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    id = "record",
    issn = "0028-0836",
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    id = "record",
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    id = "record",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316",
    id = "record",
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    journal = "Biophysical Journal",
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    journal = "Biophysical Journal",
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    title = "Skewing the Playing Field: A Single-Molecule Study on how RSS Sequence Influences Gene Segment Selection",
    journal = "Biophysical Journal",
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    title = "Musings on mechanism: quest for a quark theory of proteins?",
    journal = "FASEB Journal",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563",
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    volume = "31"
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    title = "Self-consistent theory of transcriptional control in complex regulatory architectures",
    journal = "PLOS ONE",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170717-090138223",
    id = "record",
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    doi = "10.1371/journal.pone.0179235",
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    title = "Energetic cost of building a virus",
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    title = "Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants",
    journal = "Journal of Physical Chemistry B",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170131-092637914",
    id = "record",
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    title = "The great ideas of biology: Exploration through experimentation in an undergraduate lab course",
    journal = "Molecular Biology of the Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170331-134057165",
    id = "record",
    issn = "1059-1524",
    volume = "27"
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    title = "Statistical Mechanics of Allosteric Enzymes",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784",
    id = "record",
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    title = "Design Principles of Length Control of Cytoskeletal Structures",
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    id = "record",
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    volume = "45",
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    title = "Using synthetic biology to make cells tomorrow's test tubes",
    journal = "Integrative Biology",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160311-132630114",
    id = "record",
    issn = "1757-9694",
    doi = "10.1039/C6IB00006A",
    volume = "8",
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    title = "SnapShot: Timescales in Cell Biology",
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    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-083721510",
    id = "record",
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    title = "Predicting the impact of promoter variability on regulatory outputs",
    journal = "Scientific Reports",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620",
    id = "record",
    issn = "2045-2322",
    doi = "10.1038/srep18238",
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    title = "Theory in Biology: Figure 1 or Figure 7?",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20151130-110111581",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150810-075722055",
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    title = "Napoleon Is in Equilibrium",
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    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-100757843",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-104425641",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-091408000",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140103-091544508",
    id = "record",
    issn = "0028-0836",
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    volume = "101",
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    id = "record",
    issn = "0006-3495",
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    journal = "Physical Review Letters",
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    journal = "Science",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130118-102317460",
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    issn = "0036-8075",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120814-102205172",
    id = "record",
    issn = "2211-1247",
    doi = "10.1016/j.celrep.2012.06.004",
    volume = "2",
    pmcid = "PMC3616187"
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    title = "A Single-Molecule Hershey-Chase Experiment",
    journal = "Current Biology",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294",
    id = "record",
    issn = "0960-9822",
    doi = "10.1016/j.cub.2012.05.023",
    volume = "22",
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    title = "Focus on the physics of the cell membrane",
    journal = "New Journal of Physics",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120706-080343895",
    id = "record",
    issn = "1367-2630",
    doi = "10.1088/1367-2630/14/5/055021",
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    title = "Single-Cell Census of Mechanosensitive Channels in Living Bacteria",
    journal = "PLoS ONE",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120523-100035590",
    id = "record",
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    doi = "10.1371/journal.pone.0033077",
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    title = "Entropic Tension in Crowded Membranes",
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    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1002431",
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    title = "Lipid Bilayer Mechanics in a Pipette with Glass-Bilayer Adhesion",
    journal = "Biophysical Journal",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111111-151109702",
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    title = "Mechanosensitive Channels: What Can They Do and How Do They Do It?",
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    title = "Jonathan Widom (1955–2011)",
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    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110909-100811989",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/476400a",
    volume = "476"
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    title = "Comparison and Calibration of Different Reporters for Quantitative Analysis of Gene Expression",
    journal = "Biophysical Journal",
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    title = "Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR",
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    id = "record",
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    title = "Elastic energy of polyhedral bilayer vesicles",
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    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.83.061901",
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    title = "Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression",
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    id = "record",
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    doi = "10.1371/journal.pcbi.1001100",
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    title = "Morphological Phase Diagram for Lipid Membrane Domains with Entropic Tension",
    journal = "Physical Review Letters",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110324-162735185",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.106.057801",
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    title = "Transcription by the numbers redux: experiments and calculations that surprise",
    journal = "Trends in Cell Biology",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110207-083519894",
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    issn = "0962-8924",
    doi = "10.1016/j.tcb.2010.07.002",
    volume = "20",
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    title = "Minimal Bending Energies of Bilayer Polyhedra",
    journal = "Physical Review Letters",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110302-102608259",
    id = "record",
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    title = "Dynamical fluctuations in biochemical reactions and cycles",
    journal = "Physical Review E",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101004-094321543",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.82.031905",
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    title = "Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ",
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    issn = "0305-1048",
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    id = "record",
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    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.78.041901",
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    issn = "1553-7358",
    doi = "10.1371/journal.pcbi.0030081",
    volume = "3",
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    title = "Measuring Flux Distributions for Diffusion in the Small-Numbers Limit",
    journal = "Journal of Physical Chemistry B",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170526-112238161",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/jp067036j",
    volume = "111",
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    doi = "10.1002/bip.20627",
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    title = "High flexibility of DNA on short length scales probed by atomic force microscopy",
    journal = "Nature Nanotechnology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-090719819",
    id = "record",
    issn = "1748-3387",
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    title = "The effect of genome length on ejection forces in bacteriophage lambda",
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    id = "record",
    issn = "0031-9228",
    volume = "59"
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    id = "record",
    issn = "0031-9007",
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    journal = "Physical Review E",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:WIGpre05",
    id = "record",
    issn = "1063-651X",
    doi = "10.1103/PhysRevE.71.021909",
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    id = "record",
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    volume = "12"
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    title = "Force steps during viral DNA packaging?",
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    id = "record",
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    volume = "51"
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    id = "record",
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    volume = "32"
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    journal = "MRS Bulletin",
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    id = "record",
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    id = "record",
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    volume = "9"
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    journal = "International Journal of Solids and Structures",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171212-153930662",
    id = "record",
    issn = "0020-7683",
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    volume = "37"
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    volume = "7"
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    journal = "Journal of Materials Research",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:TADjmr99",
    id = "record",
    issn = "0884-2914",
    volume = "14"
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    title = "A non-local formulation of the Peierls dislocation model",
    journal = "Journal of the Mechanics and Physics of Solids",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100338338",
    id = "record",
    issn = "0022-5096",
    doi = "10.1016/S0022-5096(98)00057-X",
    volume = "46"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:MILmsmse98,
    title = "Quasicontinuum simulation of fracture at the atomic scale",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:MILmsmse98",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/6/5/008",
    volume = "6"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171213-100643529,
    title = "Quasicontinuum models of fracture and plasticity",
    journal = "Engineering Fracture Mechanics",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100643529",
    id = "record",
    issn = "0013-7944",
    doi = "10.1016/S0013-7944(98)00047-2",
    volume = "61"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:SHEprl98,
    title = "Quasicontinuum Models of Interfacial Structure and Deformation",
    journal = "Physical Review Letters",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SHEprl98",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.80.742",
    volume = "08"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160607-114810939,
    title = "Mixed Atomistic and Continuum Models of Deformation in Solids",
    journal = "Langmuir",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160607-114810939",
    id = "record",
    issn = "0743-7463",
    doi = "10.1021/la9508912",
    volume = "12"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171213-150724557,
    title = "Quasicontinuum analysis of defects in solids",
    journal = "Philosophical Magazine A",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-150724557",
    id = "record",
    issn = "0141-8610",
    doi = "10.1080/01418619608243000",
    volume = "73"
}