Rothenberg, Ellen

Combined from CaltechTHESIS committee

• Viloria Winnett, Alexander (2025) Quantitative Nucleic Acid Measurements Inform Strategies to Mitigate Viral Outbreaks; 10.7907/qe3a-a670
• Urrutia, Hugo A. (2025) Understanding Cessation of Neural Crest Migration and Onset of Gangliogenesis; 10.7907/b31p-rp50
• Wang, Jue (Phyllis) (2025) Direct Visualization of Cellular Protein Complexes in situ by Fluorescence-Guided Cryo-FIB-SEM and Cryo-ET; 10.7907/rmdd-5t54
• Perez, Andrew Alexander (2024) ChIP-DIP: a Multiplexed Method for Mapping Proteins to DNA Uncovers Combinatorics Controlling Gene Expression; 10.7907/691f-y924
• Schwartz, Morgan Sarah (2024) Accelerating Biological Discovery with Deep Learning and Spatial Optical Barcodes; 10.7907/55c7-8142
• Lee, Justin (2024) Ultrasound Control and Imaging of Cellular Immunotherapy; 10.7907/60sh-a389
• Prakash, Sharan Jagdish (2024) Experimental and Neuroinformatic Definition of Neural Circuits in Caenorhabditis elegans; 10.7907/bgvy-9p06
• Laubscher, Emily Chiu (2024) Deep Learning-Enabled Integrated Measurements of Immune Signaling in Primary Human Macrophages; 10.7907/hayp-kx45
• Zhang, Mark Guangde (2024) Bridging Sensory Perception to Developmental Decision Making in Caenorhabditis elegans; 10.7907/hf7p-aa22
• Sarma, Anish Anandsai (2023) Multicellular Control; 10.7907/kf54-fr89
• Galton, Riley (2023) Co-Option of the piRNA Pathway to Regulate Neural Crest Specification; 10.7907/9rvr-rr55
• Beeler, Suzannah Michelle (2022) Deciphering Regulation in Escherichia coli: From Genes to Genomes; 10.7907/p3rg-m937
• Tang, Weiyi (2022) Retroviral Lineage Analysis of the Vagal Neural Crest Reveals Multipotency Towards the Cardiac and Enteric Fates; 10.7907/qakz-vm04
• Koontz, Alison Lindsay (2022) Neural Crest and Placodal Cells Contributions to Cranial Sensory Development; 10.7907/30rt-s038
• Anaya, Michael Aurelio (2021) Modernization of Monoclonal Antibody Screening and Protein-interaction Assays; 10.7907/xy05-bb64
• Abedi, Mohamad (2021) Thermal Bioswitches for Non-Invasive Control of Cellular Therapies; 10.7907/z7ac-2g66
• Quintero Cadena, Porfirio (2021) Mechanism and Scaling of Eukaryotic Transcription Activation; 10.7907/m21w-8461
• Irizarry, Jihyun (2021) Temporally Changing Roles of Morphogen Dorsal in the Drosophila Early Embryo; 10.7907/t53b-vc87
• Cohen, Sarah Michelle (2021) Formation and Function of Ascarosides in the Nematodes C. elegans and C. briggsae; 10.7907/84ck-kn25
• Gandhi, Shashank (2021) Molecular Mechanisms Underlying Cardiac Neural Crest Development in Avian Embryos; 10.7907/y1e4-d090
• Takei, Yodai (2021) Integrated Spatial Genomics Reveals Organizational Principles of Single-Cell Nuclear Architecture; 10.7907/4ces-zm75
• Cohen, Alexander Armand (2021) Developing Multivalent Nanoparticle Vaccines Against Current and Future Viruses; 10.7907/r33z-kj46
• Zhou, Wen (2021) Single-Cell Analysis of Normal and Perturbed Early T-Cell Developmental Processes; 10.7907/733t-mg82
• Banerjee, Abhik Kumar (2021) Diverse Roles of RNA-protein Interactions: From Viral Antagonism to Mammalian Development; 10.7907/tfb9-n887
• Chour, William (2021) Molecular Technologies for Antigen-Based Immunity; 10.7907/z20t-nq62
• Piraner, Dan Ilya (2019) Tunable Thermal Bioswitches as a Control Modality for Next Generation Therapeutics; 10.7907/DH10-6N61
• Lee, James Siho (2019) The Genomics of Stress-Induced Life Cycle Decisions in Nematodes; 10.7907/WZ8Y-ZM04
• Shih, Pei-Yin (2019) The Ethology of Stress in Nematodes ; 10.7907/1E7G-K373
• DeSalvo, Gilberto (2018) Transcriptional Enhancer Activity of Biochemically Marked Genomic Elements; 10.7907/J73E-Y429
• Jensen, Elizabeth Hwang (2018) Elucidating the Role of O-GlcNAc Glycosylation in Neurobiology and Neurodegeneration; 10.7907/Z9JD4TZ9
• Fisher-Aylor, Katherine Irene (2017) Chromatin Topology and Transcription in Myogenesis; 10.7907/Z9K07290
• Sandler, Jeremy Edward (2017) Genome Activation and Regulation of Signaling in the Rapidly Dividing Drosophila Embryo; 10.7907/Z9K935KD
• Erkenbrack, Eric Matthew (2016) Evolution of Developmental Gene Regulatory Networks in Echinoids; 10.7907/Z95X26WZ
• Cui, Miao (2016) Refining Sea Urchin Developmental Gene Regulatory Network Models by Incorporating Wnt Signaling and Information Processed at the hox11/13b Locus; 10.7907/Z9251G6D
• Galimidi, Rachel P. (2016) Combating HIV with Novel Antibody Architectures ; 10.7907/Z9QC01FR
• Mehta, Arnav (2015) MicroRNA-132 is a Physiological Regulator of Hematopoietic Stem Cell Function and B-cell Development; 10.7907/Z9XS5SBD
• Yong, John (2015) Dynamics and Heterogeneity of Gene Expression and Epigenetic Regulation at the Single-Cell Level; 10.7907/Z9ZC80VX
• Ahmed, Alysia Ashley (2015) Structural Characterization of Pro-inflammatory and Anti-inflammatory Immunoglobulin G Fc Proteins; 10.7907/Z9GT5K33
• Ho, Margaret Ching Wai (MC) (2015) Discovery of Active Cis-Regulatory Elements and Transcription Factor Footprints in Nematodes Using Functional Genomics Approaches; 10.7907/Z9G73BVF
• Khosravi, Arya (2014) Gut Microbiota Promote Hematopoiesis to Control Bacterial Infection; 10.7907/XM07-4X53
• Tan, Frederick Eng How (2014) Brfl Post-Transcriptionally Regulates Pluripotency and Differentiation Responses Downstream of Erk MAP Kinase; 10.7907/MM53-XC23
• Kirilusha, Anthony George (2014) Transcription Factor Occupancy in Differentiating Skeletal Muscle; 10.7907/4Q24-CJ96
• Hsiao, Elaine Yih-Nien (2013) Brain, Gut and Immune Interactions in Autism Spectrum Disorder; 10.7907/DEVQ-1P16
• Del Real, Marissa Morales (2013) Analysis of a Transcriptional Network Involving PU.1, Notch, and Gata3 in the Lymphomyeloid Lineage Decision during Early T-cell Development; 10.7907/PEWS-KM18
• Saxena, Abigail Green (2013) Sulfur-Cycling in Methane-Rich Ecosystems: Uncovering Microbial Processes and Novel Niches; 10.7907/Z9125QKD
• Zhang, Jingli A. (2012) Global Analysis of Dynamic Epigenetic Marking and Transcriptional Regulation Underlying T-Cell Lineage Commitment ; 10.7907/9Q4G-E674
• Garcia, Mayra (2012) Dorsal-Ventral Patterning and Gene Regulation in the Early Embryo of Drosophila melanogaster; 10.7907/GFQK-GE02
• Yu, Kenneth Kwok-Chang (2012) Engineering Immunity Against HIV ; 10.7907/GFQ8-M763
• Shen, Yue (2012) Interkingdom Communication of a Bacterial Mutualist and its Mammalian Host; 10.7907/56YV-8J33
• Chow, Janet (2011) A Pathobiont of the Mammalian Microbiota Balances Intestinal Inflammation and Colonization; 10.7907/4FZ1-A113
• Nahmad Bensusan, Marcos (2011) Interpretation and Scaling of Positional Information During Development; 10.7907/2ZYV-FF66
• Damle, Sagar S. (2011) A Study of Information Processing in the Sea Urchin Embryo by Rewiring Mesodermal Gene Regulatory Networks and cis-Regulatory Analysis of Skeletogenic Regulators; 10.7907/186Z-VJ85
• Kuntz, Steven Gregory (2011) hlh-1 and the C. elegans Body Wall Muscle Transcriptional Differentiation Network; 10.7907/18XS-YM65
• Rao, Dinesh Subba (2010) Small RNAs Play Big Roles in Hematopoietic Development; 10.7907/D6GJ-4057
• Zarnegar, Mark Andrew (2010) Investigating the Transcriptional Mechanisms Controlling Sfpi1, a Critical Regulatory Node Within Multiple Lineage Specifying Subcircuits of the Hematopoietic Gene Regulatory Network; 10.7907/ST6P-C529
• Tesar, Devin Brent (2009) Investigations of the Mechanisms of Receptor-Mediated Immunoglobulin Transport in Mammals and Birds; 10.7907/8M42-R866
• Gordon, Sean Patrick (2009) Hormone and Gene Feedback during Development and Regeneration in Arabidopsis thaliana; 10.7907/T3CR-TC54
• Klein, Joshua Simon (2009) Investigations in the Design and Characterization of HIV-1 Neutralizing Molecules; 10.7907/QPEC-8Y25
• Adams, Meghan Sara (2009) Uncovering Molecular Properties of Neural Crest Cells; 10.7907/KYEQ-T802
• Culler, Stephanie June (2009) Reprogramming Alternative Splicing Using Cis-Acting Intronic Control Elements; 10.7907/HVGX-RJ21
• Warren, Luigi Andrea (2008) Single-Cell Gene-Expression Analysis by Quantitative RT-PCR; 10.7907/PJ42-XB85
• Smith, Stephen Edward Paucha (2008) Maternal Immune Activation and Abnormal Behavior in the Adult Offspring: Towards a Mechanism; 10.7907/CB5Y-P545
• Mortazavi, Ali (2008) Structure and Evolution of Mammalian Gene Networks; 10.7907/FT1Y-M657
• Fernandes, Jolene Sabrina (2007) Dissection of Gene Regulatory Networks Underlying Patterning and Morphogenesis in the C. elegans Vulva; 10.7907/AKNB-Q161
• Lee, Pei Yun (2007) Function and Regulation of the Strongylocentrotus purpuratus gatae Gene; 10.7907/bjxm-rh79
• Montgomery, Jennifer Pielstick (2007) The Effects of Behavioral Stress and Endothelin Receptor Antagonists on Cancer; 10.7907/3FGQ-YS43
• Ashby, Meredith Howard (2007) The Sea Urchin Regulome in Development; 10.7907/523T-5R49
• Millward, Steven Wesley (2007) The Design, Synthesis, and Evolution of Macrocyclic mRNA Display Libraries Containing Unnatural Amino Acids; 10.7907/THV4-2A51
• Benjamin Schooler, Jordan (2006) Structural Studies of Human Immunodeficiency Virus Type I by CryoElectron Tomography; 10.7907/HM3M-HZ81
• Hemmati, Houman David (2006) Neural Stem and Progenitor Cells in Cancer and Development; 10.7907/46NX-E635
• Green, Harry Miguel (2006) Novel Methods for Studying Ras/Erk MAP Kinase Signaling in Developing T Cells; 10.7907/8wa9-t690
• Leung, Thomas Hin-Chai (2005) Specificity of Transcription Activation by NF-kB Subunits; 10.7907/100y-3c61
• Barbee, Susannah Dale (2005) The Functions of Phosphatidylinositol 3-Kinase in T Lymphocyte Development: Roles in Positive Selection and Thymic Exit; 10.7907/3bbr-b515
• Yang, Lili (2004) Towards Engineering Immunity; 10.7907/XTDP-SC35
• Meulemans, Daniel Keith (2004) Genetic Correlates of Neural Crest Evolution; 10.7907/XGSJ-Y873
• Kirouac, Martha (2003) cis-Regulatory Control of Three Cell Fate-Specific Genes in Vulval Organogenesis of C. elegans and C. briggsae; 10.7907/3WVY-RM54
• Hamburger, Zsuzsa Andrea (2002) Crystallographic Studies of Invasin, a Bacterial Adhesion Molecule from Yersinia pseudotuberculosis; 10.7907/NKAY-AB98
• Liu, Yang (2001) Molecular Mechanism of Sulfated Carbohydrate Recognition: Structural and Biochemical Studies of the Cysteine-Rich Domain of Mannose Receptor; 10.7907/fj0v-hx76
• Martin, Warham Lance (2001) Protein-Protein Recognition: The Neonatal Fc Receptor and Immunoglobulin G; 10.7907/9ek6-6833
• Brown, Keith B. (2001) Comparative Studies of Vulva Development in C. briggsae; 10.7907/n37e-5g80
• Cornelison, Dawn D. W. (1998) Gene expression in wild-type and MyoD-null satellite cells: regulation of activation, proliferation, and myogenesis; 10.7907/09DA-FF55
• Boysen, Cecilie (1996) Analysis of the Human T Cell Receptor α/δ Locus: New Approaches to Mapping and Sequencing; 10.7907/7x0h-qy95
• Hill, Russell James (1994) The LIN-3 gene of the nematode C. elegans is the vulval-inducing signal; 10.7907/8z98-jj03
• Garrity, Paul Allen (1993) The in vivo examination of transcriptional control mechanisms in mammalian cells; 10.7907/kt02-n508
• Vernooij, Bernardus Theodorus Maria (1992) The mouse T cell receptor gamma genes; 10.7907/wnmy-rm49
• Michelsohn, Arie M. (1992) Sequential Steps in the Determination of Chromaffin Cell Fate by Glucocorticoids; 10.7907/pbh4-ts59
• Wang, Kang-Sheng (1991) Molecular characterization of a receptor for the Togavirus Sindbis virus; 10.7907/qdr9-p250
• Fors, Lance (1990) Analysis of the Structure, Expression and Evolution of the Shark Myelin Proteins and Genes; 10.7907/840h-0p67
• Brorson, Kurt Andrew (1990) Analysis of Expression, Structure and Evolution of Non-Classical Class I Major Histocompatibility Complex Genes; 10.7907/5NHE-7929
• Brorson, Kurt Andrew (1990) Analysis of Expression, Structure and Evolution of Non-Classical Class I Major Histocompatibility Complex Genes; 10.7907/5NHE-7929
• Preugschat, Frank (1990) Proteolytic processing of the nonstructural proteins of dengue 2 virus; 10.7907/nn0p-gt03
• Fors, Lance (1990) Analysis of the Structure, Expression and Evolution of the Shark Myelin Proteins and Genes; 10.7907/840h-0p67
• McQueen, Anne T. (1989) Ammonium Ion Effects on Hybridoma Cell Physiology; 10.7907/a159-dy39
• Wittrup, Karl Dane (1989) Plasmid Propagation in the Yeast Saccharomyces cerevisiae: Flow Cytometry Studies and Segregated Modeling; 10.7907/KQYB-CX46
• Sucov, Henry Michael (1989) Characterization and Developmental Regulation of a Gene Expressed Specifically in the Skeletogenic Lineage of the Sea Urchin Embryo; 10.7907/zm4z-4942
• Sucov, Henry Michael (1989) Characterization and Developmental Regulation of a Gene Expressed Specifically in the Skeletogenic Lineage of the Sea Urchin Embryo; 10.7907/zm4z-4942
• McQueen, Anne T. (1989) Ammonium Ion Effects on Hybridoma Cell Physiology; 10.7907/a159-dy39
• Wittrup, Karl Dane (1989) Plasmid Propagation in the Yeast Saccharomyces cerevisiae: Flow Cytometry Studies and Segregated Modeling; 10.7907/KQYB-CX46
• Hahn, Young Shin Lim (1989) Functional Analysis of Viral Nonstructural and Structural Proteins; 10.7907/3trk-k698
• Hahn, Young Shin Lim (1989) Functional Analysis of Viral Nonstructural and Structural Proteins; 10.7907/3trk-k698
• Eakle, Kurt Andrew (1989) Characterization of the SEC18 Gene of S. cerevisiae: Identification of a Protein Involved in Yeast Secretion; 10.7907/6aqb-xd83
• Eakle, Kurt Andrew (1989) Characterization of the SEC18 Gene of S. cerevisiae: Identification of a Protein Involved in Yeast Secretion; 10.7907/6aqb-xd83
• Hahn, Chang Soo (1988) Structure-Function Relationships in the Structural Proteins and in the RNAs of Alphaviruses and Flaviviruses; 10.7907/n3rf-9306
• Martin, Christopher Hayes (1988) Evolution and Expression at the 68C Glue Gene Cluster of Drosophila; 10.7907/p2n6-q185
• Matthews, Beverley Bond (1987) Structure and Expression of the Actin Gene Family of Drosophila melanogaster; 10.7907/05zz-5w73
• Gao, Boning (1986) The Structure and Expression of the Gene Coding for Bindin, a Species Specific Sea Urchin Protein; 10.7907/h0pw-fh17
• Sun, Yi Henry (1986) Organization and Evolution of the Class I Genes in the Murine Major Histocompatibility Complex; 10.7907/qfw5-kk48
• Fisher, Douglas Arthur (1986) Class I Genes of the Major Histocompatibility Complex: Structural Studies on Genes of the Tla Locus; 10.7907/ymba-8s86
• Lee, James Joseph (1986) The Genomic Organization and Expression of the Strongylocentrotus purpuratus Actin Gene Family; 10.7907/b4m8-v194
• Kim, Stuart Kilsu (1985) Antibody Genes, Oncogenes and Antisense Genes; 10.7907/xsdv-c915
• Levy, David E. (1985) Expression of Endogenous Retroviruses in Inbred Mice : Coordinate Regulation and Structure of Multiple Transcription Units; 10.7907/165r-9v89
• Kronenberg, Mitchell (1983) Gene Expression in B and T Lymphocytes: (1) Evolution of Rat Cκ Alleles (2) The T-cell Receptor Problem; 10.7907/p24z-a733