. (2020) Quantitative microbiome profiling in lumenal and tissue samples with broad coverage and dynamic range via a single-step 16S rRNA gene DNA copy quantification and amplicon barcoding; 10.1101/2020.01.22.914705
• Zhukov, Dmitriy V. and Khorosheva, Eugenia M., et el. (2019) Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale; Lab on a Chip; Vol. 19; No. 19; 3200-3211; 10.1039/c9lc00541b
• Porter, Michael K. and Steinberg, Asher Preska, et el. (2019) Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation; Soft Matter; Vol. 15; No. 35; 7071-7079; 10.1039/c9sm00791a
• Yu, Mengchao and Chen, Xiaoying, et el. (2019) Multistep SlipChip for the Generation of Serial Dilution Nanoliter Arrays and Hepatitis B Viral Load Quantification by Digital Loop Mediated Isothermal Amplification; Analytical Chemistry; Vol. 91; No. 14; 8751-8755; 10.1021/acs.analchem.9b01270
• Preska Steinberg, Asher and Wang, Zhen-Gang, et el. (2019) Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan Mechanism; Biomacromolecules; Vol. 20; No. 7; 2675-2683; 10.1021/acs.biomac.9b00442
• Poceviciute, Roberta and Ismagilov, Rustem F. (2019) Human-gut-microbiome on a chip; Nature Biomedical Engineering; Vol. 3; No. 7; 500-501; 10.1038/s41551-019-0425-0
• Savela, Emily and Schoepp, Nathan G., et el. (2019) Cell Envelope Damage of N. gonorrhoeae after 15-min Beta-Lactam Exposure Enables Rapid Antimicrobial Susceptibility Testing; Sexually Transmitted Infections; Vol. 95; No. S1; A291; 10.1136/sextrans-2019-sti.729
• Preska Steinberg, Asher and Datta, Sujit S., et el. (2019) High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine; eLife; Vol. 8; Art. No. e40387; PMCID PMC6342521; 10.7554/eLife.40387
• Rolando, Justin C. and Jue, Erik, et el. (2019) Real-Time, Digital LAMP with Commercial Microfluidic Chips Reveals the Interplay of Efficiency, Speed, and Background Amplification as a Function of Reaction Temperature and Time; Analytical Chemistry; Vol. 91; No. 1; 1034-1042; PMCID PMC6322147; 10.1021/acs.analchem.8b04324
• Khazaei, Tahmineh and Barlow, Jacob T., et el. (2018) RNA markers enable phenotypic test of antibiotic susceptibility in Neisseria gonorrhoeae after 10 minutes of ciprofloxacin exposure; Scientific Reports; Vol. 8; Art. No. 11606; PMCID PMC6072703; 10.1038/s41598-018-29707-w
• Schoepp, Nathan G. and Schlappi, Travis S., et el. (2017) Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples; Science Translational Medicine; Vol. 9; No. 410; Art. No. eaal3693; PMCID PMC6765391; 10.1126/scitranslmed.aal3693
• Pompano, Rebecca R. and Chiang, Andrew H., et el. (2017) Conceptual and Experimental Tools to Understand Spatial Effects and Transport Phenomena in Nonlinear Biochemical Networks Illustrated with Patchy Switching; Annual Review of Biochemistry; Vol. 86; 333-356; PMCID PMC10852032; 10.1146/annurev-biochem-060815-014207
• Selck, David A. and Ismagilov, Rustem F. (2016) Instrument for Real-Time Digital Nucleic Acid Amplification on Custom Microfluidic Devices; PLOS ONE; Vol. 11; No. 10; Art. No. e0163060; PMCID PMC5070811; 10.1371/journal.pone.0163060
• Schoepp, Nathan G. and Khorosheva, Eugenia M., et el. (2016) Digital Quantification of DNA Replication and Chromosome Segregation Enables Determination of Antimicrobial Susceptibility after only 15 Minutes of Antibiotic Exposure; Angewandte Chemie International Edition in English; Vol. 55; No. 33; 9557-9561; PMCID PMC5215780; 10.1002/ange.201602763
• Schlappi, Travis S. and McCalla, Stephanie E., et el. (2016) Flow-through Capture and in Situ Amplification Can Enable Rapid Detection of a Few Single Molecules of Nucleic Acids from Several Milliliters of Solution; Analytical Chemistry; Vol. 88; No. 15; 7647-7653; 10.1021/acs.analchem.6b01485
• Datta, Sujit S. and Preska Steinberg, Asher, et el. (2016) Polymers in the gut compress the colonic mucus hydrogel; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 26; 7041-7046; PMCID PMC4932961; 10.1073/pnas.1602789113
• Jue, Erik and Schoepp, Nathan G., et el. (2016) Evaluating 3D printing to solve the sample-to-device interface for LRS and POC diagnostics: example of an interlock meter-mix device for metering and lysing clinical urine samples; Lab on a Chip; Vol. 16; No. 10; 1852-1860; 10.1039/C6LC00292G
• Jiang, Cheng-Ying and Dong, Libing, et el. (2016) High throughput Single-cell Cultivation on Microfluidic Streak Plates; Applied and Environmental Microbiology; Vol. 82; No. 7; 2210-2218; PMCID PMC4807504; 10.1128/AEM.03588-15
• Rodriguez-Manzano, Jesus and Karymov, Mikhail A., et el. (2016) Reading Out Single-Molecule Digital RNA and DNA Isothermal Amplification in Nanoliter Volumes with Unmodified Camera Phones; ACS Nano; Vol. 10; No. 3; 3102-3113; PMCID PMC4819493; 10.1021/acsnano.5b07338
• Khorosheva, Eugenia M. and Karymov, Mikhail A., et el. (2016) Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP; Nucleic Acids Research; Vol. 44; No. 2; Art. No. E10; PMCID PMC4737171; 10.1093/nar/gkv877
• Yeon, Ju Hun and Chan, Karen Y. T., et el. (2015) A biochemical network can control formation of a synthetic material by sensing numerous specific stimuli; Scientific Reports; Vol. 5; No. 5; Art. No. 10274; PMCID PMC4432564; 10.1038/srep10274
• Yano, Jessica M. and Yu, Kristie, et el. (2015) Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis; Cell; Vol. 161; No. 2; 264-276; PMCID PMC4393509; 10.1016/j.cell.2015.02.047
• Begolo, Stefano and Zhukov, Dmitriy V., et el. (2014) The pumping lid: investigating multi-material 3D printing for equipment-free, programmable generation of positive and negative pressures for microfluidic applications; Lab on a Chip; Vol. 14; No. 24; 4616-4628; PMCID PMC10773560; 10.1039/C4LC00910J
• Kelley, Shana O. and Mirkin, Chad A., et el. (2014) Advancing the speed, sensitivity and accuracy of biomolecular detection using multi-length-scale engineering; Nature Nanotechnology; Vol. 9; No. 12; 969-980; PMCID PMC4472305; 10.1038/NNANO.2014.261
• Pickard, Joseph M. and Maurice, Corinne F., et el. (2014) Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness; Nature; Vol. 514; No. 7524; 638-641; PMCID PMC4214913; 10.1038/nature13823
• Ge, Shencheng and Liu, Weishan, et el. (2014) Digital, Ultrasensitive, End-Point Protein Measurements with Large Dynamic Range via Brownian Trapping with Drift; Journal of the American Chemical Society; Vol. 136; No. 42; 14662-14665; 10.1021/ja507849b
• Witters, Daan and Sun, Bing, et el. (2014) Digital biology and chemistry; Lab on a Chip; Vol. 14; No. 17; 3225-3232; 10.1039/c4lc00248b
• Ma, Liang and Datta, Sujit S., et el. (2014) Individually addressable arrays of replica microbial cultures enabled by splitting SlipChips; Integrative Biology; Vol. 6; No. 8; 796-805; PMCID PMC4131746; 10.1039/c4ib00109e
• Sun, Bing and Rodriguez-Manzano, Jesus, et el. (2014) Measuring Fate and Rate of Single-Molecule Competition of Amplification and Restriction Digestion, and Its Use for Rapid Genotyping Tested with Hepatitis C Viral RNA; Angewandte Chemie International Edition; Vol. 53; No. 31; 8088-8092; PMCID PMC4116457; 10.1002/ange.201403035
• Ma, Liang and Kim, Jungwoo, et el. (2014) Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 27; 9768-9773; PMCID PMC4103313; 10.1073/pnas.1404753111
• Selck, David A. and Karymov, Mikhail A., et el. (2013) Increased Robustness of Single-Molecule Counting with Microfluidics, Digital Isothermal Amplification, and a Mobile Phone versus Real-Time Kinetic Measurements; Analytical Chemistry; Vol. 85; No. 22; 11129-11136; PMCID PMC3924768; 10.1021/ac4030413
• Huynh, Toan and Sun, Bing, et el. (2013) Chemical Analog-to-Digital Signal Conversion Based on Robust Threshold Chemistry and Its Evaluation in the Context of Microfluidics-Based Quantitative Assays; Journal of the American Chemical Society; Vol. 135; No. 39; 14775-14783; PMCID PMC3860884; 10.1021/ja4062882
• Begolo, Stefano and Shen, Feng, et el. (2013) A microfluidic device for dry sample preservation in remote settings; Lab on a Chip; Vol. 13; No. 22; 4331-4342; PMCID PMC3851311; 10.1039/c3lc50747e
• Mahdavi, Alborz and Segall-Shapiro, Thomas H., et el. (2013) A Genetically Encoded AND Gate for Cell-Targeted Metabolic Labeling of Proteins; Journal of the American Chemical Society; Vol. 135; No. 8; 2979-2982; PMCID PMC3620012; 10.1021/ja400448f
• Sun, Bing and Shen, Feng, et el. (2013) Mechanistic Evaluation of the Pros and Cons of Digital RT-LAMP for HIV-1 Viral Load Quantification on a Microfluidic Device and Improved Efficiency via a Two-Step Digital Protocol; Analytical Chemistry; Vol. 85; No. 3; 1540-1546; PMCID PMC3578705; 10.1021/ac3037206
• Selck, David A. and Karymov, Mikhail A., et el. (2013) Single-molecule counting with microfluidics, digital isothermal amplification, and a mobile phone is more robust than kinetic based real-time quantification; ISBN 978-0-9798064-6-9; 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2013); 1129-1131
• Begolo, Stefano and Shen, Feng, et el. (2013) Dry sample preservation using a SlipChip; ISBN 978-0-9798064-6-9; 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2013); 1998-2000
• Pompano, Rebecca R. and Platt, Carol E., et el. (2012) Control of Initiation, Rate, and Routing of Spontaneous Capillary-Driven Flow of Liquid Droplets through Microfluidic Channels on SlipChip; Langmuir; Vol. 28; No. 3; 1931-1941; PMCID PMC3271727; 10.1021/la204399m
• Shen, Feng and Sun, Bing, et el. (2011) Multiplexed Quantification of Nucleic Acids with Large Dynamic Range Using Multivolume Digital RT-PCR on a Rotational SlipChip Tested with HIV and Hepatitis C Viral Load; Journal of the American Chemical Society; Vol. 133; No. 44; 17705-17712; PMCID PMC3216675; 10.1021/ja2060116
• Kreutz, Jason E. and Munson, Todd, et el. (2011) Theoretical Design and Analysis of Multivolume Digital Assays with Wide Dynamic Range Validated Experimentally with Microfluidic Digital PCR; Analytical Chemistry; Vol. 83; No. 21; 8158-8168; PMCID PMC3216679; 10.1021/ac201658s
• Nichols, Kevin P. and Pompano, Rebecca R., et el. (2011) Toward Mechanistic Understanding of Nuclear Reprocessing Chemistries by Quantifying Lanthanide Solvent Extraction Kinetics via Microfluidics with Constant Interfacial Area and Rapid Mixing; Journal of the American Chemical Society; Vol. 133; No. 39; 15721-9; 10.1021/ja206020u
• Bodnarchuk, Maryna I. and Li, Liang, et el. (2011) Three-Dimensional Nanocrystal Superlattices Grown in Nanoliter Microfluidic Plugs; Journal of the American Chemical Society; Vol. 133; No. 23; 8956-8960; 10.1021/ja201129n
• Shen, Feng and Davydova, Elena K., et el. (2011) Digital Isothermal Quantification of Nucleic Acids via Simultaneous Chemical Initiation of Recombinase Polymerase Amplification Reactions on SlipChip; Analytical Chemistry; Vol. 83; No. 9; 3533-3540; PMCID PMC3101872; 10.1021/ac200247e
• Kim, Hyun Jung and Du, Wenbin, et el. (2011) Complex Function by Design Using Spatially Pre-Structured Synthetic Microbial Communities: Degradation of Pentachlorophenol in the Presence of Hg(II); Integrative Biology; Vol. 3; No. 2; 126-133; PMCID PMC3005148; 10.1039/C0IB00019A
• Pompano, Rebecca R. and Liu, Weishan, et el. (2011) Microfluidics Using Spatially Defined Arrays of Droplets in One, Two, and Three Dimensions; Annual Review of Analytical Chemistry; Vol. 4; 59-81; 10.1146/annurev.anchem.012809.102303
• Shen, Feng and Du, Wenbin, et el. (2010) Digital PCR on a SlipChip; Lab on a Chip; Vol. 10; No. 20; 2666-2672; PMCID PMC2948063; 10.1039/c004521g
• Meier, Matthias and Lucchetta, Elena M., et el. (2010) Chemical Stimulation of the Arabidopsis thaliana Root using Multi-Laminar Flow on a Microfluidic Chip; Lab on a Chip; Vol. 10; No. 16; 2147-2153; PMCID PMC2912432; 10.1039/c004629a
• Li, Liang and Karymov, Mikhail A., et el. (2010) Dead-end filling of SlipChip evaluated theoretically and experimentally as a function of the surface chemistry and the gap size between the plates for lubricated and dry SlipChips; Langmuir; Vol. 26; No. 14; 12465-12471; PMCID PMC2923639; 10.1021/la101460z
• Hom, Robert A. and Chang, Pei-Yun, et el. (2010) Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain; Journal of Molecular Biology; Vol. 400; No. 2; 145-154; PMCID PMC3204800; 10.1016/j.jmb.2010.04.067
• Shen, Feng and Du, Wenbin, et el. (2010) Nanoliter Multiplex PCR Arrays on a SlipChip; Analytical Chemistry; Vol. 82; No. 11; 4606-4612; PMCID PMC2916686; 10.1021/ac1007249
• Li, Liang and Fu, Qiang, et el. (2010) A Plug-Based Microfluidic System for Dispensing Lipidic Cubic Phase (LCP) Material Validated by Crystallizing Membrane Proteins in Lipidic Mesophases; Microfluidics and Nanofluidics; Vol. 8; No. 6; 789-798; PMCID PMC2868346; 10.1007/s10404-009-0512-8
• Liu, Weishan and Chen, Delai L., et el. (2010) SlipChip for immunoassays in nanoliter volumes; Analytical Chemistry; Vol. 82; No. 8; 3276-3282; PMCID PMC2885842; 10.1021/ac100044c
• Kreutz, Jason E. and Shukhaev, Anton, et el. (2010) Evolution of catalysts directed by genetic algorithms in a plug-based microfluidic device tested with oxidation of methane by oxygen; Journal of the American Chemical Society; Vol. 132; No. 9; 3128-3132; PMCID PMC2861856; 10.1021/ja909853x
• Vincent, Meghan E. and Liu, Weishan, et el. (2010) Microfluidic stochastic confinement enhances analysis of rare cells by isolating cells and creating high density environments for control of diffusible signals; Chemical Society Reviews; Vol. 39; No. 3; 974-984; PMCID PMC2829723; 10.1039/B917851A
• Li, Liang and Du, Wenbin, et el. (2010) User-Loaded SlipChip for Equipment-Free Multiplexed Nanoliter-Scale Experiments; Journal of the American Chemical Society; Vol. 132; No. 1; 106-111; PMCID PMC2802657; 10.1021/ja908555n
• Li, Liang and Du, Wenbin, et el. (2010) Multiparameter Screening on SlipChip Used for Nanoliter Protein Crystallization Combining Free Interface Diffusion and Microbatch Methods; Journal of the American Chemical Society; Vol. 132; No. 1; 112-119; PMCID PMC2805062; 10.1021/ja908558m
• Li, Liang and Ismagilov, Rustem F. (2010) Protein Crystallization using Microfluidic Technologies Based on Valves, Droplets, and SlipChip; Annual Review of Biophysics; Vol. 39; 139-158; 10.1146/annurev.biophys.050708.133630
• Lucchetta, Elena M. and Carthew, Richard W., et el. (2009) The Endo-siRNA Pathway Is Essential for Robust Development of the Drosophila Embryo; PLoS ONE; Vol. 4; No. 10; e7576; PMCID PMC2761733; 10.1371/journal.pone.0007576
• Shen, Feng and Pompano, Rebecca R., et el. (2009) Confinement Regulates Complex Biochemical Networks: Initiation of Blood Clotting by "Diffusion Acting"; Biophysical Journal; Vol. 97; No. 8; 2137-2145; PMCID PMC2764071; 10.1016/j.bpj.2009.08.004
• Ponomarenko, Nina S. and Li, Liang, et el. (2009) Structural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center; Biochimica et Biophysica Acta - Biomembranes; Vol. 1788; 1822-1831; PMCID PMC2752317; 10.1016/j.bbamem.2009.06.006
• Du, Wenbin and Li, Liang, et el. (2009) SlipChip; Lab on a Chip; Vol. 9; No. 16; 2286-2292; PMCID PMC2719824; 10.1039/B908978K
• Liu, Weishan and Kim, Hyun Jung, et el. (2009) Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement; Lab on a Chip; Vol. 9; No. 15; 2153-2162; PMCID PMC2719823; 10.1039/b904958d
• Chen, Delai and Du, Wenbin, et el. (2009) Using TIRF microscopy to quantify and confirm efficient mass transfer at the substrate surface of the chemistrode; New Journal of Physics; Vol. 11; No. 7; Art. No. 075017; PMCID PMC2757094; 10.1088/1367-2630/11/7/075017
• Kreutz, Jason E. and Li, Liang, et el. (2009) Laterally Mobile, Functionalized Self-Assembled Monolayers at the Fluorous-Aqueous Interface in a Plug-Based Microfluidic System: Characterization and Testing with Membrane Protein Crystallization; Journal of the American Chemical Society; Vol. 131; No. 17; 6042-6043; PMCID PMC2741014; 10.1021/ja808697e
• Liu, Ying and Ismagilov, Rustem F. (2009) Dynamics of Coalescence of Plugs with a Hydrophilic Wetting Layer Induced by Flow in a Microfluidic Chemistrode; Langmuir; Vol. 25; No. 5; 2854-2859; 10.1021/la803518b
• Meier, Matthias and Kennedy-Darling, Julia, et el. (2009) Plug-Based Microfluidics with Defined Surface Chemistry to Miniaturize and Control Aggregation of Amyloidogenic Peptides; Angewandte Chemie International Edition; Vol. 48; No. 8; 1487-1489; PMCID PMC2675571; 10.1002/anie.200805225
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• Ismagilov, Rustem F. and Maharbiz, Michel M. (2007) Can we build synthetic, multicellular systems by controlling developmental signaling in space and time?; Current Opinion in Chemical Biology; Vol. 11; No. 6; 604-611; PMCID PMC2203304; 10.1016/j.cbpa.2007.10.003
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• Song, Helen and Ismagilov, Rustem F. (2003) Millisecond kinetics on a microfluidic chip using nanoliters of reagents; Journal of the American Chemical Society; Vol. 125; No. 47; 14613-14619; PMCID PMC1769313; 10.1021/ja0354566
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• Chabinyc, Michael L. and Holmlin, R. Erik, et el. (2003) Molecular electronics with a metal-insulator-metal junction based on self-assembled monolayers; ISBN 9780841237827; Molecules as Components of Electronic Devices; 16-35; 10.1021/bk-2003-0844.ch003
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• Ismagilov, Rustem F. and Ng, Jessamine M. K., et el. (2001) Microfluidic arrays of fluid-fluid diffusional contacts as detection elements and combinatorial tools; Analytical Chemistry; Vol. 73; No. 21; 5207-5213; 10.1021/ac010502a
• Ismagilov, Rustem F. and Rosmarin, David, et el. (2001) Pressure-driven laminar flow in tangential microchannels: an elastomeric microfluidic switch; Analytical Chemistry; Vol. 73; No. 19; 4682-4687; 10.1021/ac010374q
• Ismagilov, Rustem F. and Rosmarin, David, et el. (2001) Competition of intrinsic and topographically imposed patterns in Benard-Marangoni convection; Applied Physics Letters; Vol. 79; No. 3; 439-441; 10.1063/1.1384473
• Nelsen, Stephen F. and Trieber, Dwight A., II, et el. (2001) Solvent effects on charge transfer bands of nitrogen-centered intervalence compounds; Journal of the American Chemical Society; Vol. 123; No. 24; 5684-5694; 10.1021/ja003436n
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• Hong, Sun Hee and Evans, Dennis H., et el. (2000) Evidence for a two-step electron-transfer process in the electrode reactions of tetraisopropylhydrazine, tetracyclohexylhydrazine and their radical cation salts; Journal of Electroanalytical Chemistry; Vol. 486; No. 1; 75-84; 10.1016/S0022-0728(00)00137-6
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• Deng, Tao and Arias, Francisco, et el. (2000) Fabrication of metallic microstructures using exposed, developed silver halide-based photographic film; Analytical Chemistry; Vol. 72; No. 4; 645-651; 10.1021/ac991010p
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• Nelsen, Stephen F. and Ismagilov, Rustem F. (1999) Ion pairing effects on bis(hydrazine) intervalence radical cations; Journal of Physical Chemistry A; Vol. 103; No. 27; 5373-5378; 10.1021/jp991294h
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• Nelsen, Stephen F. and Ismagilov, Rustem F., et el. (1998) Comparison of the singlet, triplet energy gap of a symmetrical diradical dication with ET parameters derived from its optical spectrum; Journal of the American Chemical Society; Vol. 120; No. 9; 2200-2201; 10.1021/ja9706615
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• Nelsen, Stephen F. and Ismagilov, Rustem F., et el. (1997) Charge-localized p-phenylenedihydrazine radical cations: ESR and optical studies of intramolecular electron transfer rates; Journal of the American Chemical Society; Vol. 119; No. 42; 10213-10222; 10.1021/ja9720321
• Nelsen, Stephen F. and Klein, Susan J., et el. (1997) σ,π Interaction in Halogen-Substituted Biadamantylidene Radical Cations; Journal of Organic Chemistry; Vol. 62; No. 19; 6539-6546; 10.1021/jo970252r
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