Newman, Dianne

Article from CaltechAUTHORS

• Squyres, Georgia R and Newman, Dianne (2024) Biofilms as more than the sum of their parts: lessons from developmental biology; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
• Flamholz, Avi I. and Goldford, Joshua E., et el. (2024) Annotation-free prediction of microbial dioxygen utilization; mSystems; e00763-24; 10.1128/msystems.00763-24
• Zhang, Oumeng and Alcalde, Reinaldo E., et el. (2024) Investigating 3D microbial community dynamics of the rhizosphere using quantitative phase and fluorescence microscopy; Proceedings of the National Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
• Wang, Renée Z. and Lonergan, Zachery R., et el. (2024) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; e2319960121; 10.1073/pnas.2319960121
• Kim, Jane H. and Dong, Julianna, et el. (2024) Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity; Antioxidants; Vol. 13; No. 6; 655; PMCID PMC11200925; 10.3390/antiox13060655
• Tsypin, Lev M. Z. and Saunders, Scott H., et el. (2024) Genetically dissecting the electron transport chain of a soil bacterium reveals a generalizable mechanism for biological phenazine-1-carboxylic acid oxidation; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
• Magkiriadou, Sofia and Stepp, Willi L., et el. (2024) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
• Zhang, Irene H. and Borer, Benedict, et el. (2024) Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen-deficient zones with diverse metabolic potential; mBio; e02918-23; 10.1128/mbio.02918-23
• Kim, Jane H. and Spero, Melanie, et el. (2024) Targeting Anaerobic Respiration in Pseudomonas aeruginosa with Chlorate Improves Healing of Chronic Wounds; Advances in Wound Care; Vol. 13; No. 2; 53-69; 10.1089/wound.2023.0036
• Larsson, Elin M. and Murray, Richard M., et el. (2024) Engineering the Soil Bacterium Pseudomonas synxantha 2–79 into a Ratiometric Bioreporter for Phosphorus Limitation; ACS Synthetic Biology; 10.1021/acssynbio.3c00642
• Thalhammer, Korbinian O. and Newman, Dianne K. (2023) A phenazine-inspired framework for identifying biological functions of microbial redox-active metabolites; Current Opinion in Chemical Biology; Vol. 75; Art. No. 102320; 10.1016/j.cbpa.2023.102320
• Jiménez Otero, Fernanda and Newman, Dianne K., et el. (2023) Pyocyanin-dependent electrochemical inhibition of Pseudomonas aeruginosa biofilms is synergistic with antibiotic treatment; mBio; Vol. 14; No. 4; e0070223; PMCID PMC10470778; 10.1128/mbio.00702-23
• Ciemniecki, John A. and Newman, Dianne K. (2023) NADH dehydrogenases are the predominant phenazine reductases in the electron transport chain of Pseudomonas aeruginosa; Molecular Microbiology; Vol. 119; No. 5; 560-573; PMCID PMC11129870; 10.1111/mmi.15049
• McRose, Darcy L. and Liang, Jinyang, et el. (2023) The chemical ecology of coumarins and phenazines affects iron acquisition by pseudomonads; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 14; Art. No. e2217951120; PMCID PMC10083548; 10.1073/pnas.2217951120
• Flamholz, Avi I. and Saccomano, Samuel, et el. (2022) Optical O₂ Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria; mBio; Vol. 13; No. 6; Art. No. e0207622; PMCID PMC9765510; 10.1128/mbio.02076-22
• Wilbert, Steven A. and Newman, Dianne K. (2022) The contrasting roles of nitric oxide drive microbial community organization as a function of oxygen presence; Current Biology; Vol. 32; No. 24; 5221-5234.e4; PMCID PMC9772256; 10.1016/j.cub.2022.10.008
• Spero, Melanie A. and Jones, Jeff, et el. (2022) Mechanisms of chlorate toxicity and resistance in Pseudomonas aeruginosa; Molecular Microbiology; Vol. 118; No. 4; 321-335; PMCID PMC9589919; 10.1111/mmi.14972
• Tumasyan, A. and Adam, W., et el. (2022) Search for Resonances Decaying to Three W Bosons in Proton-Proton Collisions at √s=13TeV; Physical Review Letters; Vol. 129; No. 2; 021802; 10.1103/physrevlett.129.021802
• Tookmanian, Elise and Junghans, Lisa, et el. (2022) Hopanoids Confer Robustness to Physicochemical Variability in the Niche of the Plant Symbiont Bradyrhizobium diazoefficiens; Journal of Bacteriology; Vol. 204; No. 7; jb.00442-21; PMCID PMC9295548; 10.1128/jb.00442-21
• Livingston, Jadzia and Spero, Melanie A., et el. (2022) Visualization of mRNA Expression in Pseudomonas aeruginosa Aggregates Reveals Spatial Patterns of Fermentative and Denitrifying Metabolism; Applied and Environmental Microbiology; Vol. 88; No. 11; Art. No. aem.00439-22; 10.1128/aem.00439-22
• Meirelles, Lucas A. and Newman, Dianne K. (2022) Phenazines and toxoflavin act as interspecies modulators of resilience to diverse antibiotics; Molecular Microbiology; Vol. 117; No. 6; 1384-1404; PMCID PMC10249331; 10.1111/mmi.14915
• Flamholz, Avi I. and Newman, Dianne K. (2022) Microbial communities: The metabolic rate is the trait; Current Biology; Vol. 32; No. 5; R215-R218; 10.1016/j.cub.2022.02.002
• Perry, Elena K. and Meirelles, Lucas A., et el. (2022) From the soil to the clinic: the impact of microbial secondary metabolites on antibiotic tolerance and resistance; Nature Reviews Microbiology; Vol. 20; No. 3; 129-142; PMCID PMC8857043; 10.1038/s41579-021-00620-w
• Perry, Elena K. and Newman, Dianne K. (2022) Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field; Applied and Environmental Microbiology; Vol. 88; No. 6; Art. No. e02320-21; PMCID PMC8939311; 10.1128/aem.02320-21
• Dahlstrom, Kurt M. and Newman, Dianne K. (2022) Soil bacteria protect fungi from phenazines by acting as toxin sponges; Current Biology; Vol. 32; No. 2; 275-288; 10.1016/j.cub.2021.11.002
• O'Toole, George A. and Crabbé, Aurélie, et el. (2021) Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions; mBio; Vol. 12; No. 5; Art. No. mBio.01763-21; PMCID PMC8546538; 10.1128/mbio.01763-21
• Dar, Daniel and Dar, Nina, et el. (2021) Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution; Science; Vol. 373; No. 6556; Art. No. eabi4882; PMCID PMC8454218; 10.1126/science.abi4882
• Jiménez Otero, Fernanda and Chadwick, Grayson L., et el. (2021) Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters; Applied and Environmental Microbiology; Vol. 87; No. 17; Art. No. AEM.00706-21; PMCID PMC8357294; 10.1128/aem.00706-21
• Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid Oxidation by Citrobacter portucalensis MBL; mBio; Vol. 12; No. 4; Art. No. e02265-21; 10.1128/mBio.02265-21
• Tookmanian, Elise M. and Belin, Brittany J., et el. (2021) The role of hopanoids in fortifying rhizobia against a changing climate; Environmental Microbiology; Vol. 23; No. 6; 2906-2918; 10.1111/1462-2920.15594
• Kim, Jane H. and Spero, Melanie, et el. (2021) Chlorate And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And Lead To Healing Of Chronic Wounds; Wound Repair and Regeneration; Vol. 29; No. 3; A44-A45; 10.1111/wrr.12921
• VanDrisse, Chelsey M. and Lipsh-Sokolik, Rosalie, et el. (2021) Computationally designed pyocyanin demethylase acts synergistically with tobramycin to kill recalcitrant Pseudomonas aeruginosa biofilms; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 12; Art. No. e2022012118; PMCID PMC8000102; 10.1073/pnas.2022012118
• Piddini, Eugenia and Shalek, Alex K., et el. (2021) How are methodological developments enabling insights into cell behavior in cellular communities?; Cell Systems; Vol. 12; No. 3; 207-209; 10.1016/j.cels.2021.02.005
• Meirelles, Lucas A. and Perry, Elena K., et el. (2021) Bacterial defenses against a natural antibiotic promote collateral resilience to clinical antibiotics; PLoS Biology; Vol. 19; No. 3; Art. No. e3001093; 10.1371/journal.pbio.3001093
• McRose, Darcy L. and Newman, Dianne K. (2021) Redox-active antibiotics enhance phosphorus bioavailability; Science; Vol. 371; No. 6533; 1033-1037; PMCID PMC8051141; 10.1126/science.abd1515
• Mickol, Rebecca L. and Louyakis, Artemis S., et el. (2021) Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR; Microbiology Resource Announcements; Vol. 10; No. 1; Art. No. e01302-20; 10.1128/mra.01302-20
• Dahlstrom, Kurt M. and McRose, Darcy L., et el. (2020) Keystone metabolites of crop rhizosphere microbiomes; Current Biology; Vol. 30; No. 19; R1131-R1137; PMCID PMC8059773; 10.1016/j.cub.2020.08.005
• Dar, Daniel and Thomashow, Linda S., et el. (2020) Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes; eLife; Vol. 2020; No. 9; Art. No. e59726; 10.7554/eLife.59726
• Saunders, Scott H. and Tse, Edmund C. M., et el. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms; Cell; Vol. 182; No. 4; 919-932; PMCID PMC7457544; 10.1016/j.cell.2020.07.006
• Tsypin, Lev M. and Saunders, Scott H., et el. (2020) Draft Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter portucalensis Strain MBL; Microbiology Resource Announcements; Vol. 9; No. 32; Art. No. e00695-20; PMCID PMC7409854; 10.1128/mra.00695-20
• Ciemniecki, John A. and Newman, Dianne K. (2020) The potential for redox-active metabolites (RAMs) to enhance or unlock anaerobic survival metabolisms in aerobes; Journal of Bacteriology; Vol. 202; No. 11; Art. No. e00797-19; PMCID PMC7221258; 10.1128/jb.00797-19
• Gallego-Hernandez, A. L. and DePas, W. H., et el. (2020) Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 20; 11010-11017; PMCID PMC7245069; 10.1073/pnas.1916571117
• Basta, David W. and Angeles-Albores, David, et el. (2020) Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 8; 4358-4367; PMCID PMC7049150; 10.1073/pnas.1912082117
• Glasser, Nathaniel R. and Hunter, Ryan C., et el. (2019) Refinement of metabolite detection in cystic fibrosis sputum reveals heme correlates with lung function decline; PLoS ONE; Vol. 14; No. 12; Art. No. e0226578; PMCID PMC6919587; 10.1371/journal.pone.0226578
• Jorth, Peter and Spero, Melanie A., et el. (2019) Quantitative Visualization of Gene Expression in Mucoid and Nonmucoid Pseudomonas aeruginosa Aggregates Reveals Localized Peak Expression of Alginate in the Hypoxic Zone; mBio; Vol. 10; No. 6; Art. No. e02622-19; PMCID PMC6918079; 10.1128/mbio.02622-19
• Spero, M. A. and Silveira, C. B., et el. (2019) Chlorate's Potential as a Pro-Drug for Killing Antibiotic-Tolerant Pathogens in the Cystic Fibrosis Lung; Pediatric Pulmonology; Vol. 54; No. S2; S281; 10.1002/ppul.22495
• DePas, W. and Bergkessel, M., et el. (2019) Nontuberculous Mycobacterial Aggregation is Regulated by C:N Balance; Pediatric Pulmonology; Vol. 54; No. S2; S310; 10.1002/ppul.22495
• Belin, Brittany J. and Tookmanian, Elise T., et el. (2019) Extended hopanoid loss reduces bacterial motility and surface attachment, and leads to heterogeneity in root nodule growth kinetics in a Bradyrhizobium-Aeschynomene symbiosis; Molecular Plant-Microbe Interactions; Vol. 32; No. 10; 1415-1428; 10.1094/MPMI-04-19-0111-R
• Ericson, Charles F. and Eisenstein, Fabian, et el. (2019) A contractile injection system stimulates tubeworm metamorphosis by translocating a proteinaceous effector; eLife; Vol. 8; Art. No. e46845; PMCID PMC6748791; 10.7554/elife.46845
• Bergkessel, Megan and Babin, Brett M., et el. (2019) The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa; Molecular Microbiology; Vol. 112; No. 3; 992-1009; PMCID PMC6736744; 10.1111/mmi.14337
• Perry, Elena K. and Newman, Dianne K. (2019) The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens; Molecular Microbiology; Vol. 112; No. 1; 199-218; PMCID PMC6615960; 10.1111/mmi.14263
• DePas, William H. and Bergkessel, Megan, et el. (2019) Aggregation of nontuberculous mycobacteria is regulated by carbon:nitrogen balance; mBio; Vol. 10; No. 4; Art. No. e01715-19; PMCID PMC6692514; 10.1128/mBio.01715-19
• Kee, H. Lynn and Mikheyeva, Irina V., et el. (2019) Draft Genome Sequence of the Iridescent Marine Bacterium Tenacibaculum discolor Strain IMLK18; Microbiology Resource Announcements; Vol. 8; No. 5; Art. No. e01683-18; PMCID PMC6357648; 10.1128/mra.01683-18
• Neubauer, Cajetan and Sessions, Alex L., et el. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics; Rapid Communications in Mass Spectrometry; Vol. 32; No. 24; 2129-2140; 10.1002/rcm.8288
• Meirelles, Lucas A. and Newman, Dianne K. (2018) Both toxic and beneficial effects of pyocyanin contribute to the lifecycle of Pseudomonas aeruginosa; Molecular Microbiology; Vol. 110; No. 6; 995-1010; PMCID PMC6281804; 10.1111/mmi.14132
• Neubauer, Cajetan and Kasi, Ajay S., et el. (2018) Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum; Journal of Bacteriology; Vol. 200; No. 24; Art. No. e00365-18; PMCID PMC6256016; 10.1128/jb.00365-18
• Saunders, Scott H. and Newman, Dianne K. (2018) Extracellular Electron Transfer Transcends Microbe-Mineral Interactions; Cell Host & Microbe; Vol. 24; No. 5; 611-613; 10.1016/j.chom.2018.10.018
• Neubauer, Cajetan and Sweredoski, Michael J., et el. (2018) Scanning the isotopic structure of molecules by tandem mass spectrometry; International Journal of Mass Spectrometry; Vol. 434; 276-286; 10.1016/j.ijms.2018.08.001
• Spero, Melanie A. and Newman, Dianne K. (2018) Chlorate Specifically Targets Oxidant-Starved, Antibiotic-Tolerant Populations of Pseudomonas aeruginosa Biofilms; mBio; Vol. 9; No. 5; Art. No. e01400-18; PMCID PMC6156191; 10.1128/mbio.01400-18
• Glasser, Nathaniel R. and Oyala, Paul H., et el. (2018) Structural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformations; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 37; E8614-E8623; PMCID PMC6140538; 10.1073/pnas.1807984115
• Newman, Dianne K. (2018) A personal tribute to Terry Beveridge; Canadian Journal of Microbiology; Vol. 64; No. 9; ix-xi; 10.1139/cjm-2017-0515
• Jorth, P. and Spero, M. A., et el. (2018) In situ gene expression analysis of mucoid P. aeruginosa biofilms suggests that alginate expression is restricted to microaerobic regions of the biofilm; Pediatric Pulmonology; Vol. 53; No. S2; Art. No. 462; 10.1002/ppul.24152
• Zhalnina, Kateryna and Zengler, Karsten, et el. (2018) Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry; mBio; Vol. 9; No. 4; Art. No. e01175-18; PMCID PMC6050955; 10.1128/mBio.01175-18
• Belin, Brittany J. and Busset, Nicolas, et el. (2018) Hopanoid lipids: from membranes to plant–bacteria interactions; Nature Reviews Microbiology; Vol. 16; No. 5; 304-315; PMCID PMC6087623; 10.1038/nrmicro.2017.173
• Faure, E. and Jorth, P., et el. (2018) Intracellular Persistence of Pseudomonas Aeruginosa in Airway Epithelial Cells and in Cystic Fibrosis Lung; American Journal of Respiratory and Critical Care Medicine; Vol. 197; Art. No. A6262
• Costa, Kyle C. and Moskatel, Leon S., et el. (2018) PhdA catalyzes the first step of phenazine-1-carboxylic acid degradation in Mycobacterium fortuitum; Journal of Bacteriology; Vol. 200; No. 10; Art. No. e00763-17; PMCID PMC5915785; 10.1128/JB.00763-17
• Saunders, Scott H. and Yates, Matthew D., et el. (2018) Probing Phenazine Electron Transfer and Retention in Pseudomonas Aeruginosa Biofilms; Biophysical Journal; Vol. 114; No. 3; 28a; 10.1016/j.bpj.2017.11.198
• Basta, David W. and Bergkessel, Megan, et el. (2017) Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa; mBio; Vol. 8; No. 6; Art. No. e01170; PMCID PMC5705914; 10.1128/mBio.01170-17
• Babin, Brett M. and Atangcho, Lydia, et el. (2017) Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms; mBio; Vol. 8; No. 5; Art. No. e01593-17; PMCID PMC5654934; 10.1128/mBio.01593-17
• Bergkessel, M. and Newman, D. K., et el. (2017) SutA is a Global Transcriptional Regulator Operating during Slow Growth in Pseudomonas Aeruginosa; Pediatric Pulmonology; Vol. 52; No. S47; S366-S367; 10.1002/ppul.23840
• Glasser, Nathaniel R. and Saunders, Scott H., et el. (2017) The Colorful World of Extracellular Electron Shuttles; Annual Review of Microbiology; Vol. 71; 731-751; PMCID PMC5679407; 10.1146/annurev-micro-090816-093913
• Kasi, Ajay S. and Neubauer, Cajetan, et el. (2017) Bacterial Growth Rate In Cystic Fibrosis Pulmonary Exacerbation; American Journal of Respiratory and Critical Care Medicine; Vol. 195; Art. No. A4856
• Glasser, Nathaniel R. and Wang, Benjamin X., et el. (2017) The pyruvate and α-ketoglutarate dehydrogenase complexes of Pseudomonas aeruginosa catalyze pyocyanin and phenazine-1-carboxylic acid reduction via the subunit dihydrolipoamide dehydrogenase; Journal of Biological Chemistry; Vol. 292; No. 13; 5593-5607; PMCID PMC5392700; 10.1074/jbc.M116.772848
• Racki, Lisa R. and Tocheva, Elitza I., et el. (2017) Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 12; E2440-E2449; PMCID PMC5373386; 10.1073/pnas.1615575114
• Costa, Kyle C. and Glasser, Nathaniel R., et el. (2017) Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms; Science; Vol. 355; No. 6321; 170-173; PMCID PMC5303695; 10.1126/science.aag3180
• Ricci, J. N. and Morton, R., et el. (2017) Hopanoids play a role in stress tolerance and nutrient storage in the cyanobacterium Nostoc punctiforme; Geobiology; Vol. 15; No. 1; 173-183; 10.1111/gbi.12204
• Newman, D. K. (2016) Primary functions for "secondary" metabolites in microbial communities; Molecular Biology of the Cell; Vol. 27; No. 25; S13; 10.1091/mbc.E16-10-0736
• Choi, Harry M. T. and Calvert, Colby R., et el. (2016) Mapping a multiplexed zoo of mRNA expression; Development; Vol. 143; No. 19; 3632-3637; PMCID PMC5087610; 10.1242/dev.140137
• Newman, Dianne (2016) Pathogen Growth Rates in CF Sputum are Slow and Heterogeneous: Implications for Research and Treatment Strategies; Pediatric Pulmonology; Vol. 51; No. S45; 162; 10.1002/ppul.23575
• DePas, William H. and Starwalt-Lee, Ruth, et el. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling; mBio; Vol. 7; No. 5; e00796-16; PMCID PMC5040109; 10.1128/mBio.00796-16
• Shikuma, Nicholas J. and Antoshechkin, Igor, et el. (2016) Stepwise metamorphosis of the tubeworm Hydroides elegans is mediated by a bacterial inducer and MAPK signaling; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 36; 10097-10102; PMCID PMC5018781; 10.1073/pnas.1603142113
• Bergkessel, Megan and Basta, David W., et el. (2016) The physiology of growth arrest: uniting molecular and environmental microbiology; Nature Reviews Microbiology; Vol. 14; No. 9; 549-562; PMCID PMC10069271; 10.1038/nrmicro.2016.107
• Newman, Dianne K. and Neubauer, Cajetan, et el. (2016) Cellular and Molecular Biological Approaches to Interpreting Ancient Biomarkers; Annual Review of Earth and Planetary Sciences; Vol. 44; 493-522; 10.1146/annurev-earth-050212-123958
• Babin, Brett M. and Bergkessel, Megan, et el. (2016) SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 5; E597-E605; PMCID PMC4747698; 10.1073/pnas.1514412113
• Kopf, Sebastian H. and Sessions, Alex L., et el. (2016) Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 2; E110-E116; PMCID PMC4720290; 10.1073/pnas.1512057112
• Kreamer, Naomi N. and Phillips, Rob, et el. (2015) Predicting the impact of promoter variability on regulatory outputs; Scientific Reports; Vol. 5; Art. No. 18238; PMCID PMC4682146; 10.1038/srep18238
• Mariita, Richard M. and Bhatnagar, Srijak, et el. (2015) Complete Genome Sequence of Streptomyces sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts; Genome Announcements; Vol. 3; No. 6; Art. No. e01506-15; PMCID PMC4698389; 10.1128/genomeA.01506-15
• Mariita, Richard M. and Bhatnagar, Srijak, et el. (2015) Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts; Genome Announcements; Vol. 3; No. 6; Art. No. e01504-15; PMCID PMC4698388; 10.1128/genomeA.01504-15
• Costa, Kyle C. and Bergkessel, Megan, et el. (2015) Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity; mBio; Vol. 6; No. 6; Art. No. e01520-15; PMCID PMC4626857; 10.1128/mBio.01520-15
• Kulkarni, Gargi and Busset, Nicolas, et el. (2015) Specific hopanoid classes differentially affect free-living and symbiotic states of Bradyrhizobium diazoefficiens; mBio; Vol. 6; No. 5; e01251-15; PMCID PMC4620461; 10.1128/mBio.01251-15
• Neubauer, C. and Dalleska, N. F., et el. (2015) Lipid remodeling in Rhodopseudomonas palustris TIE-1 upon loss of hopanoids and hopanoid methylation; Geobiology; Vol. 13; No. 5; 443-453; 10.1111/gbi.12143
• Cowley, Elise S. and Kopf, Sebastian H., et el. (2015) Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation; mBio; Vol. 6; No. 4; Art. No. e00767; PMCID PMC4551978; 10.1128/mBio.00767-15
• Wu, C.-H. and Kong, L., et el. (2015) Quantitative hopanoid analysis enables robust pattern detection and comparison between laboratories; Geobiology; Vol. 13; No. 4; 391-407; PMCID PMC4676935; 10.1111/gbi.12132
• Kopf, Sebastian H. and McGlynn, Shawn E., et el. (2015) Heavy water and ¹⁵N labeling with NanoSIMS analysis reveals growth-rate dependent metabolic heterogeneity in chemostats; Environmental Microbiology; Vol. 17; No. 7; 2542-2556; PMCID PMC4587896; 10.1111/1462-2920.12752
• McCallin, Kyle and Cowley, Elise, et el. (2015) Sputum Iron Levels During Cystic Fibrosis Pulmonary Exacerbation: A Longitudinal Study; American Journal of Respiratory and Critical Care Medicine; Vol. 191; Art. No. A3343
• Ricci, J. N. and Michel, A. J., et el. (2015) Phylogenetic analysis of HpnP reveals the origin of 2-methylhopanoid production in Alphaproteobacteria; Geobiology; Vol. 13; No. 3; 267-277; 10.1111/gbi.12129
• Morgan, James J. and Newman, Dianne K. (2015) A Conversation with James J. Morgan; Annual Review of Earth and Planetary Sciences; Vol. 43; 1-27; 10.1146/annurev-earth-060614-105439
• Van Sambeek, Lindsey and Cowley, Elise S., et el. (2015) Sputum Glucose and Glycemic Control in Cystic Fibrosis-Related Diabetes: A Cross-Sectional Study; PLoS ONE; Vol. 10; No. 3; Art. No. e0119938; PMCID PMC4372582; 10.1371/journal.pone.0119938
• Kreamer, Naomi N. and Costa, Flavia, et el. (2015) The Ferrous Iron-Responsive BqsRS Two-Component System Activates Genes That Promote Cationic Stress Tolerance; mBio; Vol. 6; No. 2; Art. No. e02549-14; PMCID PMC4358008; 10.1128/mBio.02549-14
• Wu, Chia-Hung and Bialecka-Fornal, Maja, et el. (2015) Methylation at the C-2 position of hopanoids increases rigidity in native bacterial membranes; eLife; Vol. 4; Art. No. e05663; PMCID PMC4337730; 10.7554/eLife.05663
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• Saraiva, Ivo H. and Newman, Dianne K., et el. (2012) Functional Characterization of the FoxE Iron Oxidoreductase from the Photoferrotroph Rhodobacter ferrooxidans SW2; Journal of Biological Chemistry; Vol. 287; No. 30; 25541-25548; PMCID PMC3408196; 10.1074/jbc.M112.360636
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• Kreamer, Naomi N. K. and Wilks, Jessica C., et el. (2012) BqsR/BqsS Constitute a Two-Component System That Senses Extracellular Fe(II) in Pseudomonas aeruginosa; Journal of Bacteriology; Vol. 194; No. 5; 1195-1204; PMCID PMC3294787; 10.1128/JB.05634-11
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• Sullivan, Nora L. and Tzeranis, Dimitrios S., et el. (2011) Quantifying the Dynamics of Bacterial Secondary Metabolites by Spectral Multiphoton Microscopy; ACS Chemical Biology; Vol. 6; No. 9; 893-899; PMCID PMC3212935; 10.1021/cb200094w
• Waldbauer, Jacob R. and Newman, Dianne K., et el. (2011) Microaerobic steroid biosynthesis and the molecular fossil record of Archean life; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 33; 13409-13414; PMCID PMC3158215; 10.1073/pnas.1104160108
• Reddy, Kirthi C. and Hunter, Ryan C., et el. (2011) Caenorhabditis elegans NPR-1–mediated behaviors are suppressed in the presence of mucoid bacteria; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 31; 12887-12892; PMCID PMC3150904; 10.1073/pnas.1108265108
• Bird, Lina J. and Bonnefoy, Violaine, et el. (2011) Bioenergetic challenges of microbial iron metabolisms; Trends in Microbiology; Vol. 19; No. 7; 330-340; 10.1016/j.tim.2011.05.001
• Wang, Yun and Wilks, Jessica C., et el. (2011) Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition; Journal of Bacteriology; Vol. 193; No. 14; 3606-3617; PMCID PMC3133341; 10.1128/JB.00396-11
• Newman, Dianne K. and Coleman, Maureen L. (2011) Where reductionism meets complexity: a call for growth in the study of non-growth; Environmental Microbiology Reports; Vol. 3; No. 1; 14-15; 10.1111/j.1758-2229.2010.00236.x
• Bose, Arpita and Newman, Dianne K. (2011) Regulation of the phototrophic iron oxidation (pio) genes in Rhodopseudomonas palustris TIE-1 is mediated by the global regulator, FixK; Molecular Microbiology; Vol. 79; No. 1; 63-75; 10.1111/j.1365-2958.2010.07430.x
• Hunter, Ryan C. and Newman, Dianne K. (2010) A Putative ABC Transporter, HatABCDE, Is among Molecular Determinants of Pyomelanin Production in Pseudomonas aeruginosa; Journal of Bacteriology; Vol. 192; No. 22; 5962-5971; PMCID PMC2976449; 10.1128/JB.01021-10
• Kappler, A. and Johnson, C. M., et el. (2010) Evidence for equilibrium iron isotope fractionation by nitrate-reducing iron(II)-oxidizing bacteria; Geochimica et Cosmochimica Acta; Vol. 74; No. 10; 2826-2842; PMCID PMC2873596; 10.1016/j.gca.2010.02.017
• Welander, Paula V. and Coleman, Maureen L., et el. (2010) Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 19; 8537-8542; PMCID PMC2889317; 10.1073/pnas.0912949107
• Ramos, Itzel and Dietrich, Lars E. P., et el. (2010) Phenazines affect biofilm formation by Pseudomonas aeruginosa in similar ways at various scales; Research in Microbiology; Vol. 161; No. 3; 187-191; PMCID PMC2886020; 10.1016/j.resmic.2010.01.003
• Newman, Dianne K. (2010) Feasting on Minerals; Science; Vol. 327; No. 5967; 793-794; 10.1126/science.1184229
• Wang, Yun and Kern, Suzanne E., et el. (2010) Endogenous Phenazine Antibiotics Promote Anaerobic Survival of Pseudomonas aeruginosa via Extracellular Electron Transfer; Journal of Bacteriology; Vol. 192; No. 1; 365-369; PMCID PMC2798253; 10.1128/JB.01188-09
• Doughty, D. M. and Hunter, R. C., et el. (2009) 2-Methylhopanoids are maximally produced in akinetes of Nostoc punctiforme: geobiological implications; Geobiology; Vol. 7; No. 5; 524-532; PMCID PMC2860729; 10.1111/j.1472-4669.2009.00217.x
• Poulain, Alexandre J. and Newman, Dianne K. (2009) Rhodobacter capsulatus Catalyzes Light-Dependent Fe(II) Oxidation under Anaerobic Conditions as a Potential Detoxification Mechanism; Applied and Environmental Microbiology; Vol. 75; No. 21; 6639-6646; PMCID PMC2772431; 10.1128/AEM.00054-09
• Welander, Paula V. and Hunter, Ryan C., et el. (2009) Hopanoids Play a Role in Membrane Integrity and pH Homeostasis in Rhodopseudomonas palustris TIE-1; Journal of Bacteriology; Vol. 191; No. 19; 6145-6156; PMCID PMC2747905; 10.1128/JB.00460-09
• Boal, Amie K. and Genereux, Joseph C., et el. (2009) Redox signaling between DNA repair proteins for efficient lesion detection; Proceedings of the National Academy of Sciences of the United States of America; Vol. 106; No. 36; 15237-15242; PMCID PMC2741234; 10.1073/pnas.0908059106
• Sessions, Alex L. and Doughty, David M., et el. (2009) The Continuing Puzzle of the Great Oxidation Event; Current Biology; Vol. 19; No. 14; R567-R574; 10.1016/j.cub.2009.05.054
• Newman, Dianne K. (2009) From Iron Oxides to Infections; ChemSusChem; Vol. 2; No. 5; 380-382; 10.1002/cssc.200900038
• Croal, L. R. and Jiao, Y., et el. (2009) Phototrophic Fe(II) oxidation in an atmosphere of H_2: implications for Archean banded iron formations; Geobiology; Vol. 7; No. 1; 21-24; PMCID PMC2763526; 10.1111/j.1472-4669.2008.00185.x
• Dietrich, Lars E. P. and Teal, Tracy K., et el. (2008) Redox-Active Antibiotics Control Gene Expression and Community Behavior in Divergent Bacteria; Science; Vol. 321; No. 5893; 1203-1206; PMCID PMC2745639; 10.1126/science.1160619
• Newman, D. K. (2008) From iron oxides to infections; Geobiology; Vol. 6; No. 3; 196-200; PMCID PMC2804855; 10.1111/j.1472-4669.2008.00155.x
• Wang, Yun and Newman, Dianne K. (2008) Redox Reactions of Phenazine Antibiotics with Ferric (Hydr)oxides and Molecular Oxygen; Environmental Science and Technology; Vol. 42; No. 7; 2380-2386; PMCID PMC2778262; 10.1021/es702290a
• Gorodetsky, Alon A. and Dietrich, Lars E. P., et el. (2008) DNA binding shifts the redox potential of the transcription factor SoxR; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 10; 3684-3689; PMCID PMC2268809; 10.1073/pnas.0800093105
• Malasarn, Davin and Keeffe, Jennifer R., et el. (2008) Characterization of the Arsenate Respiratory Reductase from Shewanella sp. Strain ANA-3; Journal of Bacteriology; Vol. 190; No. 1; 135-142; PMCID PMC2223751; 10.1128/JB.01110-07
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• Rashby, Sky E. and Sessions, Alex L., et el. (2007) Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 38; 15099-15014; PMCID PMC1986619; 10.1073/pnas.0704912104
• Price-Whelan, Alexa and Dietrich, Lars E. P., et el. (2007) Pyocyanin Alters Redox Homeostasis and Carbon Flux through Central Metabolic Pathways in Pseudomonas aeruginosa PA14; Journal of Bacteriology; Vol. 189; No. 17; 6372-6381; PMCID PMC1951912; 10.1128/JB.00505-07
• Gralnick, Jeffrey A. and Newman, Dianne K. (2007) Extracellular respiration; Molecular Microbiology; Vol. 65; No. 1; 1-11; PMCID PMC2804852; 10.1111/j.1365-2958.2007.05778.x
• Bosak, T. and Greene, S. E., et el. (2007) A likely role for anoxygenic photosynthetic microbes in the formation of ancient stromatolites; Geobiology; Vol. 5; No. 2; 119-126; PMCID PMC2947360; 10.1111/j.1472-4669.2007.00104.x
• Croal, Laura R. and Jiao, Yongqin, et el. (2007) The fox Operon from Rhodobacter Strain SW2 Promotes Phototrophic Fe(II) Oxidation in Rhodobacter capsulatus SB1003; Journal of Bacteriology; Vol. 189; No. 5; 1774-1782; PMCID PMC1855712; 10.1128/JB.01395-06
• Jiao, Yongqin and Newman, Dianne K. (2007) The pio Operon Is Essential for Phototrophic Fe(II) Oxidation in Rhodopseudomonas palustris TIE-1; Journal of Bacteriology; Vol. 189; No. 5; 1765-1773; PMCID PMC1855732; 10.1128/JB.00776-06
• Teal, Tracy K. and Lies, Douglas P., et el. (2006) Spatiometabolic Stratification of Shewanella oneidensis Biofilms; Applied and Environmental Microbiology; Vol. 72; No. 11; 7324-7330; PMCID PMC1636161; 10.1128/AEM.01163-06
• Campbell, Kate M. and Malasarn, Davin, et el. (2006) Simultaneous Microbial Reduction of Iron(III) and Arsenic(V) in Suspensions of Hydrous Ferric Oxide; Environmental Science and Technology; Vol. 40; No. 19; 5950-5955; 10.1021/es0600476
• Dietrich, Lars E. P. and Price-Whelan, Alexa, et el. (2006) The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa; Molecular Microbiology; Vol. 61; No. 5; 1308-1321; 10.1111/j.1365-2958.2006.05306.x
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• Gralnick, Jeffrey A. and Vali, Hojatollah, et el. (2006) Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 12; 4669-4674; PMCID PMC1450229; 10.1073/pnas.0505959103
• Price-Whelan, Alexa and Dietrich, Lars E. P., et el. (2006) Rethinking 'secondary' metabolism: physiological roles for phenazine antibiotics; Nature Chemical Biology; Vol. 2; No. 2; 71-78; 10.1038/nchembio764
• Komeili, Arash and Li, Zhou, et el. (2006) Magnetosomes Are Cell Membrane Invaginations Organized by the Actin-Like Protein MamK; Science; Vol. 311; No. 5758; 242-245; 10.1126/science.1123231
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• Lee, Anthea K. and Buehler, Martin G., et el. (2006) Influence of a dual-species biofilm on the corrosion of mild steel; Corrosion Science; Vol. 48; No. 1; 165-178; 10.1016/j.corsci.2004.11.013
• Newman, Dianne K. (2006) Bacteria Are Beautiful; Engineering and Science; Vol. 69; No. 2; 8-15
• Kappler, Andreas and Pasquero, Claudia, et el. (2005) Deposition of banded iron formations by anoxygenic phototrophic Fe(II)-oxidizing bacteria; Geology; Vol. 33; No. 11; 865-868; 10.1130/G21658.1
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• Kappler, A. and Schink, B., et el. (2005) Fe(III) mineral formation and cell encrustation by the nitrate-dependent Fe(II)-oxidizer strain BoFeN1; Geobiology; Vol. 3; No. 4; 235-245; 10.1111/j.1472-4669.2006.00056.x
• Lies, Douglas P. and Hernandez, Maria E., et el. (2005) Shewanella oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact under Conditions Relevant for Biofilms; Applied and Environmental Microbiology; Vol. 71; No. 8; 4414-4426; PMCID PMC1183279; 10.1128/AEM.71.8.4414-4426.2005
• Jiao, Yongqin and Kappler, Andreas, et el. (2005) Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe(II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1; Applied and Environmental Microbiology; Vol. 71; No. 8; 4487-4496; PMCID PMC1183355; 10.1128/AEM.71.8.4487-4496.2005
• Konhauser, K. O. and Newman, D. K., et el. (2005) The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations; Geobiology; Vol. 3; No. 3; 167-177; 10.1111/j.1472-4669.2005.00055.x
• Gralnick, Jeffrey A. and Brown, C. Titus, et el. (2005) Anaerobic regulation by an atypical Arc system in Shewanella oneidensis; Molecular Microbiology; Vol. 56; No. 5; 1347-1357; 10.1111/j.1365-2958.2005.04628.x
• Bosak, Tanja and Newman, Dianne K. (2005) Microbial Kinetic Controls on Calcite Morphology in Supersaturated Solutions; Journal of Sedimentary Research; Vol. 75; No. 2; 190-199; 10.2110/jsr.2005.015
• Croal, Laura R. and Gralnick, Jeffrey A., et el. (2004) The genetics of geochemistry; Annual Review of Genetics; Vol. 38; 175-202; 10.1146/annurev.genet.38.072902.091138
• Malasarn, D. and Saltikov, C. W., et el. (2004) arrA Is a Reliable Marker for As(V) Respiration; Science; Vol. 306; No. 5695; 455-455; 10.1126/science.1102374
• Bosak, Tanja and Souza-Egipsy, Virginia, et el. (2004) Micrometer-scale porosity as a biosignature in carbonate crusts; Geology; Vol. 32; No. 9; 781-784; 10.1130/G20681.1
• Bosak, T. and Souza-Egipsy, V., et el. (2004) A laboratory model of abiotic peloid formation; Geobiology; Vol. 2; No. 3; 189-198; 10.1111/j.1472-4677.2004.00031.x
• Komeili, Arash and Vali, Hojatollah, et el. (2004) Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 101; No. 11; 3839-3844; PMCID PMC374331; 10.1073/pnas.0400391101
• Croal, Laura R. and Johnson, Clark M., et el. (2004) Iron isotope fractionation by Fe(II)-oxidizing photoautotrophic bacteria; Geochimica et Cosmochimica Acta; Vol. 68; No. 6; 1227-1242; 10.1016/j.gca.2003.09.011
• Kappler, Andreas and Newman, Dianne K. (2004) Formation of Fe(III)-minerals by Fe(II)-oxidizing photoautotrophic bacteria; Geochimica et Cosmochimica Acta; Vol. 68; No. 6; 1217-1226; 10.1016/j.gca.2003.09.006
• Hernandez, Maria E. and Kappler, Andreas, et el. (2004) Phenazines and Other Redox-Active Antibiotics Promote Microbial Mineral Reduction; Applied and Environmental Microbiology; Vol. 70; No. 2; 921-928; PMCID PMC348881; 10.1128/AEM.70.2.921-928.2004
• Saltikov, Chad W. and Newman, Dianne K. (2003) Genetic identification of a respiratory arsenate reductase; Proceedings of the National Academy of Sciences of the United States of America; Vol. 100; No. 19; 10983-10988; PMCID PMC196913; 10.1073/pnas.1834303100
• Lee, A. K. and Newman, D. K. (2003) Microbial iron respiration: impacts on corrosion processes; Applied Microbiology and Biotechnology; Vol. 62; No. 2-3; 134-139; 10.1007/s00253-003-1314-7
• Bosak, Tanja and Newman, Dianne K. (2003) Microbial nucleation of calcium carbonate in the Precambrian; Geology; Vol. 31; No. 7; 577-580; 10.1130/0091-7613(2003)031<0577:MNOCCI>2.0.CO;2
• Saltikov, Chad W. and Cifuentes, Ana, et el. (2003) The ars Detoxification System Is Advantageous but Not Required for As(V) Respiration by the Genetically Tractable Shewanella Species Strain ANA-3; Applied and Environmental Microbiology; Vol. 69; No. 5; 2800-2809; PMCID PMC154534; 10.1128/AEM.69.5.2800-2809.2003
• Newman, Dianne K. and Banfield, Jillian F. (2002) Geomicrobiology: How Molecular-Scale Interactions Underpin Biogeochemical Systems; Science; Vol. 296; No. 5570; 1071-1077; 10.1126/science.1010716
• Shyu, J. Bruce H. and Lies, Douglas P., et el. (2002) Protective Role of tolC in Efflux of the Electron Shuttle Anthraquinone-2,6-Disulfonate; Journal of Bacteriology; Vol. 184; No. 6; 1806-1810; PMCID PMC134904; 10.1128/JB.184.6.1806-1810.2002
• Dubiel, M. and Hsu, C. H., et el. (2002) Microbial Iron Respiration Can Protect Steel from Corrosion; Applied and Environmental Microbiology; Vol. 68; No. 3; 1440-1445; PMCID PMC123774; 10.1128/AEM.68.3.1440-1445.2002
• Salmassi, Tina M. and Venkateswaren, Kasthuri, et el. (2002) Oxidation of Arsenite by Agrobacterium albertimagni, AOL15, sp. nov., Isolated from Hot Creek, California; Geomicrobiology Journal; Vol. 19; No. 1; 53-66; 10.1080/014904502317246165
• Hernandez, M. E. and Newman, D. K. (2001) Extracellular electron transfer; Cellular and Molecular Life Sciences; Vol. 58; No. 11; 1562-1571; 10.1007/PL00000796
• Newman, Dianne K. (2001) How Bacteria Respire Minerals; Science; Vol. 292; No. 5520; 1312-1313; 10.1126/science.1060572
• Newman, Dianne K. and Kolter, Roberto (2000) A role for excreted quinones in extracellular electron transfer; Nature; Vol. 405; No. 6782; 94-97; 10.1038/35011098
• Newman, Dianne K. and Ahmann, Dianne, et el. (1998) A brief review of microbial arsenate respiration; Geomicrobiology Journal; Vol. 15; No. 4; 255-268; 10.1080/01490459809378082
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