Newman, Dianne
Squyres, Georgia R and Newman, Dianne (2024) Biofilms as more than the sum of their parts: lessons from developmental biology ; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
Flamholz, Avi I. and Goldford, Joshua E., et el. (2024) Annotation-free prediction of microbial dioxygen utilization ; mSystems; e00763-24; 10.1128/msystems.00763-24
Zhang, Oumeng and Alcalde, Reinaldo E., et el. (2024) Investigating 3D microbial community dynamics of the rhizosphere using quantitative phase and fluorescence microscopy ; Proceedings of the National Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
Wang, Renée Z. and Lonergan, Zachery R., et el. (2024) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia ; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; e2319960121; 10.1073/pnas.2319960121
Kim, Jane H. and Dong, Julianna, et el. (2024) Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity ; Antioxidants; Vol. 13; No. 6; 655; PMCID PMC11200925; 10.3390/antiox13060655
Tsypin, Lev M. Z. and Saunders, Scott H., et el. (2024) Genetically dissecting the electron transport chain of a soil bacterium reveals a generalizable mechanism for biological phenazine-1-carboxylic acid oxidation ; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
Magkiriadou, Sofia and Stepp, Willi L., et el. (2024) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa ; Proceedings of the National Academy of Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
Zhang, Irene H. and Borer, Benedict, et el. (2024) Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen-deficient zones with diverse metabolic potential ; mBio; e02918-23; 10.1128/mbio.02918-23
Flamholz, Avi I. and Goyal, Akshit, et el. (2024) The proteome is a terminal electron acceptor ; PMCID PMC10862836; 10.1101/2024.01.31.578293
Kim, Jane H. and Spero, Melanie, et el. (2024) Targeting Anaerobic Respiration in Pseudomonas aeruginosa with Chlorate Improves Healing of Chronic Wounds ; Advances in Wound Care; Vol. 13; No. 2; 53-69; 10.1089/wound.2023.0036
Larsson, Elin M. and Murray, Richard M., et el. (2024) Engineering the Soil Bacterium Pseudomonas synxantha 2–79 into a Ratiometric Bioreporter for Phosphorus Limitation ; ACS Synthetic Biology; 10.1021/acssynbio.3c00642
Wang, Renée Z. and Lonergan, Zachery R., et el. (2023) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia ; PMCID PMC10592819; 10.1101/2023.10.13.562248
Thalhammer, Korbinian O. and Newman, Dianne K. (2023) A phenazine-inspired framework for identifying biological functions of microbial redox-active metabolites ; Current Opinion in Chemical Biology; Vol. 75; Art. No. 102320; 10.1016/j.cbpa.2023.102320
Jiménez Otero, Fernanda and Newman, Dianne K., et el. (2023) Pyocyanin-dependent electrochemical inhibition of Pseudomonas aeruginosa biofilms is synergistic with antibiotic treatment ; mBio; Vol. 14; No. 4; e0070223; PMCID PMC10470778; 10.1128/mbio.00702-23
Ciemniecki, John A. and Newman, Dianne K. (2023) NADH dehydrogenases are the predominant phenazine reductases in the electron transport chain of Pseudomonas aeruginosa ; Molecular Microbiology; Vol. 119; No. 5; 560-573; PMCID PMC11129870; 10.1111/mmi.15049
McRose, Darcy L. and Liang, Jinyang, et el. (2023) The chemical ecology of coumarins and phenazines affects iron acquisition by pseudomonads ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 14; Art. No. e2217951120; PMCID PMC10083548; 10.1073/pnas.2217951120
Jiménez Otero, Fernanda and Newman, Dianne K., et el. (2023) Electrochemical disruption of extracellular electron transfer inhibits Pseudomonas aeruginosa cell survival within biofilms and is synergistic with antibiotic treatment ; 10.1101/2022.09.15.508205
Flamholz, Avi I. and Saccomano, Samuel, et el. (2022) Optical O₂ Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria ; mBio; Vol. 13; No. 6; Art. No. e0207622; PMCID PMC9765510; 10.1128/mbio.02076-22
Wilbert, Steven A. and Newman, Dianne K. (2022) The contrasting roles of nitric oxide drive microbial community organization as a function of oxygen presence ; Current Biology; Vol. 32; No. 24; 5221-5234.e4; PMCID PMC9772256; 10.1016/j.cub.2022.10.008
Spero, Melanie A. and Jones, Jeff, et el. (2022) Mechanisms of chlorate toxicity and resistance in Pseudomonas aeruginosa ; Molecular Microbiology; Vol. 118; No. 4; 321-335; PMCID PMC9589919; 10.1111/mmi.14972
Flamholz, Avi I. and Saccomano, Samuel, et el. (2022) Optical O₂ sensors also respond to redox active molecules commonly secreted by bacteria ; 10.1101/2022.08.08.503264
Tumasyan, A. and Adam, W., et el. (2022) Search for Resonances Decaying to Three W Bosons in Proton-Proton Collisions at √s=13TeV ; Physical Review Letters; Vol. 129; No. 2; 021802; 10.1103/physrevlett.129.021802
Tookmanian, Elise and Junghans, Lisa, et el. (2022) Hopanoids Confer Robustness to Physicochemical Variability in the Niche of the Plant Symbiont Bradyrhizobium diazoefficiens ; Journal of Bacteriology; Vol. 204; No. 7; jb.00442-21; PMCID PMC9295548; 10.1128/jb.00442-21
Livingston, Jadzia and Spero, Melanie A., et el. (2022) Visualization of mRNA Expression in Pseudomonas aeruginosa Aggregates Reveals Spatial Patterns of Fermentative and Denitrifying Metabolism ; Applied and Environmental Microbiology; Vol. 88; No. 11; Art. No. aem.00439-22; 10.1128/aem.00439-22
Meirelles, Lucas A. and Newman, Dianne K. (2022) Phenazines and toxoflavin act as interspecies modulators of resilience to diverse antibiotics ; Molecular Microbiology; Vol. 117; No. 6; 1384-1404; PMCID PMC10249331; 10.1111/mmi.14915
Flamholz, Avi I. and Newman, Dianne K. (2022) Microbial communities: The metabolic rate is the trait ; Current Biology; Vol. 32; No. 5; R215-R218; 10.1016/j.cub.2022.02.002
Perry, Elena K. and Meirelles, Lucas A., et el. (2022) From the soil to the clinic: the impact of microbial secondary metabolites on antibiotic tolerance and resistance ; Nature Reviews Microbiology; Vol. 20; No. 3; 129-142; PMCID PMC8857043; 10.1038/s41579-021-00620-w
Perry, Elena K. and Newman, Dianne K. (2022) Prevalence and Correlates of Phenazine Resistance in Culturable Bacteria from a Dryland Wheat Field ; Applied and Environmental Microbiology; Vol. 88; No. 6; Art. No. e02320-21; PMCID PMC8939311; 10.1128/aem.02320-21
Dahlstrom, Kurt M. and Newman, Dianne K. (2022) Soil bacteria protect fungi from phenazines by acting as toxin sponges ; Current Biology; Vol. 32; No. 2; 275-288; 10.1016/j.cub.2021.11.002
Magkiriadou, S. and Habel, A., et el. (2022) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa ; 10.1101/2021.12.23.473106
Wilbert, Steven A. and Newman, Dianne K. (2021) The contrasting roles of nitric oxide drive microbial community organization as a function of oxygen presence ; 10.1101/2021.12.09.472001
O'Toole, George A. and Crabbé, Aurélie, et el. (2021) Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions ; mBio; Vol. 12; No. 5; Art. No. mBio.01763-21; PMCID PMC8546538; 10.1128/mbio.01763-21
Dar, Daniel and Dar, Nina, et el. (2021) Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution ; Science; Vol. 373; No. 6556; Art. No. eabi4882; PMCID PMC8454218; 10.1126/science.abi4882
Jiménez Otero, Fernanda and Chadwick, Grayson L., et el. (2021) Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters ; Applied and Environmental Microbiology; Vol. 87; No. 17; Art. No. AEM.00706-21; PMCID PMC8357294; 10.1128/aem.00706-21
Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid Oxidation by Citrobacter portucalensis MBL ; mBio; Vol. 12; No. 4; Art. No. e02265-21; 10.1128/mBio.02265-21
Tookmanian, Elise M. and Belin, Brittany J., et el. (2021) The role of hopanoids in fortifying rhizobia against a changing climate ; Environmental Microbiology; Vol. 23; No. 6; 2906-2918; 10.1111/1462-2920.15594
Kim, Jane H. and Spero, Melanie, et el. (2021) Chlorate And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And Lead To Healing Of Chronic Wounds ; Wound Repair and Regeneration; Vol. 29; No. 3; A44-A45; 10.1111/wrr.12921
Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge ; 10.1101/2021.03.28.437412
VanDrisse, Chelsey M. and Lipsh-Sokolik, Rosalie, et el. (2021) Computationally designed pyocyanin demethylase acts synergistically with tobramycin to kill recalcitrant Pseudomonas aeruginosa biofilms ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 12; Art. No. e2022012118; PMCID PMC8000102; 10.1073/pnas.2022012118
Piddini, Eugenia and Shalek, Alex K., et el. (2021) How are methodological developments enabling insights into cell behavior in cellular communities? ; Cell Systems; Vol. 12; No. 3; 207-209; 10.1016/j.cels.2021.02.005
Meirelles, Lucas A. and Perry, Elena K., et el. (2021) Bacterial defenses against a natural antibiotic promote collateral resilience to clinical antibiotics ; PLoS Biology; Vol. 19; No. 3; Art. No. e3001093; 10.1371/journal.pbio.3001093
McRose, Darcy L. and Newman, Dianne K. (2021) Redox-active antibiotics enhance phosphorus bioavailability ; Science; Vol. 371; No. 6533; 1033-1037; PMCID PMC8051141; 10.1126/science.abd1515
Newman, Dianne K. and Costa, Kyle C. (2021) Phenazine degrading agents and related compositions, methods and systems for interfering with viability of bacteria
Mickol, Rebecca L. and Louyakis, Artemis S., et el. (2021) Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR ; Microbiology Resource Announcements; Vol. 10; No. 1; Art. No. e01302-20; 10.1128/mra.01302-20
Tsypin, Lev M. and Newman, Dianne K. (2020) Bidirectional redox cycling of phenazine-1-carboxylic acid by Citrobacter portucalensis MBL drives increased nitrate reduction ; 10.1101/2020.11.23.395335
Dahlstrom, Kurt M. and McRose, Darcy L., et el. (2020) Keystone metabolites of crop rhizosphere microbiomes ; Current Biology; Vol. 30; No. 19; R1131-R1137; PMCID PMC8059773; 10.1016/j.cub.2020.08.005
Dar, Daniel and Thomashow, Linda S., et el. (2020) Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes ; eLife; Vol. 2020; No. 9; Art. No. e59726; 10.7554/eLife.59726
Saunders, Scott H. and Tse, Edmund C. M., et el. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms ; Cell; Vol. 182; No. 4; 919-932; PMCID PMC7457544; 10.1016/j.cell.2020.07.006
Tsypin, Lev M. and Saunders, Scott H., et el. (2020) Draft Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter portucalensis Strain MBL ; Microbiology Resource Announcements; Vol. 9; No. 32; Art. No. e00695-20; PMCID PMC7409854; 10.1128/mra.00695-20
Ciemniecki, John A. and Newman, Dianne K. (2020) The potential for redox-active metabolites (RAMs) to enhance or unlock anaerobic survival metabolisms in aerobes ; Journal of Bacteriology; Vol. 202; No. 11; Art. No. e00797-19; PMCID PMC7221258; 10.1128/jb.00797-19
Gallego-Hernandez, A. L. and DePas, W. H., et el. (2020) Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 20; 11010-11017; PMCID PMC7245069; 10.1073/pnas.1916571117
Basta, David W. and Angeles-Albores, David, et el. (2020) Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 8; 4358-4367; PMCID PMC7049150; 10.1073/pnas.1912082117
Glasser, Nathaniel R. and Hunter, Ryan C., et el. (2019) Refinement of metabolite detection in cystic fibrosis sputum reveals heme correlates with lung function decline ; PLoS ONE; Vol. 14; No. 12; Art. No. e0226578; PMCID PMC6919587; 10.1371/journal.pone.0226578
Jorth, Peter and Spero, Melanie A., et el. (2019) Quantitative Visualization of Gene Expression in Mucoid and Nonmucoid Pseudomonas aeruginosa Aggregates Reveals Localized Peak Expression of Alginate in the Hypoxic Zone ; mBio; Vol. 10; No. 6; Art. No. e02622-19; PMCID PMC6918079; 10.1128/mbio.02622-19
DePas, W. and Bergkessel, M., et el. (2019) Nontuberculous Mycobacterial Aggregation is Regulated by C:N Balance ; Pediatric Pulmonology; Vol. 54; No. S2; S310; 10.1002/ppul.22495
Spero, M. A. and Silveira, C. B., et el. (2019) Chlorate's Potential as a Pro-Drug for Killing Antibiotic-Tolerant Pathogens in the Cystic Fibrosis Lung ; Pediatric Pulmonology; Vol. 54; No. S2; S281; 10.1002/ppul.22495
Belin, Brittany J. and Tookmanian, Elise T., et el. (2019) Extended hopanoid loss reduces bacterial motility and surface attachment, and leads to heterogeneity in root nodule growth kinetics in a Bradyrhizobium-Aeschynomene symbiosis ; Molecular Plant-Microbe Interactions; Vol. 32; No. 10; 1415-1428; 10.1094/MPMI-04-19-0111-R
Ericson, Charles F. and Eisenstein, Fabian, et el. (2019) A contractile injection system stimulates tubeworm metamorphosis by translocating a proteinaceous effector ; eLife; Vol. 8; Art. No. e46845; PMCID PMC6748791; 10.7554/elife.46845
Bergkessel, Megan and Babin, Brett M., et el. (2019) The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa ; Molecular Microbiology; Vol. 112; No. 3; 992-1009; PMCID PMC6736744; 10.1111/mmi.14337
DePas, William H. and Bergkessel, Megan, et el. (2019) Aggregation of nontuberculous mycobacteria is regulated by carbon:nitrogen balance ; mBio; Vol. 10; No. 4; Art. No. e01715-19; PMCID PMC6692514; 10.1128/mBio.01715-19
Perry, Elena K. and Newman, Dianne K. (2019) The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens ; Molecular Microbiology; Vol. 112; No. 1; 199-218; PMCID PMC6615960; 10.1111/mmi.14263
Kee, H. Lynn and Mikheyeva, Irina V., et el. (2019) Draft Genome Sequence of the Iridescent Marine Bacterium Tenacibaculum discolor Strain IMLK18 ; Microbiology Resource Announcements; Vol. 8; No. 5; Art. No. e01683-18; PMCID PMC6357648; 10.1128/mra.01683-18
Neubauer, Cajetan and Sessions, Alex L., et el. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics ; Rapid Communications in Mass Spectrometry; Vol. 32; No. 24; 2129-2140; 10.1002/rcm.8288
Meirelles, Lucas A. and Newman, Dianne K. (2018) Both toxic and beneficial effects of pyocyanin contribute to the lifecycle of Pseudomonas aeruginosa ; Molecular Microbiology; Vol. 110; No. 6; 995-1010; PMCID PMC6281804; 10.1111/mmi.14132
Neubauer, Cajetan and Kasi, Ajay S., et el. (2018) Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum ; Journal of Bacteriology; Vol. 200; No. 24; Art. No. e00365-18; PMCID PMC6256016; 10.1128/jb.00365-18
Saunders, Scott H. and Newman, Dianne K. (2018) Extracellular Electron Transfer Transcends Microbe-Mineral Interactions ; Cell Host & Microbe; Vol. 24; No. 5; 611-613; 10.1016/j.chom.2018.10.018
Neubauer, Cajetan and Sweredoski, Michael J., et el. (2018) Scanning the isotopic structure of molecules by tandem mass spectrometry ; International Journal of Mass Spectrometry; Vol. 434; 276-286; 10.1016/j.ijms.2018.08.001
Belin, Brittany J. and Tookmanian, Elise T., et el. (2018) Extended hopanoid lipids promote bacterial motility, surface attachment, and root nodule development in the Bradyrhizobium diazoefficiens-Aeschynomene afraspera symbiosis ; 10.1101/423301
Spero, Melanie A. and Newman, Dianne K. (2018) Chlorate Specifically Targets Oxidant-Starved, Antibiotic-Tolerant Populations of Pseudomonas aeruginosa Biofilms ; mBio; Vol. 9; No. 5; Art. No. e01400-18; PMCID PMC6156191; 10.1128/mbio.01400-18
Glasser, Nathaniel R. and Oyala, Paul H., et el. (2018) Structural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformations ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 37; E8614-E8623; PMCID PMC6140538; 10.1073/pnas.1807984115
Newman, Dianne K. (2018) A personal tribute to Terry Beveridge ; Canadian Journal of Microbiology; Vol. 64; No. 9; ix-xi; 10.1139/cjm-2017-0515
Jorth, P. and Spero, M. A., et el. (2018) In situ gene expression analysis of mucoid P. aeruginosa biofilms suggests that alginate expression is restricted to microaerobic regions of the biofilm ; Pediatric Pulmonology; Vol. 53; No. S2; Art. No. 462; 10.1002/ppul.24152
Zhalnina, Kateryna and Zengler, Karsten, et el. (2018) Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry ; mBio; Vol. 9; No. 4; Art. No. e01175-18; PMCID PMC6050955; 10.1128/mBio.01175-18
Faure, E. and Jorth, P., et el. (2018) Intracellular Persistence of Pseudomonas Aeruginosa in Airway Epithelial Cells and in Cystic Fibrosis Lung ; American Journal of Respiratory and Critical Care Medicine; Vol. 197; Art. No. A6262
Belin, Brittany J. and Busset, Nicolas, et el. (2018) Hopanoid lipids: from membranes to plant–bacteria interactions ; Nature Reviews Microbiology; Vol. 16; No. 5; 304-315; PMCID PMC6087623; 10.1038/nrmicro.2017.173
Costa, Kyle C. and Moskatel, Leon S., et el. (2018) PhdA catalyzes the first step of phenazine-1-carboxylic acid degradation in Mycobacterium fortuitum ; Journal of Bacteriology; Vol. 200; No. 10; Art. No. e00763-17; PMCID PMC5915785; 10.1128/JB.00763-17
Saunders, Scott H. and Yates, Matthew D., et el. (2018) Probing Phenazine Electron Transfer and Retention in Pseudomonas Aeruginosa Biofilms ; Biophysical Journal; Vol. 114; No. 3; 28a; 10.1016/j.bpj.2017.11.198
Basta, David W. and Bergkessel, Megan, et el. (2017) Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa ; mBio; Vol. 8; No. 6; Art. No. e01170; PMCID PMC5705914; 10.1128/mBio.01170-17
Babin, Brett M. and Atangcho, Lydia, et el. (2017) Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms ; mBio; Vol. 8; No. 5; Art. No. e01593-17; PMCID PMC5654934; 10.1128/mBio.01593-17
DePas, W. and Bergkessel, M., et el. (2017) Aggregation of Nontuberculous Mycobacteria in Vitro and in Situ ; 10.1002/ppul.23840
Bergkessel, M. and Newman, D. K., et el. (2017) SutA is a Global Transcriptional Regulator Operating during Slow Growth in Pseudomonas Aeruginosa ; Pediatric Pulmonology; Vol. 52; No. S47; S366-S367; 10.1002/ppul.23840
Jorth, P. and Newman, D. K. (2017) Clarifying the Intracellular and Extracellular Lifestyles of CF Microbes in Three Dimensions ; 10.1002/ppul.23840
Glasser, Nathaniel R. and Saunders, Scott H., et el. (2017) The Colorful World of Extracellular Electron Shuttles ; Annual Review of Microbiology; Vol. 71; 731-751; PMCID PMC5679407; 10.1146/annurev-micro-090816-093913
Kasi, Ajay S. and Neubauer, Cajetan, et el. (2017) Bacterial Growth Rate In Cystic Fibrosis Pulmonary Exacerbation ; American Journal of Respiratory and Critical Care Medicine; Vol. 195; Art. No. A4856
Glasser, Nathaniel R. and Wang, Benjamin X., et el. (2017) The pyruvate and α-ketoglutarate dehydrogenase complexes of Pseudomonas aeruginosa catalyze pyocyanin and phenazine-1-carboxylic acid reduction via the subunit dihydrolipoamide dehydrogenase ; Journal of Biological Chemistry; Vol. 292; No. 13; 5593-5607; PMCID PMC5392700; 10.1074/jbc.M116.772848
Racki, Lisa R. and Tocheva, Elitza I., et el. (2017) Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 12; E2440-E2449; PMCID PMC5373386; 10.1073/pnas.1615575114
Costa, Kyle C. and Glasser, Nathaniel R., et el. (2017) Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms ; Science; Vol. 355; No. 6321; 170-173; PMCID PMC5303695; 10.1126/science.aag3180
Ricci, J. N. and Morton, R., et el. (2017) Hopanoids play a role in stress tolerance and nutrient storage in the cyanobacterium Nostoc punctiforme ; Geobiology; Vol. 15; No. 1; 173-183; 10.1111/gbi.12204
Newman, D. K. (2016) Primary functions for "secondary" metabolites in microbial communities ; Molecular Biology of the Cell; Vol. 27; No. 25; S13; 10.1091/mbc.E16-10-0736
Choi, Harry M. T. and Calvert, Colby R., et el. (2016) Mapping a multiplexed zoo of mRNA expression ; Development; Vol. 143; No. 19; 3632-3637; PMCID PMC5087610; 10.1242/dev.140137
Newman, Dianne (2016) Pathogen Growth Rates in CF Sputum are Slow and Heterogeneous: Implications for Research and Treatment Strategies ; Pediatric Pulmonology; Vol. 51; No. S45; 162; 10.1002/ppul.23575
DePas, William H. and Starwalt-Lee, Ruth, et el. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling ; mBio; Vol. 7; No. 5; e00796-16; PMCID PMC5040109; 10.1128/mBio.00796-16
Shikuma, Nicholas J. and Antoshechkin, Igor, et el. (2016) Stepwise metamorphosis of the tubeworm Hydroides elegans is mediated by a bacterial inducer and MAPK signaling ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 36; 10097-10102; PMCID PMC5018781; 10.1073/pnas.1603142113
Bergkessel, Megan and Basta, David W., et el. (2016) The physiology of growth arrest: uniting molecular and environmental microbiology ; Nature Reviews Microbiology; Vol. 14; No. 9; 549-562; PMCID PMC10069271; 10.1038/nrmicro.2016.107
Newman, Dianne K. and Neubauer, Cajetan, et el. (2016) Cellular and Molecular Biological Approaches to Interpreting Ancient Biomarkers ; Annual Review of Earth and Planetary Sciences; Vol. 44; 493-522; 10.1146/annurev-earth-050212-123958
Babin, Brett M. and Bergkessel, Megan, et el. (2016) SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 5; E597-E605; PMCID PMC4747698; 10.1073/pnas.1514412113
Kopf, Sebastian H. and Sessions, Alex L., et el. (2016) Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 2; E110-E116; PMCID PMC4720290; 10.1073/pnas.1512057112
Kreamer, Naomi N. and Phillips, Rob, et el. (2015) Predicting the impact of promoter variability on regulatory outputs ; Scientific Reports; Vol. 5; Art. No. 18238; PMCID PMC4682146; 10.1038/srep18238
Mariita, Richard M. and Bhatnagar, Srijak, et el. (2015) Complete Genome Sequence of Streptomyces sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts ; Genome Announcements; Vol. 3; No. 6; Art. No. e01506-15; PMCID PMC4698389; 10.1128/genomeA.01506-15
Mariita, Richard M. and Bhatnagar, Srijak, et el. (2015) Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts ; Genome Announcements; Vol. 3; No. 6; Art. No. e01504-15; PMCID PMC4698388; 10.1128/genomeA.01504-15
Costa, Kyle C. and Bergkessel, Megan, et el. (2015) Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity ; mBio; Vol. 6; No. 6; Art. No. e01520-15; PMCID PMC4626857; 10.1128/mBio.01520-15
Kulkarni, Gargi and Busset, Nicolas, et el. (2015) Specific hopanoid classes differentially affect free-living and symbiotic states of Bradyrhizobium diazoefficiens ; mBio; Vol. 6; No. 5; e01251-15; PMCID PMC4620461; 10.1128/mBio.01251-15
Coleman, Maureen L. and Newman, Dianne K. (2015) Molecular Methods in Geomicrobiology ; ISBN 9781466592407; Ehrlich's Geomicrobiology, Sixth Edition; 187-207; 10.1201/b19121-10
Neubauer, C. and Dalleska, N. F., et el. (2015) Lipid remodeling in Rhodopseudomonas palustris TIE-1 upon loss of hopanoids and hopanoid methylation ; Geobiology; Vol. 13; No. 5; 443-453; 10.1111/gbi.12143
Cowley, Elise S. and Kopf, Sebastian H., et el. (2015) Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation ; mBio; Vol. 6; No. 4; Art. No. e00767; PMCID PMC4551978; 10.1128/mBio.00767-15
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Newman, Dianne K. (2012) In Pursuit of Billion-Year-Old Rosetta Stones ; ISBN 978-1-55581-540-0; Microbes and Evolution: The World That Darwin Never Saw; 209-215; 10.1128/9781555818470.ch29
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Newman, Dianne K. and Coleman, Maureen L. (2011) Where reductionism meets complexity: a call for growth in the study of non-growth ; Environmental Microbiology Reports; Vol. 3; No. 1; 14-15; 10.1111/j.1758-2229.2010.00236.x
Bose, Arpita and Newman, Dianne K. (2011) Regulation of the phototrophic iron oxidation (pio) genes in Rhodopseudomonas palustris TIE-1 is mediated by the global regulator, FixK ; Molecular Microbiology; Vol. 79; No. 1; 63-75; 10.1111/j.1365-2958.2010.07430.x
Bose, Arpita and Kopf, Sebastian, et el. (2011) From Geocycles to Genomes and Back ; ISBN 9781613444030; Microbial metal and metalloid metabolism: advances and applications; 13-38
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Kappler, A. and Johnson, C. M., et el. (2010) Evidence for equilibrium iron isotope fractionation by nitrate-reducing iron(II)-oxidizing bacteria ; Geochimica et Cosmochimica Acta; Vol. 74; No. 10; 2826-2842; PMCID PMC2873596; 10.1016/j.gca.2010.02.017
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Poulain, Alexandre J. and Newman, Dianne K. (2009) Rhodobacter capsulatus Catalyzes Light-Dependent Fe(II) Oxidation under Anaerobic Conditions as a Potential Detoxification Mechanism ; Applied and Environmental Microbiology; Vol. 75; No. 21; 6639-6646; PMCID PMC2772431; 10.1128/AEM.00054-09
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Gralnick, Jeffrey A. and Newman, Dianne K. (2007) Extracellular respiration ; Molecular Microbiology; Vol. 65; No. 1; 1-11; PMCID PMC2804852; 10.1111/j.1365-2958.2007.05778.x
Bosak, T. and Greene, S. E., et el. (2007) A likely role for anoxygenic photosynthetic microbes in the formation of ancient stromatolites ; Geobiology; Vol. 5; No. 2; 119-126; PMCID PMC2947360; 10.1111/j.1472-4669.2007.00104.x
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Lee, Anthea K. and Buehler, Martin G., et el. (2006) Influence of a dual-species biofilm on the corrosion of mild steel ; Corrosion Science; Vol. 48; No. 1; 165-178; 10.1016/j.corsci.2004.11.013
Newman, Dianne K. (2006) Bacteria Are Beautiful ; Engineering and Science; Vol. 69; No. 2; 8-15
Saltikov, Chad W. and Wildman, Richard A., Jr., et el. (2005) Expression Dynamics of Arsenic Respiration and Detoxification in Shewanella sp. Strain ANA-3 ; Journal of Bacteriology; Vol. 187; No. 21; 7390-7396; PMCID PMC1272973; 10.1128/JB.187.21.7390-7396.2005
Kappler, Andreas and Pasquero, Claudia, et el. (2005) Deposition of banded iron formations by anoxygenic phototrophic Fe(II)-oxidizing bacteria ; Geology; Vol. 33; No. 11; 865-868; 10.1130/G21658.1
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Konhauser, K. O. and Newman, D. K., et el. (2005) The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations ; Geobiology; Vol. 3; No. 3; 167-177; 10.1111/j.1472-4669.2005.00055.x
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Bosak, Tanja and Newman, Dianne K. (2005) Microbial Kinetic Controls on Calcite Morphology in Supersaturated Solutions ; Journal of Sedimentary Research; Vol. 75; No. 2; 190-199; 10.2110/jsr.2005.015
Newman, Dianne K. and Gralnick, Jeffrey A. (2005) What Genetics Offers Geobiology ; ISBN 9780939950713; Molecular Geomicrobiology; 9-26; 10.2138/rmg.2005.59.2
Croal, Laura R. and Gralnick, Jeffrey A., et el. (2004) The genetics of geochemistry ; Annual Review of Genetics; Vol. 38; 175-202; 10.1146/annurev.genet.38.072902.091138
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Komeili, Arash and Vali, Hojatollah, et el. (2004) Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 101; No. 11; 3839-3844; PMCID PMC374331; 10.1073/pnas.0400391101
Croal, Laura R. and Johnson, Clark M., et el. (2004) Iron isotope fractionation by Fe(II)-oxidizing photoautotrophic bacteria ; Geochimica et Cosmochimica Acta; Vol. 68; No. 6; 1227-1242; 10.1016/j.gca.2003.09.011
Kappler, Andreas and Newman, Dianne K. (2004) Formation of Fe(III)-minerals by Fe(II)-oxidizing photoautotrophic bacteria ; Geochimica et Cosmochimica Acta; Vol. 68; No. 6; 1217-1226; 10.1016/j.gca.2003.09.006
Hernandez, Maria E. and Kappler, Andreas, et el. (2004) Phenazines and Other Redox-Active Antibiotics Promote Microbial Mineral Reduction ; Applied and Environmental Microbiology; Vol. 70; No. 2; 921-928; PMCID PMC348881; 10.1128/AEM.70.2.921-928.2004
Johnson, Clark M. and Beard, Brian L., et el. (2004) Isotopic Constraints on Biogeochemical Cycling of Fe ; ISBN 0-939950-67-7; Geochemistry of Non-Traditional Stable Isotopes; 359-408; 10.2138/gsrmg.55.1.359
Saltikov, Chad W. and Newman, Dianne K. (2003) Genetic identification of a respiratory arsenate reductase ; Proceedings of the National Academy of Sciences of the United States of America; Vol. 100; No. 19; 10983-10988; PMCID PMC196913; 10.1073/pnas.1834303100
Lee, A. K. and Newman, D. K. (2003) Microbial iron respiration: impacts on corrosion processes ; Applied Microbiology and Biotechnology; Vol. 62; No. 2-3; 134-139; 10.1007/s00253-003-1314-7
Buehler, Martin G. and Kuhlman, Gregory M., et el. (2003) Planar Array REDOX Cells and pH Sensors for ISS Water Quality and Microbe Detection ; 10.4271/2003-01-2553
Bosak, Tanja and Newman, Dianne K. (2003) Microbial nucleation of calcium carbonate in the Precambrian ; Geology; Vol. 31; No. 7; 577-580; 10.1130/0091-7613(2003)031<0577:MNOCCI>2.0.CO;2
Saltikov, Chad W. and Cifuentes, Ana, et el. (2003) The ars Detoxification System Is Advantageous but Not Required for As(V) Respiration by the Genetically Tractable Shewanella Species Strain ANA-3 ; Applied and Environmental Microbiology; Vol. 69; No. 5; 2800-2809; PMCID PMC154534; 10.1128/AEM.69.5.2800-2809.2003
Newman, Dianne K. and Banfield, Jillian F. (2002) Geomicrobiology: How Molecular-Scale Interactions Underpin Biogeochemical Systems ; Science; Vol. 296; No. 5570; 1071-1077; 10.1126/science.1010716
Shyu, J. Bruce H. and Lies, Douglas P., et el. (2002) Protective Role of tolC in Efflux of the Electron Shuttle Anthraquinone-2,6-Disulfonate ; Journal of Bacteriology; Vol. 184; No. 6; 1806-1810; PMCID PMC134904; 10.1128/JB.184.6.1806-1810.2002
Dubiel, M. and Hsu, C. H., et el. (2002) Microbial Iron Respiration Can Protect Steel from Corrosion ; Applied and Environmental Microbiology; Vol. 68; No. 3; 1440-1445; PMCID PMC123774; 10.1128/AEM.68.3.1440-1445.2002
Salmassi, Tina M. and Venkateswaren, Kasthuri, et el. (2002) Oxidation of Arsenite by Agrobacterium albertimagni, AOL15, sp. nov., Isolated from Hot Creek, California ; Geomicrobiology Journal; Vol. 19; No. 1; 53-66; 10.1080/014904502317246165
Oremland, Ronald S. and Newman, Dianne K., et el. (2002) Bacterial Respiration of Arsenate and Its Significance in the Environment ; ISBN 9780824706760; Environmental Chemistry of Arsenic; 273-295
Hernandez, M. E. and Newman, D. K. (2001) Extracellular electron transfer ; Cellular and Molecular Life Sciences; Vol. 58; No. 11; 1562-1571; 10.1007/PL00000796
Newman, Dianne K. (2001) How Bacteria Respire Minerals ; Science; Vol. 292; No. 5520; 1312-1313; 10.1126/science.1060572
Newman, Dianne K. and Kolter, Roberto (2000) A role for excreted quinones in extracellular electron transfer ; Nature; Vol. 405; No. 6782; 94-97; 10.1038/35011098
Newman, Dianne K. (2000) Arsenic ; ISBN 9780122268007; Encyclopedia of Microbiology, 2nd edition; 332-338
O'Toole, George A. and Pratt, Leslie A., et el. (1999) Genetic approaches to study of biofilms ; ISBN 9780121822118; Biofilms; 91-109; 10.1016/S0076-6879(99)10008-9
Newman, Dianne K. and Ahmann, Dianne, et el. (1998) A brief review of microbial arsenate respiration ; Geomicrobiology Journal; Vol. 15; No. 4; 255-268; 10.1080/01490459809378082
Newman, Dianne K. and Kennedy, Erin K., et el. (1997) Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov. ; Archives of Microbiology; Vol. 168; No. 5; 380-388; 10.1007/s002030050512
Newman, Dianne K. and Beveridge, Terry J., et el. (1997) Precipitation of Arsenic Trisulfide by Desulfotomaculum auripigmentum ; Applied and Environmental Microbiology; Vol. 63; No. 5; 2022-2028
