@article{https://authors.library.caltech.edu/records/6xhb5-f2797, title = "Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning", journal = "Cell Systems", year = "2024", url = "https://authors.library.caltech.edu/records/6xhb5-f2797", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2024.04.006", volume = "15" } @article{https://authors.library.caltech.edu/records/881ph-47g88, title = "The multimodality cell segmentation challenge: toward universal solutions", journal = "Nature Methods", year = "2024", url = "https://authors.library.caltech.edu/records/881ph-47g88", id = "record", issn = "1548-7091", doi = "10.1038/s41592-024-02233-6" } @other{https://authors.library.caltech.edu/records/47sqx-33w78, title = "A Foundation Model for Cell Segmentation", journal = "bioRvix", year = "2024", url = "https://authors.library.caltech.edu/records/47sqx-33w78", id = "record", issn = "2692-8205", doi = "10.1101/2023.11.17.567630", pmcid = "PMC10690226" } @article{https://authors.library.caltech.edu/records/49xd1-6wb05, title = "A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids", journal = "Cell Systems", year = "2023", url = "https://authors.library.caltech.edu/records/49xd1-6wb05", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2023.08.002", volume = "14" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20230725-48996000.4, title = "A spatially resolved timeline of the human maternal–fetal interface", journal = "Nature", year = "2023", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-48996000.4", id = "record", issn = "0028-0836", doi = "10.1038/s41586-023-06298-9", volume = "619", pmcid = "PMC10356615" } @other{https://resolver.caltech.edu/CaltechAUTHORS:20230316-182900000.74, title = "A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids", year = "2023", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230316-182900000.74", id = "record", doi = "10.1101/2022.11.01.514733" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20230725-857112000.41, title = "Biomonitoring and precision health in deep space supported by artificial intelligence", journal = "Nature Machine Intelligence", year = "2023", url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-857112000.41", id = "record", issn = "2522-5839", doi = "10.1038/s42256-023-00617-5", volume = "5" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20220804-249913000, title = "Imaging cell biology", journal = "Nature Cell Biology", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220804-249913000", id = "record", issn = "1465-7392", doi = "10.1038/s41556-022-00960-6", volume = "24" } @other{https://resolver.caltech.edu/CaltechAUTHORS:20220728-119864000, title = "Modulation of bacterial cell size and growth rate via activation of a cell envelope stress response", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220728-119864000", id = "record", doi = "10.1101/2022.07.26.501648" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817, title = "Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning", journal = "Nature Biotechnology", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817", id = "record", issn = "1087-0156", doi = "10.1038/s41587-021-01094-0", volume = "40", pmcid = "PMC9010346" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20220126-630616000, title = "The immunoregulatory landscape of human tuberculosis granulomas", journal = "Nature Immunology", year = "2022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220126-630616000", id = "record", issn = "1529-2908", doi = "10.1038/s41590-021-01121-x", volume = "23", pmcid = "PMC8810384" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20200909-073011987, title = "Single-cell metabolic profiling of human cytotoxic T cells", journal = "Nature Biotechnology", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200909-073011987", id = "record", issn = "1087-0156", doi = "10.1038/s41587-020-0651-8", volume = "39" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20190916-101510993, title = "DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes", journal = "Nature Methods", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190916-101510993", id = "record", issn = "1548-7091", doi = "10.1038/s41592-020-01023-0", volume = "18" } @other{https://resolver.caltech.edu/CaltechAUTHORS:20200610-093054353, title = "Multiplexed imaging of human tuberculosis granulomas uncovers immunoregulatory features conserved across tissue and blood", year = "2020", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200610-093054353", id = "record", doi = "10.1101/2020.06.08.140426" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20190528-110726386, title = "Deep learning for cellular image analysis", journal = "Nature Methods", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190528-110726386", id = "record", issn = "1548-7091", doi = "10.1038/s41592-019-0403-1", volume = "16" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20191205-101747645, title = "Combining Multiplexed Ion Beam Imaging (MIBI) with Convolutional Neural Networks to accurately segment cells in human tissue", journal = "Journal for ImmunoTherapy of Cancer", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191205-101747645", id = "record", issn = "2051-1426", doi = "10.1186/s40425-019-0764-0", volume = "7" } @other{https://resolver.caltech.edu/CaltechAUTHORS:20191014-100546775, title = "Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191014-100546775", id = "record", doi = "10.1101/803205" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20191017-144439188, title = "Voices in methods development", journal = "Nature Methods", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191017-144439188", id = "record", issn = "1548-7091", doi = "10.1038/s41592-019-0585-6", volume = "16", pmcid = "PMC7075469" } @other{https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232849, title = "DeepCell 2.0: Automated cloud deployment of deep learning models for large-scale cellular image analysis", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232849", id = "record", doi = "10.1101/505032" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180906-124040516, title = "A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging", journal = "Cell", year = "2018", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180906-124040516", id = "record", issn = "0092-8674", doi = "10.1016/j.cell.2018.08.039", volume = "174", pmcid = "PMC6132072" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180321-153149226, title = "A forward genetic screen identifies host factors that influence the lysis-lysogeny decision in phage lambda", journal = "Molecular Biology of the Cell", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180321-153149226", id = "record", issn = "1059-1524", doi = "10.1091/mbc.E17-10-0618", volume = "28" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180613-110240953, title = "Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation", journal = "Cell Systems", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180613-110240953", id = "record", issn = "2405-4712", doi = "10.1016/j.cels.2017.03.010", volume = "4" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20180613-111613718, title = "Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments", journal = "PLOS Computational Biology", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180613-111613718", id = "record", issn = "1553-7358", doi = "10.1371/journal.pcbi.1005177", volume = "12", pmcid = "PMC5096676" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294, title = "A Single-Molecule Hershey-Chase Experiment", journal = "Current Biology", year = "2012", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294", id = "record", issn = "0960-9822", doi = "10.1016/j.cub.2012.05.023", volume = "22", pmcid = "PMC3462812" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251, title = "Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ", journal = "Biophysical Journal", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251", id = "record", issn = "0006-3495", doi = "10.1016/j.bpj.2010.06.024", volume = "99", pmcid = "PMC2920739" } @article{https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010, title = "Biochemistry on a Leash: The Roles of Tether Length and Geometry in Signal Integration Proteins", journal = "Biophysical Journal", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010", id = "record", issn = "0006-3495", doi = "10.1016/j.bpj.2008.10.052", volume = "96", pmcid = "PMC2717227" }