Wold, Barbara

Combined from CaltechAUTHORS

• Polonsky, Michal and Gerhardt, Louisa M. S., et el. (2024) Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease; Nature Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
• Pardo-Palacios, Francisco J. and Wang, Dingjie, et el. (2024) Systematic assessment of long-read RNA-seq methods for transcript identification and quantification; Nature Methods; 10.1038/s41592-024-02298-3
• Zhang, Bao and He, Peng, et el. (2023) A human embryonic limb cell atlas resolved in space and time; Nature; 10.1038/s41586-023-06806-x
• Moyers, Belle A. and Partridge, E. Christopher, et el. (2023) Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells; Genome Research; Vol. 33; No. 11; 1879-1892; PMCID PMC10760452; 10.1101/gr.278205.123
• Hitz, Benjamin C. and Lee, Jin-Wook, et el. (2023) The ENCODE Uniform Analysis Pipelines; 10.1101/2023.04.04.535623
• Upchurch, Sean and Palumbo, Emilio, et el. (2023) RNAget: an API to securely retrieve RNA quantifications; Bioinformatics; Vol. 39; No. 4; Art. No. btad126; PMCID PMC10081869; 10.1093/bioinformatics/btad126
• Zhang, Bao and He, Peng, et el. (2022) A human embryonic limb cell atlas resolved in space and time; 10.1101/2022.04.27.489800
• Rebboah, Elisabeth and Reese, Fairlie, et el. (2021) Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq; Genome Biology; Vol. 22; Art. No. 286; PMCID PMC8495978; 10.1186/s13059-021-02505-w
• Rozowsky, Joel and Drenkow, Jorg, et el. (2021) Multi-tissue integrative analysis of personal epigenomes; 10.1101/2021.04.26.441442
• He, Peng and Williams, Brian A., et el. (2020) The changing mouse embryo transcriptome at whole tissue and single-cell resolution; Nature; Vol. 583; No. 7818; 760-767; 10.1038/s41586-020-2536-x
• Partridge, E. Christopher and Chhetri, Surya B., et el. (2020) Occupancy maps of 208 chromatin-associated proteins in one human cell type; Nature; Vol. 583; No. 7818; 720-728; 10.1038/s41586-020-2023-4
• Ramaker, Ryne C. and Hardigan, Andrew A., et el. (2020) Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations; Genome Research; Vol. 30; No. 7; 939-950; PMCID PMC7397867; 10.1101/gr.260463.119
• Rahmanian, Sorena and Murad, Rabi, et el. (2019) Dynamics of microRNA expression during mouse prenatal development; Genome Research; Vol. 29; No. 11; 1900-1909; PMCID PMC6836743; 10.1101/gr.248997.119
• Zhou, Wen and Yui, Mary A., et el. (2019) Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development; Cell Systems; Vol. 9; No. 4; 321-337; PMCID PMC6932747; 10.1016/j.cels.2019.09.008
• Wyman, Dana and Balderrama-Gutierrez, Gabriela, et el. (2019) A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification; 10.1101/672931
• Angeles-Albores, David and Puckett Robinson, Carmie, et el. (2018) Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 13; E2930-E2939; PMCID PMC5879656; 10.1073/pnas.1712387115
• Regev, Aviv and Wold, Barbara (2017) Science Forum: The Human Cell Atlas; eLife; Vol. 6; Art. No. e27041; PMCID PMC5762154; 10.7554/eLife.27041
• Choi, Harry M. T. and Calvert, Colby R., et el. (2016) Mapping a multiplexed zoo of mRNA expression; Development; Vol. 143; No. 19; 3632-3637; PMCID PMC5087610; 10.1242/dev.140137
• Paten, Benedict and Diekhans, Mark, et el. (2015) The NIH BD2K center for big data in translational genomics; Journal of the American Medical Informatics Association; Vol. 22; No. 6; 1143-1147; PMCID PMC5009913; 10.1093/jamia/ocv047
• Marinov, Georgi K. and Wang, Jie, et el. (2015) Pitfalls of Mapping High-Throughput Sequencing Data to Repetitive Sequences: Piwi's Genomic Targets Still Not Identified; Developmental Cell; Vol. 32; No. 6; 765-771; PMCID PMC4494788; 10.1016/j.devcel.2015.01.013
• Kim, Daniel H. and Marinov, Georgi K., et el. (2015) Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming; Cell Stem Cell; Vol. 16; No. 1; 88-101; PMCID PMC4291542; 10.1016/j.stem.2014.11.005
• Abelin, Anna C. T. and Marinov, Georgi K., et el. (2014) A ratiometric-based measure of gene co-expression; BMC Bioinformatics; Vol. 15; Art. No. 331; PMCID PMC4289233; 10.1186/1471-2105-15-331
• Yue, Feng and Kirilusha, Anthony, et el. (2014) A comparative encyclopedia of DNA elements in the mouse genome; Nature; Vol. 515; No. 7527; 355-364; PMCID PMC4266106; 10.1038/nature13992
• Kellis, Manolis and Wold, Barbara, et el. (2014) Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 33; E3366; PMCID PMC4143047; 10.1073/pnas.1410434111
• Gasper, William C. and Marinov, Georgi K., et el. (2014) Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: Identifying ChIP-quality p300 monoclonal antibodies; Scientific Reports; Vol. 4; Art. No. 5152; PMCID PMC4053718; 10.1038/srep05152
• Kellis, Manolis and Wold, Barbara J., et el. (2014) Defining functional DNA elements in the human genome; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 17; 6131-6138; PMCID PMC4035993; 10.1073/pnas.1318948111
• Marinov, Georgi K. and Williams, Brian A., et el. (2014) From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing; Genome Research; Vol. 24; No. 3; 496-510; PMCID PMC3941114; 10.1101/gr.161034.113
• Marinov, Georgi K. and Kundaje, Anshul, et el. (2014) Large-scale quality analysis of published ChIP-seq data; G3; Vol. 4; No. 2; 209-223; PMCID PMC3931556; 10.1534/g3.113.008680
• Marinov, Georgi K. and Wang, Yun E., et el. (2014) Evidence for Site-Specific Occupancy of the Mitochondrial Genome by Nuclear Transcription Factors; PLoS ONE; Vol. 9; No. 1; Art. No. e84713; PMCID PMC3896368; 10.1371/journal.pone.0084713
• Mortazavi, Ali and Pepke, Shirley, et el. (2013) Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps; Genome Research; Vol. 23; No. 12; 2136-2148; PMCID PMC3847782; 10.1101/gr.158261.113
• Henley, Beverley M. and Williams, Brian A., et el. (2013) Transcriptional regulation by nicotine in dopaminergic neurons; Biochemical Pharmacology; Vol. 86; No. 8; 1074-1083; PMCID PMC3969234; 10.1016/j.bcp.2013.07.031
• Wang, Yun E. and Marinov, Georgi K., et el. (2013) Genome-Wide Analysis Reveals Coating of the Mitochondrial Genome by TFAM; PLoS ONE; Vol. 8; No. 8; Art. No. e74513; PMCID PMC3753274; 10.1371/journal.pone.0074513
• Varley, Katherine E. and Gertz, Jason, et el. (2013) Dynamic DNA methylation across diverse human cell lines and tissues; Genome Research; Vol. 23; No. 3; 555-567; PMCID PMC3589544; 10.1101/gr.147942.112
• Tetreault, Nicole A. and Hakeem, Atiya Y., et el. (2012) Microglia in the Cerebral Cortex in Autism; Journal of Autism and Developmental Disorders; Vol. 42; No. 12; 2569-2584; 10.1007/s10803-012-1513-0
• Raskatov, Jevgenij A. and Nickols, Nicholas G., et el. (2012) Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 40; 16041-16045; PMCID PMC3479560; 10.1073/pnas.1214267109
• Kuntz, Steven G. and Williams, Brian A., et el. (2012) Transcription factor redundancy and tissue-specific regulation: Evidence from functional and physical network connectivity; Genome Research; Vol. 22; No. 10; 1907-1919; PMCID PMC3460186; 10.1101/gr.133306.111
• Marinov, Georgi K. and Wold, Barbara, et el. (2012) An integrated encyclopedia of DNA elements in the human genome; Nature; Vol. 489; No. 7414; 57-74; PMCID PMC4243026; 10.1038/nature11247
• Djebali, Sarah and Mortazavi, Ali, et el. (2012) Landscape of transcription in human cells; Nature; Vol. 489; No. 7414; 101-108; PMCID PMC3684276; 10.1038/nature11233
• Park, Eddie and Williams, Brian, et el. (2012) RNA editing in the human ENCODE RNA-seq data; Genome Research; Vol. 22; No. 9; 1626-1633; PMCID PMC3431480; 10.1101/gr.134957.111
• Landt, Stephen G. and Marinov, Georgi K., et el. (2012) ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia; Genome Research; Vol. 22; No. 9; 1813-1831; PMCID PMC3431496; 10.1101/gr.136184.111
• Stamatoyannopoulos, John A. and Wold, Barbara J., et el. (2012) An encyclopedia of mouse DNA elements (Mouse ENCODE); Genome Biology; Vol. 13; No. 8; Art. No. 418; PMCID PMC3491367; 10.1186/gb-2012-13-8-418
• Chen, Yiwen and Negre, Nicolas, et el. (2012) Systematic evaluation of factors influencing ChIP-seq fidelity; Nature Methods; Vol. 9; No. 6; 609-614; PMCID PMC3477507; 10.1038/NMETH.1985
• Reddy, Timothy E. and Gertz, Jason, et el. (2012) Effects of sequence variation on differential allelic transcription factor occupancy and gene expression; Genome Research; Vol. 22; No. 5; 860-869; PMCID PMC3337432; 10.1101/gr.131201.111
• Zhang, Jingli A. and Mortazavi, Ali, et el. (2012) Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity; Cell; Vol. 149; No. 2; 467-482; PMCID PMC3336965; 10.1016/j.cell.2012.01.056
• Li, Guoliang and Fisher-Aylor, Katherine I., et el. (2012) Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation; Cell; Vol. 148; No. 1-2; 84-98; PMCID PMC3339270; 10.1016/j.cell.2011.12.014
• Tai, Phillip W. L. and Fisher-Aylor, Katherine I., et el. (2011) Differentiation and fiber type-specific activity of a muscle creatine kinase intronic enhancer; Skeletal Muscle; Vol. 1; Art. No. 25; PMCID PMC3157005; 10.1186/2044-5040-1-25
• Budd, Martin E. and Antoshechkin, Igor A., et el. (2011) Inviability of a DNA2 deletion mutant is due to the DNA damage checkpoint; Cell Cycle; Vol. 10; No. 10; 1690-1698; PMCID PMC3127164; 10.4161/cc.10.10.15643
• Wold, Barbara and Mortazavi, Ali, et el. (2011) A User's Guide to the Encyclopedia of DNA Elements (ENCODE); PLoS Biology; Vol. 9; No. 4; Art. No.e1001046; PMCID PMC3079585; 10.1371/journal.pbio.1001046
• Wold, Barbara and Mortazavi, Ali, et el. (2011) A User's Guide to the Encyclopedia of DNA Elements (ENCODE); PLoS Biology; Vol. 9; No. 4; Art. No. e1001046; PMCID PMC3079585; 10.1371/journal.pbio.1001046
• Ozdemir, Anil and Fisher-Aylor, Katherine I., et el. (2011) High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation; Genome Research; Vol. 21; No. 4; 566-577; PMCID PMC3065704; 10.1101/gr.104018.109
• Mortazavi, Ali and Schwarz, Erich M., et el. (2010) Scaffolding a Caenorhabditis nematode genome with RNA-seq; Genome Research; Vol. 20; No. 12; 1740-1747; PMCID PMC2990000; 10.1101/gr.111021.110
• Trapnell, Cole and Williams, Brian A., et el. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation; Nature Biotechnology; Vol. 28; No. 5; 511-515; PMCID PMC3146043; 10.1038/nbt.1621
• Pepke, Shirley and Wold, Barbara, et el. (2009) Computation for ChIP-seq and RNA-seq studies; Nature Methods; Vol. 6; No. 11s; S22-S32; PMCID PMC4121056; 10.1038/NMETH.1371
• Kuntz, Steven G. and Schwarz, Erich M., et el. (2008) Multigenome DNA sequence conservation identifies Hox cis-regulatory elements; Genome Research; Vol. 18; No. 12; 1955-1968; PMCID PMC2593573; 10.1101/gr.085472.108
• Berghella, Libera and De Angelis, Luciana, et el. (2008) A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle; Genes and Development; Vol. 22; No. 15; 2125-2138; PMCID PMC2492748; 10.1101/gad.468508
• Johnson, David S. and Mortazavi, Ali, et el. (2007) Genome-Wide Mapping of in Vivo Protein-DNA Interactions; Science; Vol. 316; No. 5830; 1497-1502; 10.1126/science.1141319
• Hart, Christopher E. and Mjolsness, Eric, et el. (2006) Connectivity in the yeast cell cycle transcription network : inferences from neural networks; PLoS Computational Biology; Vol. 2; No. 12; 1592-1607; PMCID PMC1761652; 10.1371/journal.pcbi.0020169
• Teal, Tracy K. and Lies, Douglas P., et el. (2006) Spatiometabolic Stratification of Shewanella oneidensis Biofilms; Applied and Environmental Microbiology; Vol. 72; No. 11; 7324-7330; PMCID PMC1636161; 10.1128/AEM.01163-06
• Williams, Brian A. and Gwirtz, Richele M., et el. (2006) Genomic DNA as a General Cohybridization Standard for Ratiometric Microarrays; ISBN 9780121828158; DNA Microarrays, Part A: Array Platforms and Wet-Bench Protocols; 237-279; 10.1016/s0076-6879(06)10012-9
• Liu, Jian and Williams, Brian A., et el. (2006) Enhanced Signals and Fast Nucleic Acid Hybridization By Microfluidic Chaotic Mixing; Angewandte Chemie International Edition; Vol. 45; No. 22; 3618-3623; 10.1002/anie.200503830
• Roden, Joseph C. and King, Brandon W., et el. (2006) Mining gene expression data by interpreting principal components; BMC Bioinformatics; Vol. 7; Art. No. 194; PMCID PMC1501050; 10.1186/1471-2105-7-194
• Hart, Christopher E. and Sharenbroich, Lucas, et el. (2005) A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data; Nucleic Acids Research; Vol. 33; No. 8; 2580-2594; PMCID PMC1092273; 10.1093/nar/gki536
• Li, Liang and Roden, Joe, et el. (2005) Reproducibility, Fidelity, and Discriminant Validity of mRNA Amplification for Microarray Analysis from Primary Hematopoietic Cells; Journal of Molecular Diagnostics; Vol. 7; No. 1; 48-56; PMCID PMC1867503; 10.1016/s1525-1578(10)60008-6
• Williams, Brian A. and Gwirtz, Richelle M., et el. (2004) Genomic DNA as a cohybridization standard for mammalian microarray measurements; Nucleic Acids Research; Vol. 32; No. 10; e81; PMCID PMC434457; 10.1093/nar/gnh078
• Graumann, Johannes and Dunipace, Leslie A., et el. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast; Molecular and Cellular Proteomics; Vol. 3; No. 3; 226-237; 10.1074/mcp.M300099-MCP200
• Thompson, H. Garrett R. and Harris, Joseph W., et el. (2003) p62 overexpression in breast tumors and regulation by prostate-derived Ets factor in breast cancer cells; Oncogene; Vol. 22; No. 15; 2322-2333; 10.1038/sj.onc.1206325
• Shapiro, Bruce E. and Levchenko, Andre, et el. (2003) Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations; Bioinformatics; Vol. 19; No. 5; 677-678; 10.1093/bioinformatics/btg042
• Brody, James P. and Williams, Brian A., et el. (2002) Significance and statistical errors in the analysis of DNA microarray data; Proceedings of the National Academy of Sciences of the United States of America; Vol. 99; No. 20; 12975-12978; PMCID PMC130571; 10.1073/pnas.162468199
• Thompson, H. Garrett R. and Harris, Joseph W., et el. (2002) Identification and Confirmation of a Module of Coexpressed Genes; Genome Research; Vol. 12; No. 10; 1517-1522; PMCID PMC187523; 10.1101/gr.418402
• Brown, C. Titus and Rust, Alistair G., et el. (2002) New Computational Approaches for Analysis of cis-Regulatory Networks; Developmental Biology; Vol. 246; No. 1; 86-102; 10.1006/dbio.2002.0619
• Roberts, Richard J. and Varmus, Harold E., et el. (2001) Information access - Building A "GenBank" of the Published Literature; Science; Vol. 291; No. 5512; 2318-2319; 10.1126/science.1060273
• Morrison, Sean J. and Csete, Marie, et el. (2000) Culture in Reduced Levels of Oxygen Promotes Clonogenic Sympathoadrenal Differentiation by Isolated Neural Crest Stem Cells; Journal of Neuroscience; Vol. 20; No. 19; 7370-7376; PMCID PMC6772795; 10.1523/JNEUROSCI.20-19-07370.2000
• Cornelison, D. D. W. and Olwin, Bradley B., et el. (2000) MyoD−/− Satellite Cells in Single-Fiber Culture Are Differentiation Defective and MRF4 Deficient; Developmental Biology; Vol. 224; No. 2; 122-137; 10.1006/dbio.2000.9682
• Mjolsness, Eric and Mann, Tobias, et el. (2000) From Coexpression to Coregulation: An Approach to Inferring Transcriptional Regulation among Gene Classes from Large-Scale Expression Data; ISBN 0-262-19450-3; Advances in Neural Information Processing Systems 12 (NIPS 1999); 928-934
• Zabludoff, Sonya D. and Csete, Marie, et el. (1998) p27^(Kip1) is expressed transiently in developing myotomes and enhances myogenesis; Cell Growth and Differentiation; Vol. 9; No. 1; 1-11
• Cornelison, D. D. W. and Wold, Barbara J. (1997) Single-Cell Analysis of Regulatory Gene Expression in Quiescent and Activated Mouse Skeletal Muscle Satellite Cells; Developmental Biology; Vol. 191; No. 2; 270-283; 10.1006/dbio.1997.8721
• Yoon, Jeong Kyo and Olson, Eric N., et el. (1997) Different MRF4 Knockout Alleles Differentially Disrupt Myf-5 Expression: cis-Regulatory Interactions at the MRF4/Myf-5 Locus; Developmental Biology; Vol. 188; No. 2; 349-362; 10.1006/dbio.1997.8670
• Zabludoff, S. D. and Wright, W. W., et el. (1996) BRCA1 mRNA is expressed highly during meiosis and spermiogenesis but not during mitosis of male germ cells; Oncogene; Vol. 13; No. 3; 649-53
• Olson, E. N. and Arnold, H.-H., et el. (1996) Know Your Neighbors: Three Phenotypes in Null Mutants of the Myogenic bHLH Gene MRF4; Cell; Vol. 85; No. 1; 1-4; 10.1016/s0092-8674(00)81073-9
• Patapoutian, Ardem and Wold, Barbara J., et el. (1995) Evidence for Developmentally Programmed Transdifferentiation in Mouse Esophageal Muscle; Science; Vol. 270; No. 5243; 1818-1821; 10.1126/science.270.5243.1818
• Jiang, Ping and Stone, Steven, et el. (1995) Comparative Analysis of Homo sapiens and Mus musculus Cyclin-Dependent Kinase (CDK) Inhibitor Genes P16 (MTSl) and PIS (MTS2); Journal of Molecular Evolution; Vol. 41; No. 6; 795-802; 10.1007/BF00173159
• Patapoutian, Ardem and Yoon, Jeong Kyo, et el. (1995) Disruption of the mouse MRF4 gene identifies multiple waves of myogenesis in the myotome; Development; Vol. 121; No. 10; 3347-3358
• Hacia, Joseph G. and Dervan, Peter B., et el. (1994) Inhibition of Klenow fragment DNA polymerase on double-helical templates by oligonucleotide-directed triple-helix formation; Biochemistry; Vol. 33; No. 20; 6192-6200; 10.1021/bi00186a019
• Hacia, Joseph G. and Wold, Barbara J., et el. (1994) Phosphorothioate oligonucleotide-directed triple helix formation; Biochemistry; Vol. 33; No. 18; 5367-5369; 10.1021/bi00184a002
• Tavtigian, Sean V. and Zabludoff, Sonya D., et el. (1994) Cloning of mid-G_1 serum response genes and identification of a subset regulated by conditional myc expression; Molecular Biology of the Cell; Vol. 5; No. 3; 375-388; PMCID PMC301044; 10.1091/mbc.5.3.375
• Garrity, Paul A. and Chen, Dan, et el. (1994) Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors; Molecular and Cellular Biology; Vol. 14; No. 3; 2159-2169; PMCID PMC358576; 10.1128/MCB.14.3.2159
• Bond, Vincent C. and Wold, Barbara (1993) Nucleolar localization of myc transcripts; Molecular and Cellular Biology; Vol. 13; No. 6; 3221-3230
• Patapoutian, Ardem and Miner, Jeffrey H., et el. (1993) Isolated sequences from the linked Myf-5 and MRF4 genes drive distinct patterns of muscle-specific expression in transgenic mice; Development; Vol. 118; No. 1; 61-69
• Miner, Jeffrey H. and Miller, Jeffrey B., et el. (1992) Skeletal muscle phenotypes initiated by ectopic MyoD in transgenic mouse heart; Development; Vol. 114; No. 4; 853-860
• Garrity, Paul A. and Wold, Barbara J. (1992) Effects of Different DNA Polymerases in Ligation-Mediated PCR: Enhanced Genomic Sequencing and In vivo Footprinting; Proceedings of the National Academy of Sciences of the United States of America; Vol. 89; No. 3; 1021-1025; PMCID PMC48377
• Maher, L. James, III and Dervan, Peter B., et el. (1992) Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system; Biochemistry; Vol. 31; No. 1; 70-81; 10.1021/bi00116a012
• Miner, Jeffrey H. and Wold, Barbara J. (1991) c-myc inhibition of MyoD and myogenin-initiated myogenic differentiation; Molecular and Cellular Biology; Vol. 11; No. 5; 2842-2851; PMCID PMC360069
• Mueller, Paul R. and Wold, Barbara (1991) Ligation‐Mediated PCR for Genomic Sequencing and Footprinting; Current Protocols in Molecular Biology; Vol. 14; No. 1; 15.5.1-15.5.16; 10.1002/j.1934-3647.1991.tb00217.x
• Garrity, Paul A. and Wold, Barbara J. (1990) Tissue-specific expression from a compound TATA-dependent and TATA-independent promoter; Molecular and Cellular Biology; Vol. 10; No. 11; 5646-5654; PMCID PMC361326
• Maher, L. James, III and Dervan, Peter B., et el. (1990) Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA; Biochemistry; Vol. 29; No. 37; 8820-8826; 10.1021/bi00489a045
• Miner, Jeffrey H. and Wold, Barbara J. (1990) Herculin, a Fourth Member of the MyoD Family of Myogenic Regulatory Genes; Proceedings of the National Academy of Sciences of the United States of America; Vol. 87; No. 3; 1089-1093; PMCID PMC53416; 10.1073/pnas.87.3.1089
• Mueller, Paul R. and Wold, Barbara (1989) In vivo Footprinting of a Muscle Specific Enhancer by Ligation Mediated PCR; Science; Vol. 246; No. 4931; 780-786; 10.1126/science.2814500
• Pfeiffer, Gerd P. and Steigerwald, Sabine D., et el. (1989) Genomic Sequencing and Methylation Analysis by Ligation Mediated PCR; Science; Vol. 246; No. 4931; 810-813; 10.1126/science.2814502
• Maher, Louis J., III and Wold, Barbara, et el. (1989) Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation; Science; Vol. 245; No. 4919; 725-730; 10.1126/science.2549631
• Johnson, Jane E. and Wold, Barbara J., et el. (1989) Muscle creatine kinase sequence elements regulating skeletal and cardiac muscle expression in transgenic mice; Molecular and Cellular Biology; Vol. 9; No. 8; 3393-3399; PMCID PMC362385
• Preugschat, Frank and Wold, Barbara J. (1988) Isolation and Characterization of a Xenopus laevis C Protein cDNA: Structure and Expression of a Heterogeneous Nuclear Ribonucleoprotein Core Protein; Proceedings of the National Academy of Sciences of the United States of America; Vol. 85; No. 24; 9669-9673; PMCID PMC282832; 10.1073/pnas.85.24.9669
• Ngai, John and Bond, V. Craig, et el. (1987) Expression of transfected vimentin genes in differentiating murine erythroleukemia cells reveals divergent cis-acting regulation of avian and mammalian vimentin sequences; Molecular and Cellular Biology; Vol. 7; No. 11; 3955-3970; PMCID PMC368064; 10.1128/MCB.7.11.3955
• Bond, V. Craig and Wold, Barbara (1987) Poly-L-ornithine-mediated transformation of mammalian cells; Molecular and Cellular Biology; Vol. 7; No. 6; 2286-2293
• Nakagawa, Terry Y. and Swanson, Maurice S., et el. (1986) Molecular Cloning of cDNA for the Nuclear Ribonucleoprotein Particle C Proteins: A Conserved Gene Family; Proceedings of the National Academy of Sciences of the United States of America; Vol. 83; No. 7; 2007-2011; PMCID PMC323219
• Kim, Stuart K. and Wold, Barbara J. (1985) Stable reduction of thymidine kinase activity in cells expressing high levels of anti-sense RNA; Cell; Vol. 42; No. 1; 129-138; 10.1016/S0092-8674(85)80108-2
• Moon, Randall T. and Ngai, John, et el. (1985) Tissue-specific Expression of Distinct Spectrin and Ankyrin Transcripts in Erythroid and Nonerythroid Cells; Journal of Cell Biology; Vol. 100; No. 1; 152-160; PMCID PMC2113487; 10.1083/jcb.100.1.152
• Wold, B. and Wigler, M., et el. (1979) Introduction and Expression of a Rabbit β-globin Gene in Mouse Fibroblasts; Proceedings of the National Academy of Sciences of the United States of America; Vol. 76; No. 11; 5684-5688
• Wold, Barbara J. and Klein, William H., et el. (1978) Sea urchin embryo mRNA sequences expressed in the nuclear RNA of adult tissues; Cell; Vol. 14; No. 4; 941-950; 10.1016/0092-8674(78)90348-3
• Hough-Evans, Barbara R. and Wold, Barbara J., et el. (1977) Appearance and persistence of maternal RNA sequences in sea urchin development; Developmental Biology; Vol. 60; No. 1; 258-277; 10.1016/0012-1606(77)90123-3
• Galau, Glenn A. and Klein, William H., et el. (1976) Structural Gene Sets Active in Embryos and Adult Tissues of the Sea Urchin; Cell; Vol. 7; No. 4; 487-505; 10.1016/0092-8674(76)90200-2