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- Wannier, Timothy M. and Moore, Matthew M., et el. (2015) Computational Design of the β-Sheet Surface of a Red Fluorescent Protein Allows Control of Protein Oligomerization; PLoS ONE; Vol. 10; No. 6; Art. No. e0130582; PMCID PMC4468108; 10.1371/journal.pone.0130582
- Wannier, Timothy M. and Mayo, Stephen L. (2014) The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions; Protein Science; Vol. 23; No. 8; 1148-1153; PMCID PMC4116662; 10.1002/pro.2498
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- Chitsaz, Mohsen and Mayo, Stephen L. (2013) GRID: A high-resolution protein structure refinement algorithm; Journal of Computational Chemistry; Vol. 34; No. 6; 445-450; 10.1002/jcc.23151
- Moore, Matthew M. and Oteng-Pabi, Samuel K., et el. (2012) Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design; PLoS ONE; Vol. 7; No. 12; Art. No. e52463; PMCID PMC3527499; 10.1371/journal.pone.0052463
- Chitsaz, Mohsen and Mayo, Stephen (2012) Replica Exchange Monte Carlo GRID: A novel high-resolution refinement algorithm; Protein Science; Vol. 21; No. S1; 139
- Cahn, Jackson and Padilla Araujo, Bernardo Sosa, et el. (2012) Multi-State Computational Design and Experimental Characterization of Triosephosphate Isomerase Flexible Hinges; Protein Science; Vol. 21; No. S1; 132
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- Berry, Alexandria and Privett, Heidi, et el. (2012) Designing Conformational Control of Human Tissue Transglutaminase for Applications in Huntington's Disease Research; Protein Science; Vol. 21; No. S1; 153
- Padilla Araujo, Bernardo Sosa and Miller, Thomas, et el. (2012) In Silico Screening of Computational Enzyme Designs; Protein Science; Vol. 21; No. S1; 132
- Alvizo, Oscar and Mittal, Seema, et el. (2012) Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease; Protein Science; Vol. 21; No. 7; 1029-1041; PMCID PMC3403440; 10.1002/pro.2086
- Chen, Mike M. Y. and Snow, Christopher D., et el. (2012) Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes; Protein Engineering, Design and Selection; Vol. 25; No. 4; 171-178; 10.1093/protein/gzs004
- Privett, Heidi K. and Kiss, Gert, et el. (2012) Iterative approach to computational enzyme design; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 10; 3790-3795; PMCID PMC3309769; 10.1073/pnas.1118082108
- Lee, Toni M. and Farrow, Mary F., et el. (2011) A structural study of Hypocrea jecorina Cel5A; Protein Science; Vol. 20; No. 11; 1935-1940; PMCID PMC3267957; 10.1002/pro.730
- Keeffe, Jennifer R. and Gnanapragasam, Priyanthi N. P., et el. (2011) Designed oligomers of cyanovirin-N show enhanced HIV neutralization; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 34; 14079-14084; PMCID PMC3161612; 10.1073/pnas.1108777108
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- Hemmert, Andrew C. and Otto, Tamara C., et el. (2011) Nerve Agent Hydrolysis Activity Designed into a Human Drug Metabolism Enzyme; PLoS ONE; Vol. 6; No. 3; Art. No. e17441; PMCID PMC3060870; 10.1371/journal.pone.0017441
- Chica, Roberto A. and Moore, Matthew M., et el. (2010) Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 47; 20257-20262; PMCID PMC2996648; 10.1073/pnas.1013910107
- Allen, Benjamin D. and Nisthal, Alex, et el. (2010) Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 46; 19838-19843; PMCID PMC2993350; 10.1073/pnas.1012985107
- Allen, Benjamin D. and Mayo, Stephen L. (2010) An efficient algorithm for multistate protein design based on FASTER; Journal of Computational Chemistry; Vol. 31; No. 5; 904-916; 10.1002/jcc.21375
- Crowhurst, Karin A. and Mayo, Stephen L. (2008) NMR-detected conformational exchange observed in a computationally designed variant of protein Gβ1; Protein Engineering, Design and Selection; Vol. 21; No. 9; 577-587; 10.1093/protein/gzn035
- Alvizo, Oscar and Mayo, Stephen L. (2008) Evaluating and optimizing computational protein design force fields using fixed composition-based negative design; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 34; 12242-12247; PMCID PMC2516967; 10.1073/pnas.0805858105
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- Lassila, Jonathan Kyle and Keeffe, Jennifer R., et el. (2007) Exhaustive mutagenesis of six secondary active-site residues in Escherichia coli chorismate mutase shows the importance of hydrophobic side chains and a helix N-capping position for stability and catalysis; Biochemistry; Vol. 46; No. 23; 6883-6891; 10.1021/bi700215x
- Choi, Eun Jung and Mao, Jessica, et el. (2007) Computational design and biochemical characterization of maize nonspecific lipid transfer protein variants for biosensor applications; Protein Science; Vol. 16; No. 4; 582-588; PMCID PMC2203350; 10.1110/ps.062607007
- Zong, Chenghang and Wilson, Corey J., et el. (2007) Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 9; 3159-3164; PMCID PMC1805512; 10.1073/pnas.0611149104
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- Shifman, Julia M. and Choi, Mee H., et el. (2006) Ca2+/calmodulin-dependent protein kinase II (CaMKII) is activated by calmodulin with two bound calciums; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 38; 13968-13973; PMCID PMC1599897; 10.1073/pnas.0606433103
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- Choi, Eun Jung and Mayo, Stephen L (2006) Generation and analysis of proline mutants in protein G; Protein Engineering, Design and Selection; Vol. 19; No. 6; 285-289; 10.1093/protein/gzl007
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- Oelschlaeger, Peter and Mayo, Stephen L. (2005) Hydroxyl groups in the ββ sandwich of metallo-β-lactamases favor enzyme activity: a computational protein design study; Journal of Molecular Biology; Vol. 350; No. 3; 395-401; 10.1016/j.jmb.2005.04.044
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- Oelschlaeger, Peter and Mayo, Stephen L., et el. (2005) Impact of remote mutations on metallo-β-lactamase substrate specificity: implications for the evolution of antibiotic resistance; Protein Science; Vol. 14; No. 3; 765-774; PMCID PMC2279297; 10.1110/ps.041093405
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- Meyer, Michelle M. and Silberg, Jonathan J., et el. (2003) Library analysis of SCHEMA-guided protein recombination; Protein Science; Vol. 12; No. 8; 1686-1693; PMCID PMC2323955; 10.1110/ps.0306603
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- Datta, Deepshikha and Mayo, Stephen L. (2002) A designed apoplastocyanin variant that shows reversible folding; Biochemical and Biophysical Research Communications; Vol. 296; No. 4; 988-990; 10.1016/S0006-291X(02)02037-5
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- Datta, Deepshikha and Wang, Pin, et el. (2002) A designed phenylalanyl-tRNA synthetase variant allows efficient in vivo incorporation of aryl ketone functionality into proteins; Journal of the American Chemical Society; Vol. 124; No. 20; 5652-5653; 10.1021/ja0177096
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- Bolon, Daniel N. and Mayo, Stephen L. (2001) Polar residues in the protein core of Escherichia coli thioredoxin are important for fold specificity; Biochemistry; Vol. 40; No. 34; 10047-10053; 10.1021/bi010427y
- Sarisky, Catherine A. and Mayo, Stephen L. (2001) The ββα fold: explorations in sequence space; Journal of Molecular Biology; Vol. 307; No. 5; 1411-1418; 10.1006/jmbi.2000.4345
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- Shimaoka, Motomu and Shifman, Julia M., et el. (2000) Computational design of an integrin I domain stabilized in the open high affinity conformation; Nature Structural Biology; Vol. 7; No. 8; 674-678; 10.1038/77978
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- Strop, Pavel and Marinescu, Andrei M., et el. (2000) Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design; Protein Science; Vol. 9; No. 7; 1391-1394; PMCID PMC2144681; 10.1110/ps.9.7.1391
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- Strop, Pavel and Mayo, Stephen L. (2000) Contribution of surface salt bridges to protein stability; Biochemistry; Vol. 39; No. 6; 1251-1255; 10.1021/bi992257j
- Gordon, D. Benjamin and Mayo, Stephen L. (1999) Branch-and-terminate: a combinatorial optimization algorithm for protein design; Structure; Vol. 7; No. 9; 1089-1098; 10.1016/S0969-2126(99)80176-2
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- Strop, Pavel and Mayo, Stephen L. (1999) Rubredoxin Variant Folds without Iron; Journal of the American Chemical Society; Vol. 121; No. 11; 2341-2345; 10.1021/ja9834780
- Street, Arthur G. and Mayo, Stephen L. (1998) Pairwise calculation of protein solvent-accessible surface areas; Folding and Design; Vol. 3; No. 4; 253-258; 10.1016/S1359-0278(98)00036-4
- Mayo, Stephen L. (1998) Duplicate Publication; Science; Vol. 280; No. 5371; 1815; 10.1126/science.280.5371.1815h
- Malakauskas, Sandra M. and Mayo, Stephen L. (1998) Design, structure and stability of a hyperthermophilic protein variant; Nature Structural Biology; Vol. 5; No. 6; 470-475; 10.1038/nsb0698-470
- Bökenkamp, Dirk and Desai, Amish, et el. (1998) Microfabricated Silicon Mixers for Submillisecond Quench-Flow Analysis; Analytical Chemistry; Vol. 70; No. 2; 232-236; 10.1021/ac9708250
- Dahiyat, Bassil I. and Sarisky, Catherine A., et el. (1997) De novo protein design: towards fully automated sequence selection; Journal of Molecular Biology; Vol. 273; No. 4; 789-796; 10.1006/jmbi.1997.1341
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- Dahiyat, Bassil I. and Mayo, Stephen L. (1997) Probing the role of packing specificity in protein design; Proceedings of the National Academy of Sciences of the United States of America; Vol. 94; No. 19; 10172-10177; PMCID PMC23334
- Su, Alyce and Mayo, Stephen L. (1997) Coupling backbone flexibility and amino acid sequence selection in protein design; Protein Science; Vol. 6; No. 8; 1701-1707; PMCID PMC2143777; 10.1002/pro.5560060810
- Morgan, Chantal S. and Holton, James M., et el. (1997) Circular dichroism determination of class I MHC-peptide equilibrium dissociation constants; Protein Science; Vol. 6; No. 8; 1771-1773; PMCID PMC2143769; 10.1002/pro.5560060819
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- Dahiyat, Bassil I. and Meade, Thomas J., et el. (1996) Site-specific modification of α-helical peptides with electron donors and acceptors; Inorganica Chimica Acta; Vol. 243; No. 1-2; 207-212; 10.1016/0020-1693(95)04909-6
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