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    title = "Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease",
    journal = "Nature Communications",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/0j638-jx111",
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    title = "A human embryonic limb cell atlas resolved in space and time",
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    id = "record",
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    doi = "10.1038/s41586-023-06806-x"
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    title = "Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells",
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    year = "2023",
    url = "https://authors.library.caltech.edu/records/0bj3x-smq22",
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    doi = "10.1101/gr.278205.123",
    volume = "33",
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    title = "RNAget: an API to securely retrieve RNA quantifications",
    journal = "Bioinformatics",
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    doi = "10.1093/bioinformatics/btad126",
    volume = "39",
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    title = "Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210429-100236539",
    id = "record",
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    title = "Occupancy maps of 208 chromatin-associated proteins in one human cell type",
    journal = "Nature",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181128-093527238",
    id = "record",
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    title = "The changing mouse embryo transcriptome at whole tissue and single-cell resolution",
    journal = "Nature",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200618-081148283",
    id = "record",
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    doi = "10.1038/s41586-020-2536-x",
    volume = "583"
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    title = "Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations",
    journal = "Genome Research",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191224-093208227",
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    doi = "10.1101/gr.260463.119",
    volume = "30",
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    title = "Dynamics of microRNA expression during mouse prenatal development",
    journal = "Genome Research",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181212-091659236",
    id = "record",
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    doi = "10.1101/gr.248997.119",
    volume = "29",
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    title = "Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development",
    journal = "Cell Systems",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191016-124948167",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2019.09.008",
    volume = "9",
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    title = "Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170627-111146177",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1712387115",
    volume = "115",
    pmcid = "PMC5879656"
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    title = "Science Forum: The Human Cell Atlas",
    journal = "eLife",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171211-160509139",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.27041",
    volume = "6",
    pmcid = "PMC5762154"
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    title = "Mapping a multiplexed zoo of mRNA expression",
    journal = "Development",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161011-070233463",
    id = "record",
    issn = "0950-1991",
    doi = "10.1242/dev.140137",
    volume = "143",
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    title = "The NIH BD2K center for big data in translational genomics",
    journal = "Journal of the American Medical Informatics Association",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150721-085701041",
    id = "record",
    issn = "1067-5027",
    doi = "10.1093/jamia/ocv047",
    volume = "22",
    pmcid = "PMC5009913"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20150327-092616999,
    title = "Pitfalls of Mapping High-Throughput Sequencing Data to Repetitive Sequences: Piwi's Genomic Targets Still Not Identified",
    journal = "Developmental Cell",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150327-092616999",
    id = "record",
    issn = "1534-5807",
    doi = "10.1016/j.devcel.2015.01.013",
    volume = "32",
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    title = "Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150112-083957342",
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    volume = "16",
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    title = "A ratiometric-based measure of gene co-expression",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141212-110652717",
    id = "record",
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    volume = "15",
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    title = "A comparative encyclopedia of DNA elements in the mouse genome",
    journal = "Nature",
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    id = "record",
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    doi = "10.1038/nature13992",
    volume = "515",
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    title = "Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease",
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    id = "record",
    issn = "0027-8424",
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    volume = "111",
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    title = "Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: Identifying ChIP-quality p300 monoclonal antibodies",
    journal = "Scientific Reports",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140707-135253126",
    id = "record",
    issn = "2045-2322",
    doi = "10.1038/srep05152",
    volume = "4",
    pmcid = "PMC4053718"
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    title = "Defining functional DNA elements in the human genome",
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    issn = "0027-8424",
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    volume = "111",
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    title = "From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing",
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    doi = "10.1101/gr.161034.113",
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    title = "Large-scale quality analysis of published ChIP-seq data",
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    volume = "4",
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    title = "Evidence for Site-Specific Occupancy of the Mitochondrial Genome by Nuclear Transcription Factors",
    journal = "PLoS ONE",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140228-100446267",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0084713",
    volume = "9",
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    title = "Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps",
    journal = "Genome Research",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140113-101131322",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.158261.113",
    volume = "23",
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    title = "Transcriptional regulation by nicotine in dopaminergic neurons",
    journal = "Biochemical Pharmacology",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130815-073947290",
    id = "record",
    issn = "0006-2952",
    doi = "10.1016/j.bcp.2013.07.031",
    volume = "86",
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    title = "Genome-Wide Analysis Reveals Coating of the Mitochondrial Genome by TFAM",
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    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131010-110126087",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0074513",
    volume = "8",
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    title = "Dynamic DNA methylation across diverse human cell lines and tissues",
    journal = "Genome Research",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130404-103524254",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.147942.112",
    volume = "23",
    pmcid = "PMC3589544"
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    title = "Microglia in the Cerebral Cortex in Autism",
    journal = "Journal of Autism and Developmental Disorders",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121211-104243757",
    id = "record",
    issn = "0162-3257",
    doi = "10.1007/s10803-012-1513-0",
    volume = "42"
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    title = "Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121106-105719691",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1214267109",
    volume = "109",
    pmcid = "PMC3479560"
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    title = "Transcription factor redundancy and tissue-specific regulation: Evidence from functional and physical network connectivity",
    journal = "Genome Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121102-133341484",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.133306.111",
    volume = "22",
    pmcid = "PMC3460186"
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    title = "An integrated encyclopedia of DNA elements in the human genome",
    journal = "Nature",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130513-153517455",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature11247",
    volume = "489",
    pmcid = "PMC4243026"
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    title = "Landscape of transcription in human cells",
    journal = "Nature",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121025-155437375",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature11233",
    volume = "489",
    pmcid = "PMC3684276"
}


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    title = "RNA editing in the human ENCODE RNA-seq data",
    journal = "Genome Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120927-130942776",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.134957.111",
    volume = "22",
    pmcid = "PMC3431480"
}


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    title = "ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia",
    journal = "Genome Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120927-133114530",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.136184.111",
    volume = "22",
    pmcid = "PMC3431496"
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    title = "An encyclopedia of mouse DNA elements (Mouse ENCODE)",
    journal = "Genome Biology",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130410-142632958",
    id = "record",
    issn = "1465-6906",
    doi = "10.1186/gb-2012-13-8-418",
    volume = "13",
    pmcid = "PMC3491367"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120703-113106931,
    title = "Systematic evaluation of factors influencing ChIP-seq fidelity",
    journal = "Nature Methods",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120703-113106931",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/NMETH.1985",
    volume = "9",
    pmcid = "PMC3477507"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120530-114833949,
    title = "Effects of sequence variation on differential allelic transcription factor occupancy and gene expression",
    journal = "Genome Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120530-114833949",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.131201.111",
    volume = "22",
    pmcid = "PMC3337432"
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    title = "Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity",
    journal = "Cell",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120511-113721604",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2012.01.056",
    volume = "149",
    pmcid = "PMC3336965"
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    title = "Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation",
    journal = "Cell",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120224-130228176",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2011.12.014",
    volume = "148",
    pmcid = "PMC3339270"
}


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    title = "Differentiation and fiber type-specific activity of a muscle creatine kinase intronic enhancer",
    journal = "Skeletal Muscle",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131107-133226265",
    id = "record",
    issn = "2044-5040",
    doi = "10.1186/2044-5040-1-25",
    volume = "1",
    pmcid = "PMC3157005"
}


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    title = "Inviability of a DNA2 deletion mutant is due to the DNA damage checkpoint",
    journal = "Cell Cycle",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110606-080215273",
    id = "record",
    issn = "1538-4101",
    doi = "10.4161/cc.10.10.15643",
    volume = "10",
    pmcid = "PMC3127164"
}


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    title = "A User's Guide to the Encyclopedia of DNA Elements (ENCODE)",
    journal = "PLoS Biology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200416-153412946",
    id = "record",
    issn = "1545-7885",
    doi = "10.1371/journal.pbio.1001046",
    volume = "9",
    pmcid = "PMC3079585"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110420-111130557,
    title = "High resolution mapping of Twist to DNA in Drosophila  embryos: Efficient functional analysis and evolutionary conservation",
    journal = "Genome Research",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110420-111130557",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.104018.109",
    volume = "21",
    pmcid = "PMC3065704"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110520-094733599,
    title = "A User's Guide to the Encyclopedia of DNA Elements (ENCODE)",
    journal = "PLoS Biology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110520-094733599",
    id = "record",
    issn = "1544-9173",
    doi = "10.1371/journal.pbio.1001046",
    volume = "9",
    pmcid = "PMC3079585"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20101220-153301188,
    title = "Scaffolding a Caenorhabditis nematode genome with RNA-seq",
    journal = "Genome Research",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101220-153301188",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.111021.110",
    volume = "20",
    pmcid = "PMC2990000"
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    title = "Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation",
    journal = "Nature Biotechnology",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100601-111602154",
    id = "record",
    issn = "1087-0156",
    doi = "10.1038/nbt.1621",
    volume = "28",
    pmcid = "PMC3146043"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20100618-090000348,
    title = "Computation for ChIP-seq and RNA-seq studies",
    journal = "Nature Methods",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100618-090000348",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/NMETH.1371",
    volume = "6",
    pmcid = "PMC4121056"
}


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    title = "Multigenome DNA sequence conservation identifies Hox cis-regulatory elements",
    journal = "Genome Research",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:KUNgr08",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.085472.108",
    volume = "18",
    pmcid = "PMC2593573"
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    title = "A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle",
    journal = "Genes and Development",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190502-112920271",
    id = "record",
    issn = "0890-9369",
    doi = "10.1101/gad.468508",
    volume = "22",
    pmcid = "PMC2492748"
}


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    title = "Genome-Wide Mapping of in Vivo Protein-DNA Interactions",
    journal = "Science",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141119-082130132",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1141319",
    volume = "316"
}


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    title = "Connectivity in the yeast cell cycle transcription network : inferences from neural networks",
    journal = "PLoS Computational Biology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:HARploscb06",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.0020169",
    volume = "2",
    pmcid = "PMC1761652"
}


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    title = "Spatiometabolic Stratification of Shewanella oneidensis Biofilms",
    journal = "Applied and Environmental Microbiology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:TEAaem06",
    id = "record",
    issn = "0099-2240",
    doi = "10.1128/AEM.01163-06",
    volume = "72",
    pmcid = "PMC1636161"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190507-151408505,
    title = "Enhanced Signals and Fast Nucleic Acid Hybridization By Microfluidic Chaotic Mixing",
    journal = "Angewandte Chemie International Edition",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-151408505",
    id = "record",
    issn = "1433-7851",
    doi = "10.1002/anie.200503830",
    volume = "45"
}


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    title = "Mining gene expression data by interpreting principal components",
    journal = "BMC Bioinformatics",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:RODbmcbinform06",
    id = "record",
    issn = "1471-2105",
    doi = "10.1186/1471-2105-7-194",
    volume = "7",
    pmcid = "PMC1501050"
}


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    title = "A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data",
    journal = "Nucleic Acids Research",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:HARnar05",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gki536",
    volume = "33",
    pmcid = "PMC1092273"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190507-142738304,
    title = "Reproducibility, Fidelity, and Discriminant Validity of mRNA Amplification for Microarray Analysis from Primary Hematopoietic Cells",
    journal = "Journal of Molecular Diagnostics",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-142738304",
    id = "record",
    issn = "1525-1578",
    doi = "10.1016/s1525-1578(10)60008-6",
    volume = "7",
    pmcid = "PMC1867503"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:WILnar04,
    title = "Genomic DNA as a cohybridization standard for mammalian microarray measurements",
    journal = "Nucleic Acids Research",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:WILnar04",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gnh078",
    volume = "32",
    pmcid = "PMC434457"
}


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    title = "Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast",
    journal = "Molecular and  Cellular Proteomics",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GRAmcp04",
    id = "record",
    issn = "1535-9476",
    doi = "10.1074/mcp.M300099-MCP200",
    volume = "3"
}


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    title = "p62 overexpression in breast tumors and regulation by prostate-derived Ets factor in breast cancer cells",
    journal = "Oncogene",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-161207171",
    id = "record",
    issn = "0950-9232",
    doi = "10.1038/sj.onc.1206325",
    volume = "22"
}


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    title = "Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations",
    journal = "Bioinformatics",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111027-080208726",
    id = "record",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btg042",
    volume = "19"
}


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    title = "Significance and statistical errors in the analysis of DNA microarray data",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:BROpnas02.807",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.162468199",
    volume = "99",
    pmcid = "PMC130571"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190507-145607219,
    title = "Identification and Confirmation of a Module of Coexpressed Genes",
    journal = "Genome Research",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-145607219",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.418402",
    volume = "12",
    pmcid = "PMC187523"
}


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    title = "New Computational Approaches for Analysis of cis-Regulatory Networks",
    journal = "Developmental Biology",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121024-093005962",
    id = "record",
    issn = "0012-1606",
    doi = "10.1006/dbio.2002.0619",
    volume = "246"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141118-110606038,
    title = {Information access - Building A "GenBank" of the Published Literature},
    journal = "Science",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141118-110606038",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1060273",
    volume = "291"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150303-093801749,
    title = "Culture in Reduced Levels of Oxygen Promotes Clonogenic Sympathoadrenal Differentiation by Isolated Neural Crest Stem Cells",
    journal = "Journal of Neuroscience",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150303-093801749",
    id = "record",
    issn = "0270-6474",
    doi = "10.1523/JNEUROSCI.20-19-07370.2000",
    volume = "20",
    pmcid = "PMC6772795"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190507-161813818,
    title = "MyoD−/− Satellite Cells in Single-Fiber Culture Are Differentiation Defective and MRF4 Deficient",
    journal = "Developmental Biology",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-161813818",
    id = "record",
    issn = "0012-1606",
    doi = "10.1006/dbio.2000.9682",
    volume = "224"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190508-072837226,
    title = "p27^(Kip1) is expressed transiently in developing myotomes and enhances myogenesis",
    journal = "Cell Growth and Differentiation",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190508-072837226",
    id = "record",
    issn = "1044-9523",
    volume = "9"
}


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    title = "Single-Cell Analysis of Regulatory Gene Expression in Quiescent and Activated Mouse Skeletal Muscle Satellite Cells",
    journal = "Developmental Biology",
    year = "1997",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190506-133355251",
    id = "record",
    issn = "0012-1606",
    doi = "10.1006/dbio.1997.8721",
    volume = "191"
}


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    title = "Different MRF4 Knockout Alleles Differentially Disrupt Myf-5 Expression: cis-Regulatory Interactions at the MRF4/Myf-5 Locus",
    journal = "Developmental Biology",
    year = "1997",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190508-073808378",
    id = "record",
    issn = "0012-1606",
    doi = "10.1006/dbio.1997.8670",
    volume = "188"
}


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    title = "BRCA1 mRNA is expressed highly during meiosis and spermiogenesis but not during mitosis of male germ cells",
    journal = "Oncogene",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190506-133045664",
    id = "record",
    issn = "0950-9232",
    volume = "13"
}


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    title = "Know Your Neighbors: Three Phenotypes in Null Mutants of the Myogenic bHLH Gene MRF4",
    journal = "Cell",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-113456195",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/s0092-8674(00)81073-9",
    volume = "85"
}


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    title = "Evidence for Developmentally Programmed Transdifferentiation in Mouse Esophageal Muscle",
    journal = "Science",
    year = "1995",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141210-093812583",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.270.5243.1818",
    volume = "270"
}


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    title = "Comparative Analysis of Homo sapiens and Mus musculus Cyclin-Dependent Kinase (CDK) Inhibitor Genes P16 (MTSl) and PIS (MTS2)",
    journal = "Journal of Molecular Evolution",
    year = "1995",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140716-084520222",
    id = "record",
    issn = "0022-2844",
    doi = "10.1007/BF00173159",
    volume = "41"
}


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    title = "Disruption of the mouse MRF4 gene identifies multiple waves of myogenesis in the myotome",
    journal = "Development",
    year = "1995",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PATdev95",
    id = "record",
    issn = "0950-1991",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160510-133746042,
    title = "Inhibition of Klenow fragment DNA polymerase on double-helical templates by oligonucleotide-directed triple-helix formation",
    journal = "Biochemistry",
    year = "1994",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160510-133746042",
    id = "record",
    issn = "0006-2960",
    doi = "10.1021/bi00186a019",
    volume = "33"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160510-133746868,
    title = "Phosphorothioate oligonucleotide-directed triple helix formation",
    journal = "Biochemistry",
    year = "1994",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160510-133746868",
    id = "record",
    issn = "0006-2960",
    doi = "10.1021/bi00184a002",
    volume = "33"
}


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    title = "Cloning of mid-G\_1 serum response genes and identification of a subset regulated by conditional myc expression",
    journal = "Molecular Biology of the Cell",
    year = "1994",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190507-150229210",
    id = "record",
    issn = "1059-1524",
    doi = "10.1091/mbc.5.3.375",
    volume = "5",
    pmcid = "PMC301044"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120221-114430298,
    title = "Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors",
    journal = "Molecular and Cellular Biology",
    year = "1994",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120221-114430298",
    id = "record",
    issn = "0270-7306",
    doi = "10.1128/MCB.14.3.2159",
    volume = "14",
    pmcid = "PMC358576"
}


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    title = "Nucleolar localization of myc transcripts",
    journal = "Molecular and Cellular Biology",
    year = "1993",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:BONmcb93",
    id = "record",
    issn = "0270-7306",
    volume = "13"
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    title = "Isolated sequences from the linked Myf-5 and MRF4 genes drive distinct patterns of muscle-specific expression in transgenic mice",
    journal = "Development",
    year = "1993",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PATdev93",
    id = "record",
    issn = "0950-1991",
    volume = "118"
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    title = "Skeletal muscle phenotypes initiated by ectopic MyoD in transgenic mouse heart",
    journal = "Development",
    year = "1992",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190508-081912347",
    id = "record",
    issn = "0950-1991",
    volume = "114"
}


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    title = "Effects of Different DNA Polymerases in Ligation-Mediated PCR: Enhanced Genomic Sequencing and In vivo Footprinting",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "1992",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GARpnas92",
    id = "record",
    issn = "0027-8424",
    volume = "89",
    pmcid = "PMC48377"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20160510-145808159,
    title = "Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system",
    journal = "Biochemistry",
    year = "1992",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160510-145808159",
    id = "record",
    issn = "0006-2960",
    doi = "10.1021/bi00116a012",
    volume = "31"
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    title = "c-myc inhibition of MyoD and myogenin-initiated myogenic differentiation",
    journal = "Molecular and Cellular Biology",
    year = "1991",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120423-113016430",
    id = "record",
    issn = "0270-7306",
    volume = "11",
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    title = "Ligation‐Mediated PCR for Genomic Sequencing and Footprinting",
    journal = "Current Protocols in Molecular Biology",
    year = "1991",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210730-165711306",
    id = "record",
    issn = "1934-3639",
    doi = "10.1002/j.1934-3647.1991.tb00217.x",
    volume = "14"
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    title = "Tissue-specific expression from a compound TATA-dependent and TATA-independent promoter",
    journal = "Molecular and Cellular Biology",
    year = "1990",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GARmcb90",
    id = "record",
    issn = "0270-7306",
    volume = "10",
    pmcid = "PMC361326"
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    title = "Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA",
    journal = "Biochemistry",
    year = "1990",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160510-145814459",
    id = "record",
    issn = "0006-2960",
    doi = "10.1021/bi00489a045",
    volume = "29"
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:MINpnas90",
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    doi = "10.1073/pnas.87.3.1089",
    volume = "87",
    pmcid = "PMC53416"
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    title = "In vivo Footprinting of a Muscle Specific Enhancer by Ligation Mediated PCR",
    journal = "Science",
    year = "1989",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141203-101540445",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.2814500",
    volume = "246"
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    title = "Genomic Sequencing and Methylation Analysis by Ligation Mediated PCR",
    journal = "Science",
    year = "1989",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150203-134224388",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.2814502",
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    title = "Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation",
    journal = "Science",
    year = "1989",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150116-103837502",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.2549631",
    volume = "245"
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    journal = "Molecular and Cellular Biology",
    year = "1989",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:JOHmcb89",
    id = "record",
    issn = "0270-7306",
    volume = "9",
    pmcid = "PMC362385"
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    title = "Isolation and Characterization of a Xenopus laevis C Protein cDNA: Structure and Expression of a Heterogeneous Nuclear Ribonucleoprotein Core Protein",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "1988",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PREpnas88",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.85.24.9669",
    volume = "85",
    pmcid = "PMC282832"
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    title = "Expression of transfected vimentin genes in differentiating murine erythroleukemia cells reveals divergent cis-acting regulation of avian and mammalian vimentin sequences",
    journal = "Molecular and Cellular Biology",
    year = "1987",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:NGAmcb87",
    id = "record",
    issn = "0270-7306",
    doi = "10.1128/MCB.7.11.3955",
    volume = "7",
    pmcid = "PMC368064"
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    title = "Poly-L-ornithine-mediated transformation of mammalian cells",
    journal = "Molecular and Cellular Biology",
    year = "1987",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:BONmcb87",
    id = "record",
    issn = "0270-7306",
    volume = "7"
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    title = "Molecular Cloning of cDNA for the Nuclear Ribonucleoprotein Particle C Proteins: A Conserved Gene Family",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "1986",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:NAKpnas86",
    id = "record",
    issn = "0027-8424",
    volume = "83",
    pmcid = "PMC323219"
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    title = "Stable reduction of thymidine kinase activity in cells expressing high levels of anti-sense RNA",
    journal = "Cell",
    year = "1985",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190508-081413730",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/S0092-8674(85)80108-2",
    volume = "42"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20120627-135001671,
    title = "Tissue-specific Expression of Distinct Spectrin and Ankyrin Transcripts in Erythroid and Nonerythroid Cells",
    journal = "Journal of Cell Biology",
    year = "1985",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120627-135001671",
    id = "record",
    issn = "0021-9525",
    doi = "10.1083/jcb.100.1.152",
    volume = "100",
    pmcid = "PMC2113487"
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    title = "Introduction and Expression of a Rabbit β-globin Gene in Mouse Fibroblasts",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "1979",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:WOLpnas79",
    id = "record",
    issn = "0027-8424",
    volume = "76"
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    title = "Sea urchin embryo mRNA sequences expressed in the nuclear RNA of adult tissues",
    journal = "Cell",
    year = "1978",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160414-140621610",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/0092-8674(78)90348-3",
    volume = "14"
}


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    title = "Appearance and persistence of maternal RNA sequences in sea urchin development",
    journal = "Developmental Biology",
    year = "1977",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160414-143901784",
    id = "record",
    issn = "0012-1606",
    doi = "10.1016/0012-1606(77)90123-3",
    volume = "60"
}


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    title = "Structural Gene Sets Active in Embryos and Adult Tissues of the Sea Urchin",
    journal = "Cell",
    year = "1976",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160812-134923037",
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    issn = "0092-8674",
    doi = "10.1016/0092-8674(76)90200-2",
    volume = "7"
}