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Mjolsness, Eric
Shapiro, Bruce E. and Meyerowitz, Elliot M., el al. (2013) Using cellzilla for plant growth simulations at the cellular level ; Frontiers in Plant Science; Vol. 4; Art. No. 408; PMCID PMC3797531; 10.3389/fpls.2013.00408
Cunha, Alexandre and Tarr, Paul T., el al. (2012) Computational Analysis of Live Cell Images of the Arabidopsis thaliana Plant ; ISBN 9780123884039; Computational Methods in Cell Biology; 285-323; 10.1016/B978-0-12-388403-9.00012-6
Young, Jonathan W. and Locke, James C. W., el al. (2012) Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy ; Nature Protocols; Vol. 7; No. 1; 80-88; PMCID PMC4161363; 10.1038/nprot.2011.432
Hart, Christopher E. and Mjolsness, Eric, el al. (2006) Connectivity in the yeast cell cycle transcription network : inferences from neural networks ; PLoS Computational Biology; Vol. 2; No. 12; 1592-1607; PMCID PMC1761652; 10.1371/journal.pcbi.0020169
Omelyanchuk, N. A. and Mironova, V. V., el al. (2006) A systems approach to morphogenesis in Arabidopsis thaliana: I. AGNS database ; Biophysics; Vol. 51; No. S1; 75-82; 10.1134/s0006350906070165
Gor, Victoria and Elowitz, Michael, el al. (2006) Tracking Cell Signals in Fluorescent Images ; ISBN 0-7695-2372-2; Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05), San Diego, CA, 20-25 June 2005; Art. No. 142; 10.1109/CVPR.2005.544
Omelyanchuk, N. and Mironova, V., el al. (2006) AGNS—A Database on Expression of Arabidopsis Genes ; ISBN 978-0-387-29450-6; Bioinformatics of Genome Regulation and Structure II; 433-442; 10.1007/0-387-29455-4_41
Gor, V. and Shapiro, B. E., el al. (2006) A Software Architecture for Developmental Modeling in Plants: The Computable Plant Project ; ISBN 978-0-387-29450-6; Bioinformatics of Genome Regulation and Structure II; 345-354; 10.1007/0-387-29455-4_33
Jönsson, Henrik and Heisler, Marcus, el al. (2005) Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem ; Bioinformatics; Vol. 21; No. S1; i232-i240; 10.1093/bioinformatics/bti1036
Hart, Christopher E. and Sharenbroich, Lucas, el al. (2005) A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data ; Nucleic Acids Research; Vol. 33; No. 8; 2580-2594; PMCID PMC1092273; 10.1093/nar/gki536
Chudova, Darya and Hart, Christopher, el al. (2004) Gene Expression Clustering with Functional Mixture Models ; ISBN 0-262-20152-6; Advances in Neural Information Processing Systems 16 (NIPS 2003); 683-690
Jönsson, H. and Shapiro, B. E., el al. (2004) Modeling Plant Development with Gene Regulation Networks Including Signaling and Cell Division ; ISBN 978-1-4757-4613-6; Bioinformatics of Genome Regulation and Structure; 311-318; 10.1007/978-1-4419-7152-4_33
Shapiro, Bruce E. and Levchenko, Andre, el al. (2003) Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations ; Bioinformatics; Vol. 19; No. 5; 677-678; 10.1093/bioinformatics/btg042
Jönsson, Henrik and Shapiro, Bruce E., el al. (2003) Signalling in multicellular models of plant development ; ISBN 9780080497587; On Growth, Form and Computers; 156-161; 10.1016/B978-012428765-5/50041-4
Mjolsness, Eric and Mann, Tobias, el al. (2000) From Coexpression to Coregulation: An Approach to Inferring Transcriptional Regulation among Gene Classes from Large-Scale Expression Data ; ISBN 0-262-19450-3; Advances in Neural Information Processing Systems 12 (NIPS 1999); 928-934
